|
|
Homology
BLAST of mRNA_E_fasciculatus_S2_contig732.15510.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTS4_ECTSI) HSP 1 Score: 962 bits (2487), Expect = 0.000e+0 Identity = 524/603 (86.90%), Postives = 540/603 (89.55%), Query Frame = 1
Query: 676 MVSRPFRITAAKNLAHCESAGESAADKGPETSAFGADEYRHILLVGFEDICRLRHFLVVACESWAIRSGVETPAKELLSCAPVAAQRYLAGVLEVMTGPLRDQV-------DVQVELMEDLADEMILDAVVKEAFFSTGDIFFEISRRLGAAADTVAERSAVNTAAGGTAFRQDGFDGSTCSIGRDGRRAVVSDARLISATASVLDAAFFHSIQIPQRIHLVGRPKPMSLPAVAEDLVFVYCALCSRIVTPCEDGADSSDIDTGGRSSLKGFSPAGVERLAEGAMSPLDTLSTGVLDRVVRALNGISDVVSLFNIENEHLGIVRNLVGVGLGVKVRVGIQPAASDALAFLVRVNDRAVDLIEDLDRREQERRQLEAARLLALGPTTVSPTSEKNKGKKRSVFARLGSLSPRPRRSVTPPLSPPSPAVEPPAGLPPINDNSNVRINHLLEGSSRSANKTTARTGAPKQEKNGVDNTSGGL----VGLEGRRGGRNGGRSRPPISPTRCSESQDPSPRGFLSSAPVLLHSYVKLLNALVCGSYNLREAFFSSCEVDIRNIGREGGYLDVLSGLDGGAPRLVFRQTALFLHEIANLFYSFNAAVRK 2451
MVSRPFRITAAK LAHCESA SAADKGPETSA GADE+RHILLVGFEDICRLRHFLVVACESWAIR+GV T AKELLSCAPVAAQRYLAGVLEVMTGPLRDQV D QVELM+DLADEMILDAVVKEAFFSTGDIFFEISRRL AAA TVA SAVNTAAG AFR DGFDG RRAVVSDARLISATA+VLDAAFFHSIQIPQRI LVGRPKPMSLPAVAE LVFVYCALC RIVT CEDGAD+SDIDTGGR+ LKGFSPAGVERLAE AMSPLD LSTGVLDRVVRALNGISDVVSLFNIE+EHLGIVRNLVGVGLGVKVRVGIQPAASDALAF+VRVNDRAVDLIEDLDRREQERRQLE ARLLALGP +VSPTSEKNKGKKRSVFARLGSLSPRPRRSVTPPLSPPSPAVEPP GLPPINDNS+VR N++LEG S SA+KTTAR G PKQEK+ VDN SGGL VGLEGRRGG N S PP S T+C ESQ SPRGFLSSAPVLLHSY KLLNALVCGSYNLREAFFSSCEVDIRNIGREGGYLDVLS LDGGAPRLVFRQTALFLHEIANLFYSFN+AVRK
Sbjct: 1 MVSRPFRITAAKKLAHCESAVGSAADKGPETSASGADEHRHILLVGFEDICRLRHFLVVACESWAIRNGVGTRAKELLSCAPVAAQRYLAGVLEVMTGPLRDQVLQTEGTVDAQVELMQDLADEMILDAVVKEAFFSTGDIFFEISRRLEAAAATVAAGSAVNTAAGEIAFRHDGFDG---------RRAVVSDARLISATAAVLDAAFFHSIQIPQRIDLVGRPKPMSLPAVAEHLVFVYCALCRRIVTNCEDGADNSDIDTGGRNDLKGFSPAGVERLAEDAMSPLDALSTGVLDRVVRALNGISDVVSLFNIEHEHLGIVRNLVGVGLGVKVRVGIQPAASDALAFVVRVNDRAVDLIEDLDRREQERRQLEEARLLALGPVSVSPTSEKNKGKKRSVFARLGSLSPRPRRSVTPPLSPPSPAVEPPVGLPPINDNSDVRTNYILEGGSGSASKTTARAGVPKQEKSDVDNASGGLLGGLVGLEGRRGGGNSVGSPPPPSATQCFESQVSSPRGFLSSAPVLLHSYAKLLNALVCGSYNLREAFFSSCEVDIRNIGREGGYLDVLSRLDGGAPRLVFRQTALFLHEIANLFYSFNSAVRK 594
