mRNA_E_fasciculatus_S2_contig7303.15495.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7303.15495.1
Unique NamemRNA_E_fasciculatus_S2_contig7303.15495.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig7303.15495.1 vs.
Match: WW (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXY0_9PHAE)

HSP 1 Score: 336 bits (861), Expect = 8.250e-102
Identity = 252/286 (88.11%), Postives = 254/286 (88.81%), Query Frame = 1 
Query:    4 AEYGGFPAGSRALVPSNGGAPRGGLEVKEQGLQLVKGAWARILVGKDKTRAALHDAKEKAGVAASTASYKIKNTMGSVTSRVADVLEGDPQGLAGPYGQPPQDDYYGEPGMVAGGQQQQDPRSWQGGAPQNGYREGGVPHPGQDPRAAQAGNGGGYPGYSSNQGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPRGEPQGGGRGFDGGSSYGPPVGRGSAPAGGAGGGMASYPGQAPQXXXXXXXXXXXXXXXXX---DWQKDGDGSLFW 852
            AEYGGFPAGSRALVP+NGGAPRGGLEVKEQGLQLVKGAWARILVGKDKTRAALHDAKEKAGVAASTA+YKIKNTMGSVTSRVADVLEGDPQGLAGPYGQPPQD YYGEP M AGG QQQ PRSWQG APQNGYREGGVP PGQDPRAA AGNGGGYPGY  NQG        XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   PRGEPQG  RGFDGGSSYGPPVGRG  P GGAG  M SYPGQAPQXXXXXXXXXXXXXXXXX   DWQKDGDGSLFW
Sbjct:  471 AEYGGFPAGSRALVPNNGGAPRGGLEVKEQGLQLVKGAWARILVGKDKTRAALHDAKEKAGVAASTATYKIKNTMGSVTSRVADVLEGDPQGLAGPYGQPPQD-YYGEPRMGAGGGQQQHPRSWQG-APQNGYREGGVPRPGQDPRAAPAGNGGGYPGYQ-NQGAGVSAGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---PRGEPQGV-RGFDGGSSYGPPVGRGGVPPGGAGASMGSYPGQAPQXXXXXXXXXXXXXXXXXXXXDWQKDGDGSLFW 749
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BLAST of mRNA_E_fasciculatus_S2_contig7303.15495.1 vs.
Match: WW (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJY1_ECTSI)

HSP 1 Score: 292 bits (747), Expect = 1.680e-85
Identity = 154/164 (93.90%), Postives = 158/164 (96.34%), Query Frame = 1 
Query:    4 AEYGGFPAGSRALVPSNGGAPRGGLEVKEQGLQLVKGAWARILVGKDKTRAALHDAKEKAGVAASTASYKIKNTMGSVTSRVADVLEGDPQGLAGPYGQPPQDDYYGEPGMVAGGQQQQDPRSWQGGAPQNGYREGGVPHPGQDPRAAQAGNGGGYPGYSSNQG 495
            AEYGGFPAGSRALVPSNGGAPRGGLEVKEQGLQLVKGAWARILVGKDKT AAL++AKEKAG+AASTASYKIKNTMGSVTSRVADVLEGDPQGLAGPYGQPPQ+DYYGEPGM AGGQQQQDPRSWQG APQNGYREGGVPHPGQDPRAA AGNGGGYPGY  NQG
Sbjct:  525 AEYGGFPAGSRALVPSNGGAPRGGLEVKEQGLQLVKGAWARILVGKDKTTAALYEAKEKAGIAASTASYKIKNTMGSVTSRVADVLEGDPQGLAGPYGQPPQEDYYGEPGMGAGGQQQQDPRSWQG-APQNGYREGGVPHPGQDPRAAPAGNGGGYPGYQ-NQG 686
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BLAST of mRNA_E_fasciculatus_S2_contig7303.15495.1 vs.
