mRNA_E_fasciculatus_S2_contig7304.15496.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7304.15496.1
Unique NamemRNA_E_fasciculatus_S2_contig7304.15496.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig7304.15496.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMW0_ECTSI)

HSP 1 Score: 200 bits (509), Expect = 9.710e-59
Identity = 161/347 (46.40%), Postives = 175/347 (50.43%), Query Frame = 1 
Query:    1 MSNGDTVRISQGICAMGEETGHQSPFRCAEDSTLALQPPKHGMPQKKANKNKRKRQQRDVQPAPRKSARLIAKAEAAALAISPVNIVAISSIPKKKIKDQSNPDHAVSTIGTPRSSTHAIGKQEEPSVSCFDKEEGLTPTELMEAFGCTDYSKPDQVASAIGRPPSSMHATGKQEEPSDRCFDEERALMPTEPTEMSRCIDDDSKPDQAASTIGRPPAPMHEPSVNCFGEETPTEMLDVSRCTIYGXXXXXXXXXXXXXXXXXXEPNDSCFDETKALTSMDLMEASRCTDDEGEISTTTQPELLPVFLLAFLHEDQILDGDGEKGWVMDAKEGKVMDAVKAIQDAAP 1041
            MSNG+TVRIS GICAMGEETGHQ   R  E S  + QP +  M        KRK + RD QP PR+S R+  K  AAA AIS  + V I+     K  DQSNPD   + IGTP S  H IGKQEEPS   FD+E  LT TELME + CTD SKP QVASAIGRPPS MH                                                                             XXXXXXXXXXXXXXXXXX                           EG ISTTTQP+LLP FLLAFL +D ILD DGE+GWVMDAKEGKVMDAVKAIQD  P
Sbjct:    1 MSNGETVRISHGICAMGEETGHQYSLRWDESSLPSPQPTERDM-----QTQKRKHRPRDAQPIPRRSKRIRNKIAAAAAAISAPDAVVIND--NAKDNDQSNPDQVAAAIGTPWSPMHGIGKQEEPSDRFFDEENALTRTELMEVYRCTDDSKPYQVASAIGRPPSRMHXXXXX--------------------------------------------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGNISTTTQPDLLPAFLLAFLKDDLILDADGEEGWVMDAKEGKVMDAVKAIQDTVP 290
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7304.15496.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized9.710e-5946.40protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7304contigE_fasciculatus_S2_contig7304:276..3063 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start1
Model size1044
Hectar predicted targeting categoryother localisation
Exons6
Cds size1044
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7304.15496.1prot_E_fasciculatus_S2_contig7304.15496.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7304 276..3063 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842394.8108904-CDS-E_fasciculatus_S2_contig7304:275..5331696842394.8108904-CDS-E_fasciculatus_S2_contig7304:275..533Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7304 276..533 -
1696842394.831161-CDS-E_fasciculatus_S2_contig7304:794..9201696842394.831161-CDS-E_fasciculatus_S2_contig7304:794..920Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7304 795..920 -
1696842394.844459-CDS-E_fasciculatus_S2_contig7304:1170..13261696842394.844459-CDS-E_fasciculatus_S2_contig7304:1170..1326Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7304 1171..1326 -
1696842394.863172-CDS-E_fasciculatus_S2_contig7304:1543..16961696842394.863172-CDS-E_fasciculatus_S2_contig7304:1543..1696Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7304 1544..1696 -