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Stop | 1 |
| Start | 1 |
| Model size | 2454 |
| Hectar predicted targeting category | mitochondrion |
| Exons | 5 |
| Cds size | 2454 |
Relationships
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1696842396.132813-CDS-E_fasciculatus_S2_contig732:9302..10178 | 1696842396.132813-CDS-E_fasciculatus_S2_contig732:9302..10178 | Ectocarpus fasciculatus EfasUO2 | CDS | E_fasciculatus_S2_contig732 9303..10178 - |
| 1696842396.143996-CDS-E_fasciculatus_S2_contig732:10363..10957 | 1696842396.143996-CDS-E_fasciculatus_S2_contig732:10363..10957 | Ectocarpus fasciculatus EfasUO2 | CDS | E_fasciculatus_S2_contig732 10364..10957 - |
| 1696842396.1589816-CDS-E_fasciculatus_S2_contig732:11382..11747 | 1696842396.1589816-CDS-E_fasciculatus_S2_contig732:11382..11747 | Ectocarpus fasciculatus EfasUO2 | CDS | E_fasciculatus_S2_contig732 11383..11747 - |
| 1696842396.1690369-CDS-E_fasciculatus_S2_contig732:11881..12034 | 1696842396.1690369-CDS-E_fasciculatus_S2_contig732:11881..12034 | Ectocarpus fasciculatus EfasUO2 | CDS | E_fasciculatus_S2_contig732 11882..12034 - |
| 1696842396.1804743-CDS-E_fasciculatus_S2_contig732:12641..13107 | 1696842396.1804743-CDS-E_fasciculatus_S2_contig732:12641..13107 | Ectocarpus fasciculatus EfasUO2 | CDS | E_fasciculatus_S2_contig732 12642..13107 - |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig732.15510.1 >prot_E_fasciculatus_S2_contig732.15510.1 ID=prot_E_fasciculatus_S2_contig732.15510.1|Name=mRNA_E_fasciculatus_S2_contig732.15510.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=818bp
