mRNA_E_fasciculatus_S2_contig73.15491.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig73.15491.1
Unique NamemRNA_E_fasciculatus_S2_contig73.15491.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig73.15491.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJV6_ECTSI)

HSP 1 Score: 124 bits (310), Expect = 2.190e-34
Identity = 62/88 (70.45%), Postives = 69/88 (78.41%), Query Frame = 3 
Query:   12 RAHTWE*SGAAFPRHHNLRDMVW*FTKAHMASTRQDLAERQRMGDGRLHENFVAQVVTPALLHAANDIAALPINGTGTHGSIACKCTR 275
            +AHT E SG  FPRH NLRDMV   TKAHMASTRQDL+ERQ + + RLHE+FVAQVVT ALLH AN+IAA P+N  G H SI CKCTR
Sbjct:   29 KAHTQEQSGTTFPRHRNLRDMVLRVTKAHMASTRQDLSERQLLEEDRLHEDFVAQVVTSALLHTANNIAAHPVNEVGKHESIVCKCTR 116
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BLAST of mRNA_E_fasciculatus_S2_contig73.15491.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF40_9PHAE)

HSP 1 Score: 85.5 bits (210), Expect = 4.230e-18
Identity = 42/68 (61.76%), Postives = 51/68 (75.00%), Query Frame = 3 
Query:   72 MVW*FTKAHMASTRQDLAERQRMGDGRLHENFVAQVVTPALLHAANDIAALPINGTGTHGSIACKCTR 275
            ++W FTKA+ ASTR+ L     +G  RL E+F+ QVVTPALLHAANDIAALP+N  GTH +I CK TR
Sbjct:   82 VMWRFTKAYQASTRKTLTLGYLLGPERLKEDFLGQVVTPALLHAANDIAALPVNEIGTHETIVCKVTR 149
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BLAST of mRNA_E_fasciculatus_S2_contig73.15491.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5R4_9PHAE)

HSP 1 Score: 85.5 bits (210), Expect = 1.730e-17
Identity = 42/68 (61.76%), Postives = 51/68 (75.00%), Query Frame = 3 
Query:   72 MVW*FTKAHMASTRQDLAERQRMGDGRLHENFVAQVVTPALLHAANDIAALPINGTGTHGSIACKCTR 275
            ++W FTKAH ASTR+ L     +G  RL ++F+ QVVTPALLHAANDIAALP+N  GTH +I CK TR
Sbjct:  339 IMWRFTKAHQASTRKALTLGFLLGPERLKDDFLGQVVTPALLHAANDIAALPVNEIGTHETIVCKVTR 406
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig73.15491.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR20_9PHAE)

HSP 1 Score: 84.7 bits (208), Expect = 2.030e-17
Identity = 42/68 (61.76%), Postives = 50/68 (73.53%), Query Frame = 3 
Query:   72 MVW*FTKAHMASTRQDLAERQRMGDGRLHENFVAQVVTPALLHAANDIAALPINGTGTHGSIACKCTR 275
            ++W FTKAH ASTR+ L     +G  RL E+F+ QVVTPALLHAANDIAALP+N  GTH +I CK  R
Sbjct:  189 IMWRFTKAHQASTRKVLTLGYLLGPERLKEDFLGQVVTPALLHAANDIAALPVNEIGTHETIVCKVIR 256
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BLAST of mRNA_E_fasciculatus_S2_contig73.15491.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUZ7_ECTSI)

HSP 1 Score: 84.3 bits (207), Expect = 4.470e-17
Identity = 42/68 (61.76%), Postives = 50/68 (73.53%), Query Frame = 3 
Query:   72 MVW*FTKAHMASTRQDLAERQRMGDGRLHENFVAQVVTPALLHAANDIAALPINGTGTHGSIACKCTR 275
            ++W FTKAH ASTR+ L     +G  RL E+F+ QVVTPALL AANDIAALP+N  GTH +I CK TR
Sbjct:  372 IMWRFTKAHQASTRKALTLGYLLGPERLKEDFLGQVVTPALLQAANDIAALPVNEIGTHETIVCKVTR 439
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig73.15491.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKM5_9PHAE)