1696842394.8909364-CDS-E_fasciculatus_S2_contig7304:1930..21701696842394.8909364-CDS-E_fasciculatus_S2_contig7304:1930..2170Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7304 1931..2170 -
1696842394.9063382-CDS-E_fasciculatus_S2_contig7304:2952..30631696842394.9063382-CDS-E_fasciculatus_S2_contig7304:2952..3063Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7304 2953..3063 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7304.15496.1

>prot_E_fasciculatus_S2_contig7304.15496.1 ID=prot_E_fasciculatus_S2_contig7304.15496.1|Name=mRNA_E_fasciculatus_S2_contig7304.15496.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=348bp
MSNGDTVRISQGICAMGEETGHQSPFRCAEDSTLALQPPKHGMPQKKANK
NKRKRQQRDVQPAPRKSARLIAKAEAAALAISPVNIVAISSIPKKKIKDQ
SNPDHAVSTIGTPRSSTHAIGKQEEPSVSCFDKEEGLTPTELMEAFGCTD
YSKPDQVASAIGRPPSSMHATGKQEEPSDRCFDEERALMPTEPTEMSRCI
DDDSKPDQAASTIGRPPAPMHEPSVNCFGEETPTEMLDVSRCTIYGKPDQ
ATSAIGRPASPMQEEPNDSCFDETKALTSMDLMEASRCTDDEGEISTTTQ
PELLPVFLLAFLHEDQILDGDGEKGWVMDAKEGKVMDAVKAIQDAAP*
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mRNA from alignment at E_fasciculatus_S2_contig7304:276..3063-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7304.15496.1 ID=mRNA_E_fasciculatus_S2_contig7304.15496.1|Name=mRNA_E_fasciculatus_S2_contig7304.15496.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=2788bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7304:276..3063- (Ectocarpus fasciculatus EfasUO2)
ATGAGCAACGGAGACACTGTTCGAATCAGCCAAGGCATCTGCGCGATGGG
CGAGGAAACCGGCCATCAGTCGCCATTCCGCTGCGCTGAGGATTCGACGC
TTGCGCTACAGGTAAAACCCGTTGTTGTTGGGCGTGTCGGGGACGGGGCT
GTTGTCCAGGTTGGACACTCACTTTCCCCGTACCACTTGGTTAGGCCAGA
TTACGGACACTGCCGCGACGTTGCAGGTGCAAAGTCTGAATGGCCTCGGC
TTGGAAGCGATGCGATGAAACCTGGGGACCGCATGAACAACAGACCTAGA
CTTCGTAGCCACAGAGGGCGAGGGCTCATTCTCGGCGCCCGAACCAATTC
TCATGGTCGCTCGCTGTCGGTGCCGGGTTCCACTCGTTTAGTTTCTCCTC
TCTGGGATCTATGTCGATGGTGGAAAATGTGTTCGGTACATGGGACAAGA
CTACTAGACTATTGGTTTTGGTTTTCGGAGGCATCTTCTGGGATGACCAG
ATTTCCCTTGAGCACACACGCTCCTTCTCCTTTCGTGGCCCCCCACTACG
TGCATCCCTTGAGCACACACGCTCCTTCTCCTTTCGTGGCCCCCCACTAC
GTGCATCATAGACACGCCAGACACGTTGGCGTGTTTCCCATATAATCATG
AGGCGAGAGTGTCTCATGGCGATTTCCTTGTCTCAGTTGAAGAAAACGCA
TGTAAGGCAAGCGTACACGGTCCGGAGCCCAATTCCAATATTGTTCTGCA
AGTGGTTGTGAGAGACTAAAGCTTGTGCGTGTTTGCGAGCCATACACACA
CGAACGGGTAAATGTAGGTACCTCCTCGTCCACCCACCGAAATATTTCCT
CTCCTCCTGTCGTGTGCGTCGTTCTCTGCAATCCTCCCTCCAGCCACCTA
AACATGGCATGCCACAAAAAAAGGCGAACAAAAACAAGCGGAAACGCCAA
CAACGTGACGTCCAGCCCGCACCGCGGAAAAGCGCACGCCTCATCGCCAA
AGCCGAGGCCGCAGCCTTGGCAATTTCTCCCGTCAACATCGTGGCCATCA
GCAGTATCCCCAAAAAGAAAATCAAAGACCAGAGCAACCCCGACCACGCG
GTATCAACGATTGGGACGCCTCGGTCATCCACGGTAAGGCAAACGACGAT
ATATTGTATGGACCGAAAGCAGGGAAAACGGGAAGAACAGAAGACGAAAG
GCGTCGCGGTTCTTTACTGGCGTCGACCGTGCTAGCCGGTGGAGCAATCA
GAATGTGTTTGTATGTTATTTGAAATGGGTACCAGATAATGGATCAAACT
CGTCGGATGTTGGACTGAATCATGTTTCTCTCTGTCTCTCTGCCTTTCCC
TCCCTCTTCTTGATCAGCATGCCATTGGAAAGCAAGAAGAGCCAAGTGTC
AGTTGCTTCGACAAAGAAGAGGGGCTCACGCCAACGGAACTGATGGAAGC