Match: WW (domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5N4_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 1.780e-9
Identity = 46/112 (41.07%), Postives = 67/112 (59.82%), Query Frame = 1 
Query:   10 YGGFPAGSRALVPSNGG---APRGGLEVKEQGLQLVKGAWARILVGKDKTRAALHDAKEKA---------GVAAST--ASYKIKNTMGSVTSRVADVLEGDPQGLAGPYGQP 303
            YGG      ALVP+  G   A  GG  V++ GLQLV+GAW R+LVGKD+  A L  A+E+          G+A++T  A  ++++T+G VT RV  +L+ + + + GPYG P
Sbjct:  502 YGGXXGEYGALVPAGRGGSSAQGGGASVRDTGLQLVRGAWGRLLVGKDRGAALLSSARERVSEGAAAASTGIASATWAAGARVRDTVGGVTQRVGTLLDANGRRVDGPYGPP 613
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7303.15495.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
WW8.250e-10288.11domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
WW1.680e-8593.90domain-containing protein n=1 Tax=Ectocarpus silic... [more]
WW1.780e-941.07domain-containing protein n=1 Tax=Tribonema minus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7303contigE_fasciculatus_S2_contig7303:218..4276 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start0
Model size1953
Hectar predicted targeting categoryother localisation
Exons4
Cds size855
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842394.7289073-CDS-E_fasciculatus_S2_contig7303:217..3101696842394.7289073-CDS-E_fasciculatus_S2_contig7303:217..310Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7303 218..310 +
1696842394.744119-CDS-E_fasciculatus_S2_contig7303:845..9421696842394.744119-CDS-E_fasciculatus_S2_contig7303:845..942Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7303 846..942 +
1696842394.7562459-CDS-E_fasciculatus_S2_contig7303:1623..16781696842394.7562459-CDS-E_fasciculatus_S2_contig7303:1623..1678Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7303 1624..1678 +
1696842394.7661328-CDS-E_fasciculatus_S2_contig7303:2569..31791696842394.7661328-CDS-E_fasciculatus_S2_contig7303:2569..3179Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7303 2570..3179 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842394.7763822-UTR-E_fasciculatus_S2_contig7303:3179..42761696842394.7763822-UTR-E_fasciculatus_S2_contig7303:3179..4276Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig7303 3180..4276 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7303.15495.1prot_E_fasciculatus_S2_contig7303.15495.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7303 218..3179 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7303.15495.1