HSP 1 Score: 58.2 bits (139), Expect = 4.430e-8
Identity = 27/34 (79.41%), Postives = 29/34 (85.29%), Query Frame = 3 
Query:  174 QVVTPALLHAANDIAALPINGTGTHGSIACKCTR 275
            QVVTPALLHAANDIAALP+N  GTH +I CK TR
Sbjct:    7 QVVTPALLHAANDIAALPVNEIGTHETIVCKVTR 40
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig73.15491.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHD1_9PHAE)

HSP 1 Score: 57.4 bits (137), Expect = 8.980e-8
Identity = 29/44 (65.91%), Postives = 32/44 (72.73%), Query Frame = 3 
Query:  144 DGRLHENFVAQVVTPALLHAANDIAALPINGTGTHGSIACKCTR 275
            +GRL       VVTPALLHAANDIAALP+N  GTH +I CK TR
Sbjct:  110 EGRLPLTGDEIVVTPALLHAANDIAALPVNEIGTHETIVCKVTR 153
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig73.15491.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L779_9PHAE)

HSP 1 Score: 51.6 bits (122), Expect = 1.030e-6
Identity = 27/34 (79.41%), Postives = 28/34 (82.35%), Query Frame = 2 
Query:  173 SGRHAGSTARRERHRRSPDQWHWHTREHRVQVHE 274
            +GRHAGSTARRERH R P Q  W TREHRVQVHE
Sbjct:   20 AGRHAGSTARRERHSRPPGQRDWQTREHRVQVHE 53
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig73.15491.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA09_9PHAE)

HSP 1 Score: 50.8 bits (120), Expect = 2.020e-5
Identity = 28/58 (48.28%), Postives = 38/58 (65.52%), Query Frame = 3 
Query:  114 QDLAERQRMGD--GRLHEN--FVAQVVTPALLHAANDIAALPINGTGTHGSIACKCTR 275
            +++  +Q+ G    RLH +    + VVTPALLHAA DIAALP+   G+  S+ CKCTR
Sbjct:   84 RNIRRKQQHGTRTARLHVSRCMHSSVVTPALLHAAKDIAALPVAEIGSLESVVCKCTR 141
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig73.15491.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
Uncharacterized2.190e-3470.45protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized4.230e-1861.76protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized1.730e-1761.76protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized2.030e-1761.76protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized4.470e-1761.76protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized4.430e-879.41protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized8.980e-865.91protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized1.030e-679.41protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized2.020e-548.28protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig73contigE_fasciculatus_S2_contig73:53542..54855 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop0
Start0
Model size279
Hectar predicted targeting categoryother localisation
Exons3
Cds size276
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842393.653912-CDS-E_fasciculatus_S2_contig73:53541..536081696842393.653912-CDS-E_fasciculatus_S2_contig73:53541..53608Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig73 53542..53608 +
1696842393.6678693-CDS-E_fasciculatus_S2_contig73:54403..545121696842393.6678693-CDS-E_fasciculatus_S2_contig73:54403..54512Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig73 54404..54512 +
1696842393.6779702-CDS-E_fasciculatus_S2_contig73:54753..548531696842393.6779702-CDS-E_fasciculatus_S2_contig73:54753..54853Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig73 54754..54853 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig73.15491.1prot_E_fasciculatus_S2_contig73.15491.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig73 53542..54853 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig73.15491.1