TTTCGGTTGTACTGACTATAGCAAACCGGACCAAGTGGCATCAGCGATTG
GGAGGCCTCCGTCATCGATGGTAAGGGGCCCAGCGACACAGGCTATTGTT
GTCCTCACTACGGTACGAAGGCGGGCACTTGAAAGCGTCGTTATTGCTAG
GTTGGCATCGACCGCTCTACAGTCGGCAGAATCGTAAATAATTCGTATTG
TATAGATAGAGGATCAGGCTTATCGGAGGTTGGACTGAACCAAGGTTATC
TCGTTTCTCTCTGTGTCTCACCCCTCTCCTTGAACAGCATGCTACTGGAA
AGCAAGAAGAGCCGAGTGACCGTTGCTTCGACGAGGAAAGAGCGCTCATG
CCGACCGAACCCACGGAAATGTCCCGTTGTATCGATGATGATAGCAAACC
GGACCAAGCGGCGTCAACGATTGGGAGGCCTCCGGCACCGATGGTAAGGA
ACACAACTTCACACACTATTGCTGTTTGTTCCCACTACTGTACGAAGGCG
GGCACTAACAACAGACAGACAACGAGGCGTCGTGATTGGTGAGTTGACAT
TGACCGCTCTACGGTCGGCAGAATAATGAAGAAAATGTACACATAGATCG
AGCATCAGGCTTACTGCACTAAATCATACCTGCGTCTCTCTGCCTCTCCG
TCCCTCTACCCCTCTCGTTGAACGGCATGCTATTGGAAAGCAGCATGAGC
CGAGTGTCAATTGCTTCGGCGAGGAAACGCCAACGGAAATGCTGGACGTT
TCCCGTTGTACCATTTATGGCAAACCGGACCAAGCAACATCAGCGATTGG
GAGGCCTGCGTCACCGATGGTAAGGAACACCACTTCAAAAAAAAGTGTTG
TTTGTCCCCACTACAGCACAAAGGCGGGCACTACAAACGGAAAGTAGGCG
ACAATACAACGTAGTGATTGATGAGTTGACATCGACCACGTTACAATCTG
CAACACACCGACGAAAACGTACACATTGATCGGGAACCCGGCTTATCCGG
AGGTTAGACTGAATCATCTCTCTGTCTCTCTGCCTCTCCGTCCCTCTACC
CCTCTCGCTGAACGGCGTGCTATTGGAAAGCAGGAAGAGCCCAACGATAG
TTGCTTCGACGAGACAAAGGCGCTCACTTCAATGGACCTGATGGAAGCTT
CCCGTTGTACCGACGATGAGGGGGAAATTTCCACGACCACACAACCGGAA
CTGCTTCCGGTCTTCCTCTTGGCCTTCCTACACGAAGACCAAATACTCGA
TGGCGACGGGGAGAAGGGCTGGGTGATGGACGCGAAGGAGGGCAAAGTGA
TGGACGCAGTAAAGGCCATCCAAGACGCGGCGCCCTGA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7304:276..3063-

>mRNA_E_fasciculatus_S2_contig7304.15496.1 ID=mRNA_E_fasciculatus_S2_contig7304.15496.1|Name=mRNA_E_fasciculatus_S2_contig7304.15496.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=1044bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7304:276..3063- (Ectocarpus fasciculatus EfasUO2)
ATGAGCAACGGAGACACTGTTCGAATCAGCCAAGGCATCTGCGCGATGGG
CGAGGAAACCGGCCATCAGTCGCCATTCCGCTGCGCTGAGGATTCGACGC
TTGCGCTACAGCCACCTAAACATGGCATGCCACAAAAAAAGGCGAACAAA
AACAAGCGGAAACGCCAACAACGTGACGTCCAGCCCGCACCGCGGAAAAG
CGCACGCCTCATCGCCAAAGCCGAGGCCGCAGCCTTGGCAATTTCTCCCG
TCAACATCGTGGCCATCAGCAGTATCCCCAAAAAGAAAATCAAAGACCAG
AGCAACCCCGACCACGCGGTATCAACGATTGGGACGCCTCGGTCATCCAC
GCATGCCATTGGAAAGCAAGAAGAGCCAAGTGTCAGTTGCTTCGACAAAG
AAGAGGGGCTCACGCCAACGGAACTGATGGAAGCTTTCGGTTGTACTGAC
TATAGCAAACCGGACCAAGTGGCATCAGCGATTGGGAGGCCTCCGTCATC
GATGCATGCTACTGGAAAGCAAGAAGAGCCGAGTGACCGTTGCTTCGACG
AGGAAAGAGCGCTCATGCCGACCGAACCCACGGAAATGTCCCGTTGTATC
GATGATGATAGCAAACCGGACCAAGCGGCGTCAACGATTGGGAGGCCTCC
GGCACCGATGCATGAGCCGAGTGTCAATTGCTTCGGCGAGGAAACGCCAA
CGGAAATGCTGGACGTTTCCCGTTGTACCATTTATGGCAAACCGGACCAA
GCAACATCAGCGATTGGGAGGCCTGCGTCACCGATGCAGGAAGAGCCCAA
CGATAGTTGCTTCGACGAGACAAAGGCGCTCACTTCAATGGACCTGATGG
AAGCTTCCCGTTGTACCGACGATGAGGGGGAAATTTCCACGACCACACAA
CCGGAACTGCTTCCGGTCTTCCTCTTGGCCTTCCTACACGAAGACCAAAT
ACTCGATGGCGACGGGGAGAAGGGCTGGGTGATGGACGCGAAGGAGGGCA
AAGTGATGGACGCAGTAAAGGCCATCCAAGACGCGGCGCCCTGA
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