MRQLSRLRTLSFPRQESAPPADATAGTSFTTAKPSGDASCNRDGETKFDP GPLKKEGSSMQRSLFLEHDEDNDEEDERGCMEAVSAFLAAVVHDANKQDS KRETPKGASPALLQTSKGAGTIECLDSARELLRFFGHSPLLHLEGVIWVK TSGERAHCLAALSNWSLFLVPLRDPSFIGGALHGFKKGKKHFSDRIVEVP LGSIVDVAPVGGREHLKTFRTVQANMVSRPFRITAAKNLAHCESAGESAA DKGPETSAFGADEYRHILLVGFEDICRLRHFLVVACESWAIRSGVETPAK ELLSCAPVAAQRYLAGVLEVMTGPLRDQVDVQVELMEDLADEMILDAVVK EAFFSTGDIFFEISRRLGAAADTVAERSAVNTAAGGTAFRQDGFDGSTCS IGRDGRRAVVSDARLISATASVLDAAFFHSIQIPQRIHLVGRPKPMSLPA VAEDLVFVYCALCSRIVTPCEDGADSSDIDTGGRSSLKGFSPAGVERLAE GAMSPLDTLSTGVLDRVVRALNGISDVVSLFNIENEHLGIVRNLVGVGLG VKVRVGIQPAASDALAFLVRVNDRAVDLIEDLDRREQERRQLEAARLLAL GPTTVSPTSEKNKGKKRSVFARLGSLSPRPRRSVTPPLSPPSPAVEPPAG LPPINDNSNVRINHLLEGSSRSANKTTARTGAPKQEKNGVDNTSGGLVGL EGRRGGRNGGRSRPPISPTRCSESQDPSPRGFLSSAPVLLHSYVKLLNAL VCGSYNLREAFFSSCEVDIRNIGREGGYLDVLSGLDGGAPRLVFRQTALF LHEIANLFYSFNAAVRK* back to topmRNA from alignment at E_fasciculatus_S2_contig732:9303..13107- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E_fasciculatus_S2_contig732.15510.1 ID=mRNA_E_fasciculatus_S2_contig732.15510.1|Name=mRNA_E_fasciculatus_S2_contig732.15510.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=3805bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig732:9303..13107- (Ectocarpus fasciculatus EfasUO2) ATGAGGCAGCTGTCGAGACTTCGAACCCTTTCCTTCCCAAGGCAAGAGAG
TGCTCCTCCTGCTGACGCAACGGCGGGAACAAGCTTCACCACGGCGAAGC
CGAGCGGAGATGCCAGTTGTAACCGTGATGGTGAGACCAAGTTTGACCCG
GGCCCGCTGAAAAAAGAGGGCTCTTCCATGCAACGTTCCCTTTTTCTTGA
ACATGATGAAGATAACGATGAGGAGGATGAACGTGGATGTATGGAAGCTG
TCTCGGCATTCCTCGCTGCAGTTGTCCACGACGCCAACAAACAGGACTCT
AAGCGAGAAACACCTAAAGGGGCCTCGCCGGCGCTGCTTCAGACGAGCAA
AGGGGCCGGAACGATCGAGTGCCTGGATTCTGCTCGTGAATTGCTGCGCT
TCTTCGGTCACTCGCCTCTGCTCCACCTGGAGGGGGTAATATGGGTCAAA
ACATCGGGGGAGCGAGGTAACAACGTACCGTAGGTATTACTAGACACCTT
TCCCGGACCGACTCTTAAAACCCAATTTGCTCTGCAGCATAGACAGTGAC
AGCGCCTCAAATGGTGGCGTGGGGACTGTCTTGTCGAGAGCATTTGTATC
ATTTGAGTTTAATCCTCTTCGTCGCGTCCGAAATCGAGCTTTGAAACTCG
GCCCAGGGGGTATGGGTATCTATGCGACTTACTGTACGCTATTTCCTACG
TATGCTACTGTTGAGTAATAAATGCCGGGGGGAGGGTTGTCGTGCTCTCA
CTTGCCTTCCATCTATCTGCATCCACACATCGTATTCGTGGGACAGCGCA
GCAAAAGGCGTAACCCTCTGCATAGCTAAACGAAGGACGATAGATGCTGT
AGCTCTCCTCCACTTTTGCCCATGCATCCCCCCGATGTTATGAACATATT