>prot_E_fasciculatus_S2_contig7303.15495.1 ID=prot_E_fasciculatus_S2_contig7303.15495.1|Name=mRNA_E_fasciculatus_S2_contig7303.15495.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=285bp
KAEYGGFPAGSRALVPSNGGAPRGGLEVKEQGLQLVKGAWARILVGKDKT
RAALHDAKEKAGVAASTASYKIKNTMGSVTSRVADVLEGDPQGLAGPYGQ
PPQDDYYGEPGMVAGGQQQQDPRSWQGGAPQNGYREGGVPHPGQDPRAAQ
AGNGGGYPGYSSNQGAGASAGAGGGGGGYGGNGARGVAGGYPGPPFQGQA
GQQQQQQQQQPRGEPQGGGRGFDGGSSYGPPVGRGSAPAGGAGGGMASYP
GQAPQPQQQQRPQGQGQPGGGGDWQKDGDGSLFW*
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mRNA from alignment at E_fasciculatus_S2_contig7303:218..4276+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7303.15495.1 ID=mRNA_E_fasciculatus_S2_contig7303.15495.1|Name=mRNA_E_fasciculatus_S2_contig7303.15495.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=4059bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7303:218..4276+ (Ectocarpus fasciculatus EfasUO2)
AAGGCTGAGTACGGCGGTTTCCCGGCGGGCTCTCGCGCCCTGGTGCCGAG
CAACGGCGGTGCTCCGCGTGGGGGGTTGGAAGTCAAGGAGCAGGTAAGCC
GCGCTCGTCACTTGGGGCCTGTCGTGGTGGTGATGTCCACTTCGTTGTCA
TTGGGCTCTAGAGACTCTGTTGTTCCGCTTGGCACCACTGAATCTTTGGT
GTGAGGTCTTAACACAGACTCAAATTTTGATCAGGAGTTTGCTGAAACTT
GGCCAGAATGACTTCGAATGCATCCCCTAATGAACAGTCCCCGAGAGAAC
AGCGTTTTGTGATGTTGCGTGCTTTTTCTAATAAGGAGAACGAACCGTCA
GGCACTGCTCCCGTCGGTGGGATGTTGTTCGTGCTCGGTAAGGTTAGCGC
CTCCCCTTCCGCGGTTGCTCTGCAACAAAGCTGCTTGTATTTCAAGCGTC
CATCTAGCGCAACCTGTTTCGCTAACCAGGTCGCCTTTGTCCGTGTACCG
TTCCCTTGCCCATCGCCGTTCCCTCGTCTGTTGCCGCTGCTGGTGATGCT
GACGCTGGTGGTGATGCTGCTGCAACTGAATGGAAACAAAACGAAACGGA
ACGGAACGGAACGGAAACTGTCGAGCAGGGGCTGCAGCTGGTGAAGGGGG
CGTGGGCGCGCATCCTGGTCGGCAAGGACAAGACAAGGGCGGCGCTTCAC
GACGCCAAGGAGAAGGCTGGCGTCGGTGAGGGCACCCATCCCGAATCTAC
CACGCTTCGAGCTCGGCGAAGCGCGCAGCAAGAGTCCTCACGTGCACTAC
ACACGGCCGTTTTTTGGCTGGGATTGATCGCTGCTCTGAACGAAGAAGCC
AGTTGTGCAGTTGTTTCCTTACTGAATGGCAGTTGTTTCCTTACTGAATG
GAACAGGCCGTTCGTTTGCTGGCTGCCTGCGATGATCGGGGGAAATCTCG
TTTGACCTGGCGTTGCTTTACTGACAACGTGCCTCTTTTATTCGCGGTGC
