mRNA_E_fasciculatus_S2_contig7310.15504.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7310.15504.1
Unique NamemRNA_E_fasciculatus_S2_contig7310.15504.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig7310.15504.1 vs.
Match: Putative (Leucine Rich Repeat Protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUA1_ECTSI)

HSP 1 Score: 166 bits (421), Expect = 2.500e-45
Identity = 96/125 (76.80%), Postives = 104/125 (83.20%), Query Frame = 1 
Query:    1 GGPAVGESLNSWRARLRKQEQAAVREDPKAEKPAARSNSSTQDDKPGKLDGATTEPISGSSQAADRDHTTQAQISSFSALXXXXXXXQTSLEQVRQLVEALGANRSSPGTGLSETGTLGELDRLV 375
            GGPA  ESL+SWRARLR+QEQAAVRED KAE PA R++SSTQ DKPGK DGATTEPISGSS+ AD DH TQAQISSFS+L       Q SLEQV QLVEALG NRSSPGTGL+ TGTLGEL+RLV
Sbjct:  368 GGPAKDESLDSWRARLRQQEQAAVREDTKAENPAVRTSSSTQGDKPGKPDGATTEPISGSSREADMDHITQAQISSFSSLSTLCGGSQASLEQVGQLVEALGINRSSPGTGLNGTGTLGELNRLV 492
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BLAST of mRNA_E_fasciculatus_S2_contig7310.15504.1 vs.
Match: Leucine (rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUA2_ECTSI)

HSP 1 Score: 165 bits (417), Expect = 8.530e-45
Identity = 96/125 (76.80%), Postives = 102/125 (81.60%), Query Frame = 1 
Query:    1 GGPAVGESLNSWRARLRKQEQAAVREDPKAEKPAARSNSSTQDDKPGKLDGATTEPISGSSQAADRDHTTQAQISSFSALXXXXXXXQTSLEQVRQLVEALGANRSSPGTGLSETGTLGELDRLV 375
            GGP  GESL+SWRARLR+QEQAAVRED KAE PAAR++SSTQ DKPGK D ATTEPISGSS+ AD DH TQAQISSFSAL          LEQVRQLVEAL  NR SPGTGLSETGTLGEL+RLV
Sbjct:  341 GGPTRGESLDSWRARLRQQEQAAVREDTKAENPAARTSSSTQGDKPGKTDRATTEPISGSSREADMDHMTQAQISSFSALSTLCGGSHKRLEQVRQLVEALDINRFSPGTGLSETGTLGELNRLV 465
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BLAST of mRNA_E_fasciculatus_S2_contig7310.15504.1 vs.
Match: Leucine (Rich Repeat Protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUA0_ECTSI)

HSP 1 Score: 159 bits (401), Expect = 1.300e-42
Identity = 94/124 (75.81%), Postives = 101/124 (81.45%), Query Frame = 1 
Query:    4 GPAVGESLNSWRARLRKQEQAAVREDPKAEKPAARSNSSTQDDKPGKLDGATTEPISGSSQAADRDHTTQAQISSFSALXXXXXXXQTSLEQVRQLVEALGANRSSPGTGLSETGTLGELDRLV 375
            GPA  ESL+SWRARLR+QEQAA RED KAE PAAR++SSTQ DKPGK D ATT PISGSS+ AD D  TQAQISSFSAL         SLEQVRQLVEALG NRSSPGTGLSETGTLGE++RLV
Sbjct:  554 GPAKDESLDSWRARLRQQEQAAEREDTKAENPAARTSSSTQGDKPGKPDRATTGPISGSSREADMDDMTQAQISSFSALSTLCGGRHKSLEQVRQLVEALGINRSSPGTGLSETGTLGEVNRLV 677
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BLAST of mRNA_E_fasciculatus_S2_contig7310.15504.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUA5_ECTSI)

HSP 1 Score: 94.4 bits (233), Expect = 1.110e-20
Identity = 53/73 (72.60%), Postives = 58/73 (79.45%), Query Frame = 1 
Query:    4 GPAVGESLNSWRARLRKQEQAAVREDPKAEKPAARSNSSTQDDKPGKLDGATTEPISGSSQAADRDHTTQAQI 222
            GP  GESL+SWRARLR+QEQA  RE P AE PA R++SSTQ DKPG  DGATTEPISGSS+ AD DH TQ QI
Sbjct:  244 GPTRGESLDSWRARLRQQEQATEREHPTAENPAVRTSSSTQGDKPGNPDGATTEPISGSSREADMDHMTQVQI 316
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BLAST of mRNA_E_fasciculatus_S2_contig7310.15504.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9X6_9PHAE)

HSP 1 Score: 77.0 bits (188), Expect = 4.130e-16
Identity = 42/56 (75.00%), Postives = 46/56 (82.14%), Query Frame = 1 
Query:  208 TQAQISSFSALXXXXXXXQTSLEQVRQLVEALGANRSSPGTGLSETGTLGELDRLV 375
            TQAQ+SSFSAL       ++SLEQVRQLVEALG NRSSPGTGL ET TLGEL+RLV
Sbjct:    2 TQAQVSSFSALSTLCGGSRSSLEQVRQLVEALGINRSSPGTGLGETATLGELNRLV 57
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7310.15504.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9E9_9PHAE)