GTCAGCTGTAGATGGATGAAGTGCCCTACTCCACTCCAGTTTTCTGGGGC
GTGTAATTGTCTCCGCTTTGACCAGTGTTTCTCTGTCGGAAAATGACAAT
GCGAATTTCGTCTTCTCCCGCATGCAATACCTGTCACACGGTACACCCGT
AACGCCATTGAACACATGAACAGCCCATTGCCTCGCGGCGCTCTCCAACT
GGAGCCTTTTCCTCGTGCCCTTACGCGATCCTTCGTTCATCGGTGGAGCT
CTCCATGGTTTCAAGAAGGGGAAGAAACATTTCTCGGACCGAATAGTGGA
GGTTCCTCTCGGCTCGATCGTTGACGGTAAGGACTGACGTCTTTTCTCTT
GGCCAGCCTTTTTTAGCGCGCTGGATGCAAACTACAGTAAAATAATACAA
CCACACACACACACATGACCTTGGGAAGAATGTTTATAAATAATATTGCT
ATGCATACAGTTGCCCCTGTCGGCGGGCGGGAGCACCTCAAGACATTCCG
AACCGTTCAAGCCAATATGGTGTCCAGACCTTTCCGCATCACCGCCGCCA
AGAATCTTGCTCATTGCGAATCGGCGGGTGAATCTGCTGCTGACAAGGGG
CCCGAGACGAGTGCATTCGGAGCAGACGAATATCGTCACATCCTGCTCGT
AGGCTTCGAGGACATTTGTCGGCTGCGACATTTTTTGGTAGTCGCATGCG
AGAGCTGGGCTATCAGAAGCGGCGTTGAAACCCCTGCGAAGGAGCTACTG
TCGTGCGCCCCGGTGGCCGCGCAACGCTACCTTGCGGGTGTTCTGGAGGT
GATGACGGGACCTCTTCGTGACCAGGTGCTGCAAACCGAAGGGACCGTAA
ATGTGGCTGTGGTCCAGCCTGGGGTACTGGCCGGCCACGGCATTTGAGCT
AGATTGTTTAAAGCGTAGAATCGGACGCAACAGTATCATCAGACGGATTC
AAGTGCGCTGACCAAAGAGAAGCTCTGTAGATCTCATCGGGCGTGTGTTG
ACTCTCCCGAAAGCACTTTCGGGACGTGCGGTCCTGTGTGGTTTTTACCG
ACACGACCGTGAAAGAGCTGCCTCGGCAGCAATGCCACCTCGCTTGGGTG
TTTTCCCCACAACGATACGCCGTCAACACCCTTGAAGGAGGTGAAAATGG
TGTTCCTGGTAGACCTACCTACTTTCAATGATGCTGAAGACCAATCAACG
GGGGTTTTATCTTACTTTGGAAATCCTGATGTCCGCACAATGACACGCAG
GTCGACGTCCAGGTAGAACTCATGGAAGACCTCGCCGACGAGATGATACT
GGATGCTGTGGTGAAGGAGGCGTTTTTTTCCACGGGTGACATCTTCTTCG
AAATTTCTAGAAGACTAGGGGCCGCAGCAGACACCGTTGCCGAACGCTCG
GCGGTCAATACCGCAGCAGGGGGAACTGCGTTCCGTCAAGATGGCTTTGA
TGGAAGCACTTGCAGCATTGGACGGGATGGCAGGCGAGCGGTGGTTTCGG
ACGCTCGCTTGATCTCCGCCACCGCCTCCGTCCTTGACGCAGCATTCTTT
CACAGCATTCAGATTCCACAAAGGATCCATCTCGTCGGACGGCCGAAGCC
GATGTCTCTCCCAGCTGTAGCCGAAGACCTCGTCTTCGTCTACTGTGCCC
TGTGCAGTCGAATAGTGACGCCTTGCGAGGATGGGGCCGACAGCAGTGAC
ATCGACACCGGAGGCAGAAGCAGCCTCAAAGGTTTCTCACCGGCAGGGGT
TGAGCGCTTGGCTGAAGGCGCGATGTCACCGTTGGACACCTTGTCCACGG
GCGTCCTGGACCGTGTTGTCCGGGCACTCAACGGGATAAGCGACGTGAGT
ATTCTAAACCTCTCTTGTCTCCCTCCGCTCACTCATGTATGTGCCTATAT
TGAGAGCGAGCCATGACTTCCCAACGGCGACAGCCTTGCTCGAACCGGTC