GCATAGAGTTCTCCACGCCGAGCACGAAAGCTGCCAAGCACGACCATCAC
CGTTTCTATTATGTTCGAAAGTGGTAAAACAGCCCCCCCCCCCCCCCCGA
CCATCTGGTCTGGCACAGCAAGACGCGAGCATGATGATGGCCAGCTTTTG
GGTCATCCTTGTGAAACCTAGTCTGGGCCGGCGAAAACCCAGCATGTATC
GCTCCGTCCCGGTATTTGTATGGTACCGACTACCACCTCGCTTGGGCCCA
ACACGTTCCTGGCACGCCCCGTGTACCTTCTTGTTCGTGTACCTTCTTGT
TCGACACCACCGCCGTGCCGCTTGCATGCTGCTGTTTGTTTCGCGCGGTG
CGCTCCTGCTATATTTTTTGTGTGTTCTGTTTTTCGGGAAATGTCACCCT
CACCAGCGGCGTCAACGGCAAGCTATAAGATCAAGAACACCATGGGCAGC
GTCACGAGCCGGTGAGAGTTTTGTTGTGGAGAAACAATTTTTCGGGTGTC
GTCCAACTCGGGAGCAAGCCTCGTGTGGTAGGGGCCGTGGGATTTCACGG
CACAGGATCTATTTAGTCAGGGCGGCTGCAGCTTCGTTCCTCCCGCTGCT
CTGCCGCAGCATTGGCCTTTCCTTTCCCTCGAGAAAACAAGTAGTGTCCA
CCGCTGCTGGCATCCTTGTTGTCGCGGCTTCTCCGAATCGTGTTTGACTG
CCAACAAAGCTGATTCTCGTTGGATTGTTCATGTCTATGTCTCTCTCCCC
TGGCCCATTTTGCGCACATGTAAAGTGCTGTGAGACGGAGAAGTCTGTCT
CCACTATTATCTGAGTTGCATCAGGAGATGTTTTTCGTTGGCGTGTGGGT
TGGAGTGCACGTCGGACTCGCCTCTCGCCAGAGGGGGGGGGGAGGGGGGG
CACGGGCGTTTGGTAAGCCCCGGTCGGCTCCTAGTGCTCTGTGCTCGCAA
CCAGGCTATCAGTGGACGAACAGTCCGTCGGAGGTAGCTGCCGCAGCCCT
GACTGGCTCCTACCTCATGTGATAGCCTGCCGGAGCAGCAGTGCCCAACA
AGTCGTTCATGAGGTGCACAGGTGCTGCCTTCTTATTTTCTGTGCCGTGG
TAGACACAATCGAAGAAGCGGGCCCCTCGCCCCCATACCTCACTTGCCGC
GTATGCAGAGAAACTGAGCTTGTACTAAAGCAAGACGGCGTGTGTACGCA
TTGTCAATTCCTGCATCATCATTCCCGCACCGAAACACTCTCAAATCACG
CACGTACCCGTCTTCCGTATAGCCAGGCTGCAGTTTCCAACCCCCGCCCC
CACCCCCCCCCCCCTCCTCGGTCTTCCGCGTCGCCCCTTCTTCTGCCCCC
AGCGTGGCCGACGTCCTGGAGGGCGACCCCCAAGGCCTTGCCGGTCCCTA
CGGCCAGCCACCCCAAGACGACTACTACGGAGAACCGGGGATGGTGGCCG
GCGGACAGCAGCAGCAAGACCCACGCTCCTGGCAGGGGGGGGCGCCGCAG
AATGGGTACCGTGAAGGCGGCGTACCTCACCCAGGACAGGACCCCCGCGC
AGCGCAAGCGGGCAACGGTGGTGGATATCCCGGGTACAGCAGCAACCAGG
GCGCTGGCGCATCGGCGGGCGCTGGCGGCGGTGGTGGTGGGTACGGGGGC
AACGGTGCGCGCGGGGTGGCGGGCGGTTACCCCGGGCCCCCTTTCCAAGG
GCAAGCAGGACAGCAGCAACAGCAGCAGCAACAGCAGCCTAGAGGAGAGC
CGCAAGGAGGAGGTCGCGGGTTCGATGGCGGCAGCAGCTATGGACCCCCG
GTTGGGCGTGGTAGCGCGCCGGCCGGTGGCGCTGGCGGGGGCATGGCGTC
GTACCCGGGGCAAGCACCGCAACCGCAGCAGCAGCAGAGACCGCAGGGGC
AAGGGCAGCCGGGGGGCGGAGGCGATTGGCAAAAGGACGGGGATGGTAGT
CTGTTTTGGTGATAATGTAGCTTGTTACTGTAGTCAGAGGCACCGCAGTG
GCCATTGGTTTACTCGGGGATGTGTCAGAACTGTTCTAGTGGCAGTATTG
GTAGGAGCGGTGTTGCGAAGAGGGAAGTGGTTGGCCGTGATAAAAATAGA
AGAATCAAAGAAGAGATCGGAGAAGAAGAAGGAGTAGATGTGGTGCAGCA