HSP 1 Score: 70.1 bits (170), Expect = 1.240e-12
Identity = 40/54 (74.07%), Postives = 45/54 (83.33%), Query Frame = 1 
Query:   67 AVREDPKAEKPAARSNSSTQDDKPGKLDGATTEPISGSSQAADRDHTTQAQISS 228
            A REDP AE PAAR++S TQ DKPGK DGATTEP+SGSS+ AD DH TQAQ+SS
Sbjct:   13 AEREDPTAENPAARTSSWTQGDKPGKPDGATTEPVSGSSREADMDHMTQAQMSS 66
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7310.15504.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
Putative2.500e-4576.80Leucine Rich Repeat Protein n=1 Tax=Ectocarpus sil... [more]
Leucine8.530e-4576.80rich repeat protein n=1 Tax=Ectocarpus siliculosus... [more]
Leucine1.300e-4275.81Rich Repeat Protein n=1 Tax=Ectocarpus siliculosus... [more]
Uncharacterized1.110e-2072.60protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized4.130e-1675.00protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized1.240e-1274.07protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7310contigE_fasciculatus_S2_contig7310:7268..7646 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score174.5
Seed ortholog evalue3.2e-41
Seed eggNOG ortholog2880.D7FUA1
Model size379
KEGG koko:K04730,ko:K04733
KEGG Pathwayko04010,ko04064,ko04620,ko04621,ko04624,ko04722,ko05133,ko05140,ko05142,ko05145,ko05152,ko05162,ko05164,ko05169,map04010,map04064,map04620,map04621,map04624,map04722,map05133,map05140,map05142,map05145,map05152,map05162,map05164,map05169
KEGG ModuleM00686
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005623,GO:0005886,GO:0005911,GO:0009506,GO:0016020,GO:0030054,GO:0042995,GO:0044464,GO:0055044,GO:0071944,GO:0090406,GO:0120025
Exons1
EggNOG free text desc.protein serine/threonine kinase activity
EggNOG OGs2QQYD@2759,COG4886@1
EC2.7.11.1
Cds size378
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01001
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842395.673116-CDS-E_fasciculatus_S2_contig7310:7267..76451696842395.673116-CDS-E_fasciculatus_S2_contig7310:7267..7645Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7310 7268..7645 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7310.15504.1prot_E_fasciculatus_S2_contig7310.15504.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7310 7268..7645 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7310.15504.1

>prot_E_fasciculatus_S2_contig7310.15504.1 ID=prot_E_fasciculatus_S2_contig7310.15504.1|Name=mRNA_E_fasciculatus_S2_contig7310.15504.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=126bp
GGPAVGESLNSWRARLRKQEQAAVREDPKAEKPAARSNSSTQDDKPGKLD
GATTEPISGSSQAADRDHTTQAQISSFSALSALSGVSQTSLEQVRQLVEA
LGANRSSPGTGLSETGTLGELDRLVG
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mRNA from alignment at E_fasciculatus_S2_contig7310:7268..7646+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7310.15504.1 ID=mRNA_E_fasciculatus_S2_contig7310.15504.1|Name=mRNA_E_fasciculatus_S2_contig7310.15504.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=379bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7310:7268..7646+ (Ectocarpus fasciculatus EfasUO2)
GGAGGGCCGGCGGTGGGCGAGAGTCTTAATTCGTGGAGGGCAAGACTGCG
GAAGCAGGAGCAGGCAGCTGTACGCGAAGACCCAAAAGCGGAAAAACCCG
CCGCACGAAGCAATTCCTCGACACAAGACGACAAGCCTGGGAAGCTAGAC
GGCGCTACCACGGAACCGATTTCTGGTTCGTCACAGGCGGCAGATAGGGA
CCACACGACTCAGGCTCAGATTTCTTCCTTTTCGGCGTTGAGCGCGCTAT
CTGGAGTGAGTCAAACAAGCTTGGAGCAGGTTAGACAGCTGGTTGAAGCA
CTGGGCGCCAATCGGTCTTCTCCCGGCACGGGACTTAGCGAGACGGGCAC
GCTCGGGGAGCTGGACAGGCTGGTGGGAA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7310:7268..7646+

>mRNA_E_fasciculatus_S2_contig7310.15504.1 ID=mRNA_E_fasciculatus_S2_contig7310.15504.1|Name=mRNA_E_fasciculatus_S2_contig7310.15504.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=378bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7310:7268..7646+ (Ectocarpus fasciculatus EfasUO2)
GGAGGGCCGGCGGTGGGCGAGAGTCTTAATTCGTGGAGGGCAAGACTGCG
GAAGCAGGAGCAGGCAGCTGTACGCGAAGACCCAAAAGCGGAAAAACCCG
CCGCACGAAGCAATTCCTCGACACAAGACGACAAGCCTGGGAAGCTAGAC
GGCGCTACCACGGAACCGATTTCTGGTTCGTCACAGGCGGCAGATAGGGA
CCACACGACTCAGGCTCAGATTTCTTCCTTTTCGGCGTTGAGCGCGCTAT
CTGGAGTGAGTCAAACAAGCTTGGAGCAGGTTAGACAGCTGGTTGAAGCA
CTGGGCGCCAATCGGTCTTCTCCCGGCACGGGACTTAGCGAGACGGGCAC
GCTCGGGGAGCTGGACAGGCTGGTGGGA
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