AACTGATCCGCTGTCTCAACTCCTGCACTCCGAAATCACGGATCCCACAT
CCTCCTTCGACGCGTCCCTCACGTCCCAGGTTGTCAGCCTGTTCAACATC
GAGAACGAACACCTGGGTATTGTTCGGAACCTCGTAGGCGTTGGGCTCGG
CGTCAAGGTGCGCGTGGGAATCCAACCCGCCGCCTCGGATGCGCTAGCCT
TCCTCGTCAGGGTCAACGATCGAGCCGTCGATCTTATCGAGGACCTCGAT
AGACGGGAGCAAGAGCGGCGACAGCTGGAGGCTGCAAGGTTGCTAGCACT
CGGACCCACTACCGTCTCGCCCACTTCCGAGAAGAACAAGGGCAAGAAGA
GGAGCGTTTTCGCTAGGCTTGGTTCTCTCTCCCCACGCCCGCGTAGGTCG
GTAACCCCGCCCTTGTCTCCGCCATCACCAGCCGTCGAGCCACCAGCAGG
GCTTCCACCGATCAACGATAACAGCAACGTTAGGATAAACCATCTTTTGG
AAGGCAGCAGCAGGAGTGCCAACAAGACCACAGCTCGAACGGGCGCACCC
AAACAAGAGAAGAATGGTGTGGACAACACCAGCGGCGGCTTAGTAGGTTT
GGAAGGACGGCGGGGAGGTAGAAATGGCGGTAGGTCGCGTCCACCAATCT
CGCCGACCCGGTGTTCTGAGTCTCAAGATCCTTCGCCTCGAGGATTTCTG
TCGAGTGCCCCGGTGCTTTTACACTCGTACGTGAAGTTGTTGAACGCGCT
GGTGTGTGGGAGTTACAACTTGAGGGAGGCCTTCTTCTCTTCCTGCGAAG
TGGATATCCGCAACATTGGACGAGAGGGCGGATACCTCGACGTTTTATCA
GGGCTGGACGGAGGGGCGCCGCGATTGGTGTTCAGGCAAACCGCCCTGTT
CTTGCACGAGATAGCCAACTTGTTTTATTCTTTCAATGCGGCCGTAAGAA
AATGA back to topCoding sequence (CDS) from alignment at E_fasciculatus_S2_contig732:9303..13107- >mRNA_E_fasciculatus_S2_contig732.15510.1 ID=mRNA_E_fasciculatus_S2_contig732.15510.1|Name=mRNA_E_fasciculatus_S2_contig732.15510.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=2454bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig732:9303..13107- (Ectocarpus fasciculatus EfasUO2) ATGAGGCAGCTGTCGAGACTTCGAACCCTTTCCTTCCCAAGGCAAGAGAG TGCTCCTCCTGCTGACGCAACGGCGGGAACAAGCTTCACCACGGCGAAGC CGAGCGGAGATGCCAGTTGTAACCGTGATGGTGAGACCAAGTTTGACCCG GGCCCGCTGAAAAAAGAGGGCTCTTCCATGCAACGTTCCCTTTTTCTTGA ACATGATGAAGATAACGATGAGGAGGATGAACGTGGATGTATGGAAGCTG TCTCGGCATTCCTCGCTGCAGTTGTCCACGACGCCAACAAACAGGACTCT AAGCGAGAAACACCTAAAGGGGCCTCGCCGGCGCTGCTTCAGACGAGCAA AGGGGCCGGAACGATCGAGTGCCTGGATTCTGCTCGTGAATTGCTGCGCT TCTTCGGTCACTCGCCTCTGCTCCACCTGGAGGGGGTAATATGGGTCAAA ACATCGGGGGAGCGAGCCCATTGCCTCGCGGCGCTCTCCAACTGGAGCCT TTTCCTCGTGCCCTTACGCGATCCTTCGTTCATCGGTGGAGCTCTCCATG