TGCGGTGGAGGTGCTTGTTGGCTCTTCTGTTCAACCCGATCGTAGTGTCG
TAGTGTGTGTGCCGGAATTCCGCTTGAACGACACGCGTCGTCAACGCTAA
AGAGGGGAAGCGCCGCATAGCTGTGCATGGCGACTGACGTGTGCTATCAC
TCCACGGCTGCCGCGGTGATTTGTGTTACTAACATCGGAGACGGTTCTCC
TGGCGGTTTTCCGAAGCCATACAGAATCAATCCCGAGAGCTTTGTGATCA
CGCTCGCACCACATTCGTTCATTCGAGACGATCAGGATAAAAACGCATGC
ATGTTTCGTGCGCATGACCAGTCAGTATCTCTCCTGTGCTTTGGTCGGCA
TGCTTTAGGTTCACAGCGGCATGCTTTAGGTTCACAGCGGTCGGGCGCGA
GACTGGATAGTCACTCGCGGGCAAGAATGAAACGACCCGTTGTGTTTTTG
CGCTCATGAGGCCTTGTTCTGGAAGAGGATGATCCGAAGTGCCGCCGGTT
TGGGCATGAAGATATTCAGTCGGTGGAGGCACCCACATCCGTCGCTAAAG
AGTGTGCTGTAAGATGGTCGGTGTAGGAGAGGAATCCTGCCACATCAACA
GTAATACGTGGTCATTTGTCAGTTGTATAACTTGGCAGCTCTGCAGTTTA
GTCCAGGCCTTCTAGAATTTGTCGAGAATGAATGAAATGGTTATTTTTTG
TAGACGTCGGTGTATCACACCAGATTTTTTACTTTCGTCCCGTCACTTCC
ACCACCGCGCATTTATCCACATCCACCATTCCGGAGCGCTCTTCCCCTCA
ACAGCGACGTGGGTGCGCTACGGTTTTCGGTCAATCGTGGCGCTTACTTG
AGCTCACATGTGGTTTTCTCTAAGTGAGGAGAAAGACATGCGACAAGAAT
GATGCCAGA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7303:218..4276+

>mRNA_E_fasciculatus_S2_contig7303.15495.1 ID=mRNA_E_fasciculatus_S2_contig7303.15495.1|Name=mRNA_E_fasciculatus_S2_contig7303.15495.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=855bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7303:218..4276+ (Ectocarpus fasciculatus EfasUO2)
AAGGCTGAGTACGGCGGTTTCCCGGCGGGCTCTCGCGCCCTGGTGCCGAG
CAACGGCGGTGCTCCGCGTGGGGGGTTGGAAGTCAAGGAGCAGGGGCTGC
AGCTGGTGAAGGGGGCGTGGGCGCGCATCCTGGTCGGCAAGGACAAGACA
AGGGCGGCGCTTCACGACGCCAAGGAGAAGGCTGGCGTCGCGGCGTCAAC
GGCAAGCTATAAGATCAAGAACACCATGGGCAGCGTCACGAGCCGCGTGG
CCGACGTCCTGGAGGGCGACCCCCAAGGCCTTGCCGGTCCCTACGGCCAG
CCACCCCAAGACGACTACTACGGAGAACCGGGGATGGTGGCCGGCGGACA
GCAGCAGCAAGACCCACGCTCCTGGCAGGGGGGGGCGCCGCAGAATGGGT
ACCGTGAAGGCGGCGTACCTCACCCAGGACAGGACCCCCGCGCAGCGCAA
GCGGGCAACGGTGGTGGATATCCCGGGTACAGCAGCAACCAGGGCGCTGG
CGCATCGGCGGGCGCTGGCGGCGGTGGTGGTGGGTACGGGGGCAACGGTG
CGCGCGGGGTGGCGGGCGGTTACCCCGGGCCCCCTTTCCAAGGGCAAGCA
GGACAGCAGCAACAGCAGCAGCAACAGCAGCCTAGAGGAGAGCCGCAAGG
AGGAGGTCGCGGGTTCGATGGCGGCAGCAGCTATGGACCCCCGGTTGGGC
GTGGTAGCGCGCCGGCCGGTGGCGCTGGCGGGGGCATGGCGTCGTACCCG
GGGCAAGCACCGCAACCGCAGCAGCAGCAGAGACCGCAGGGGCAAGGGCA
GCCGGGGGGCGGAGGCGATTGGCAAAAGGACGGGGATGGTAGTCTGTTTT
GGTGA
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