>prot_E_fasciculatus_S2_contig73.15491.1 ID=prot_E_fasciculatus_S2_contig73.15491.1|Name=mRNA_E_fasciculatus_S2_contig73.15491.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=92bp
RTAAGHTLGSNRAQHFPGITISETWSGDSPRRTWRQHARTWPRGNVWETV
GYTRTSWLRSSRRLYCTPRTTSPLSRSMALAHTGASRASARG
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mRNA from alignment at E_fasciculatus_S2_contig73:53542..54855+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig73.15491.1 ID=mRNA_E_fasciculatus_S2_contig73.15491.1|Name=mRNA_E_fasciculatus_S2_contig73.15491.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1314bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig73:53542..54855+ (Ectocarpus fasciculatus EfasUO2)
AGGACAGCCGCAGGGCACACACTTGGGAGTAATCGGGCGCAGCATTTCCC
CGGCATCACAATCTCAGGTGAAGGCTGCCTCGAACGTACATTCGCCCGCA
CTCATCACACCCGCACATACGGAACACAGCAGCAGCCAATGTATGTAGAA
GTACAAATATTGTCCAACGGCGAATAAAGAAAGAACGGCATGGCAGCAGC
AGTCAGTCTCTGTTGGTGCGTGTAGCGTACGTCACGTTCGAATCCTTGCA
CTGTCTTGCACGCTTGCGCACATGCGCGTCTCTGAAATCGCGTCGCGGAC
GCATGTTTGTCTTGACGCGTTCCTTAGCACAAAGCTCTACAAAGAGAAAT
GATAGTGTCTGTAGGTCGCGTAAGGTACCACACCCGTGGTATCTTCCGTT
GTATCTTACGCTGTACAGCAGTATGGAACCCAACCCTCTGCTACGTGCGA
CTCGTCTGCGCATATCTCCTGCCTGTATTTGTCTAGTTCGACCTACATAT
TATATATGGCACCACGACCGTCATGACTGGAATCATTGCTGTTTGTACCA
TGAATGCTGATAATCCGGCGTTCGTTGTGTTTTACACCCCTCTCACATCC
AGCCGTATGCAACCTCGCCACATGTAGATCAGATTTCTCGCATGGATTGT
GCCCGCTGTTATCTTGCATTATTTCGATGGAAGAAGTAATTGGGTGGTGT
CGTTCGGTGCTATTCAACTGTGTGTGTTGTAACACGAGCGGTTCGGATAA
TGAGATATCTGTGCCCTGTAGGGAGTGCAGATGTGGTCTTACCCAGCCAA
TGTTCTGTTGTGCTCGGTCTCGTGCGTGCCTGCTGTGTTTGTTGGCTTTT
TGGGGGTGCTAGAGACATGGTCTGGTGATTCACCAAGGCGCACATGGCGT
CAACACGCCAGGACCTGGCCGAGAGGCAACGTATGGGAGACGGTCGGCTA
CACGAGAACTTCGTGGCTCAGGTAATGAATTGTTTCCATCTTGGTTAGCC
CCCCTCAACTCTCTTCTTCACACCTCTGTACACGATCGCAGTTCAAACCC
ACCGGAGCATGTACAAAACGTTTCGATTGCATGGCAGGTAGCATCTGTAG
GAAGCAGCAGCACGGTGCACACACTGCACCGCCACACATGTCTCCACATG
CGTACATTCAGCAGCACCTTTCGTCCCCCCCCTCTTCCTGCTGACGTCAT
CTTGTACACCAGGTCGTCACGCCGGCTCTACTGCACGCCGCGAACGACAT
CGCCGCTCTCCCGATCAATGGCACTGGCACACACGGGAGCATCGCGTGCA
AGTGCACGAGGAAG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig73:53542..54855+

>mRNA_E_fasciculatus_S2_contig73.15491.1 ID=mRNA_E_fasciculatus_S2_contig73.15491.1|Name=mRNA_E_fasciculatus_S2_contig73.15491.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=276bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig73:53542..54855+ (Ectocarpus fasciculatus EfasUO2)
AGGACAGCCGCAGGGCACACACTTGGGAGTAATCGGGCGCAGCATTTCCC
CGGCATCACAATCTCAGAGACATGGTCTGGTGATTCACCAAGGCGCACAT
GGCGTCAACACGCCAGGACCTGGCCGAGAGGCAACGTATGGGAGACGGTC
GGCTACACGAGAACTTCGTGGCTCAGGTCGTCACGCCGGCTCTACTGCAC
GCCGCGAACGACATCGCCGCTCTCCCGATCAATGGCACTGGCACACACGG
GAGCATCGCGTGCAAGTGCACGAGGA
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