GTTTCAAGAAGGGGAAGAAACATTTCTCGGACCGAATAGTGGAGGTTCCT CTCGGCTCGATCGTTGACGTTGCCCCTGTCGGCGGGCGGGAGCACCTCAA GACATTCCGAACCGTTCAAGCCAATATGGTGTCCAGACCTTTCCGCATCA CCGCCGCCAAGAATCTTGCTCATTGCGAATCGGCGGGTGAATCTGCTGCT GACAAGGGGCCCGAGACGAGTGCATTCGGAGCAGACGAATATCGTCACAT CCTGCTCGTAGGCTTCGAGGACATTTGTCGGCTGCGACATTTTTTGGTAG TCGCATGCGAGAGCTGGGCTATCAGAAGCGGCGTTGAAACCCCTGCGAAG GAGCTACTGTCGTGCGCCCCGGTGGCCGCGCAACGCTACCTTGCGGGTGT TCTGGAGGTGATGACGGGACCTCTTCGTGACCAGGTCGACGTCCAGGTAG AACTCATGGAAGACCTCGCCGACGAGATGATACTGGATGCTGTGGTGAAG GAGGCGTTTTTTTCCACGGGTGACATCTTCTTCGAAATTTCTAGAAGACT AGGGGCCGCAGCAGACACCGTTGCCGAACGCTCGGCGGTCAATACCGCAG CAGGGGGAACTGCGTTCCGTCAAGATGGCTTTGATGGAAGCACTTGCAGC ATTGGACGGGATGGCAGGCGAGCGGTGGTTTCGGACGCTCGCTTGATCTC CGCCACCGCCTCCGTCCTTGACGCAGCATTCTTTCACAGCATTCAGATTC CACAAAGGATCCATCTCGTCGGACGGCCGAAGCCGATGTCTCTCCCAGCT GTAGCCGAAGACCTCGTCTTCGTCTACTGTGCCCTGTGCAGTCGAATAGT GACGCCTTGCGAGGATGGGGCCGACAGCAGTGACATCGACACCGGAGGCA GAAGCAGCCTCAAAGGTTTCTCACCGGCAGGGGTTGAGCGCTTGGCTGAA GGCGCGATGTCACCGTTGGACACCTTGTCCACGGGCGTCCTGGACCGTGT TGTCCGGGCACTCAACGGGATAAGCGACGTTGTCAGCCTGTTCAACATCG AGAACGAACACCTGGGTATTGTTCGGAACCTCGTAGGCGTTGGGCTCGGC GTCAAGGTGCGCGTGGGAATCCAACCCGCCGCCTCGGATGCGCTAGCCTT CCTCGTCAGGGTCAACGATCGAGCCGTCGATCTTATCGAGGACCTCGATA GACGGGAGCAAGAGCGGCGACAGCTGGAGGCTGCAAGGTTGCTAGCACTC GGACCCACTACCGTCTCGCCCACTTCCGAGAAGAACAAGGGCAAGAAGAG GAGCGTTTTCGCTAGGCTTGGTTCTCTCTCCCCACGCCCGCGTAGGTCGG TAACCCCGCCCTTGTCTCCGCCATCACCAGCCGTCGAGCCACCAGCAGGG CTTCCACCGATCAACGATAACAGCAACGTTAGGATAAACCATCTTTTGGA AGGCAGCAGCAGGAGTGCCAACAAGACCACAGCTCGAACGGGCGCACCCA AACAAGAGAAGAATGGTGTGGACAACACCAGCGGCGGCTTAGTAGGTTTG GAAGGACGGCGGGGAGGTAGAAATGGCGGTAGGTCGCGTCCACCAATCTC GCCGACCCGGTGTTCTGAGTCTCAAGATCCTTCGCCTCGAGGATTTCTGT CGAGTGCCCCGGTGCTTTTACACTCGTACGTGAAGTTGTTGAACGCGCTG GTGTGTGGGAGTTACAACTTGAGGGAGGCCTTCTTCTCTTCCTGCGAAGT GGATATCCGCAACATTGGACGAGAGGGCGGATACCTCGACGTTTTATCAG GGCTGGACGGAGGGGCGCCGCGATTGGTGTTCAGGCAAACCGCCCTGTTC TTGCACGAGATAGCCAACTTGTTTTATTCTTTCAATGCGGCCGTAAGAAA ATGA back to top
|