mRNA_E_fasciculatus_S2_contig729.15482.1 (mRNA) Ectocarpus fasciculatus EfasUO2
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Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig729.15482.1 vs.
Match: Fe-S-cluster (oxidoreductase-like n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LKL6_ECTSI) HSP 1 Score: 413 bits (1061), Expect = 8.960e-138 Identity = 203/216 (93.98%), Postives = 207/216 (95.83%), Query Frame = 1
Query: 1 RRAALPLAAASDGSSRSNSDSSRPETTAGFGSRASRRSKKGRINKKTDGKGGLATAAPVVVLKRSSRWACVKNCGACCYLAPDERPDLAEYLPDPEEFDLYISMTGDDGWCKHFDKESRACTVYSDRPRFCRVETETFGSMYGVEPEDMDDFCSSCCNEQISDVYGAESKELRIFNEALAALERGERPKPELSAFGGDLRGQGEGQIRDWGLEGDR 648
RRAALPLAAASDG S SNSDS RPETTAGFGSRASRRSKKGRINK TD KGGLATA VV+LKRSSRWACVKNCGACCYLAPDERPDLAEYLPDPEEFDLY+SMTG DGWCKHFDKESRACTVYSDRPRFCRVETETFGSMYGVEPEDMDDFCSSCCNEQISDVYGAESKELR+FNEALAALERGERPKP+LSAFGGDLRGQGEGQIRDWGLE DR
Sbjct: 67 RRAALPLAAASDGGSGSNSDSIRPETTAGFGSRASRRSKKGRINKNTDSKGGLATAPAVVLLKRSSRWACVKNCGACCYLAPDERPDLAEYLPDPEEFDLYMSMTGSDGWCKHFDKESRACTVYSDRPRFCRVETETFGSMYGVEPEDMDDFCSSCCNEQISDVYGAESKELRVFNEALAALERGERPKPDLSAFGGDLRGQGEGQIRDWGLEEDR 282
BLAST of mRNA_E_fasciculatus_S2_contig729.15482.1 vs.
Match: Hypothetical (protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3K3R1_9STRA) HSP 1 Score: 172 bits (437), Expect = 2.880e-46 Identity = 77/133 (57.89%), Postives = 97/133 (72.93%), Query Frame = 1
Query: 181 VLKRSSRWACVKNCGACCYLAPDERPDLAEYLPDPEEFDLYISMTGDDGWCKHFDKESRACTVYSDRPRFCRVETETFGSMYGVEPEDMDDFCSSCCNEQISDVYGAESKELRIFNEALAALERGERPKPELS 579
+LK++ RWACV+NCGACCYL P ER DL E+L DP+E Y SM G+DGWC +FDK +R CT+Y DRP FC+VE +F SMYG+ +D+D+FC+SCC E ISDVYG S+E+R FN AL +L R K S
Sbjct: 68 ILKKTKRWACVENCGACCYLEPSEREDLNEWL-DPDERIQYESMVGNDGWCVYFDKITRLCTIYDDRPDFCKVEANSFQSMYGIHSDDLDNFCTSCCREHISDVYGLNSQEMRRFNGALKSLRRSASQKARAS 199
BLAST of mRNA_E_fasciculatus_S2_contig729.15482.1 vs.
Match: Uncharacterized (protein family UPF0153 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TMW6_9STRA) HSP 1 Score: 171 bits (434), Expect = 1.290e-44 Identity = 78/129 (60.47%), Postives = 93/129 (72.09%), Query Frame = 1
Query: 163 TAAPVVVLKRSSRWACVKNCGACCYLAPDERPDLAEYLPDPEEFDLYISMTGDDGWCKHFDKESRACTVYSDRPRFCRVETETFGSMYGVEPEDMDDFCSSCCNEQISDVYGAESKELRIFNEALAALE 549
T+ P V LK S +WACV NCGACCYLAP ERP L +Y DP++ Y SM GDDGWC H+DK +RACTV+ DRP FCRVE +TF MYGV +MD FC+SCC EQI+DVYG S E+ FN A+ L+
Sbjct: 133 TSTPAV-LKVSKKWACVANCGACCYLAPSERPYLLDYFDDPKDLAAYNSMVGDDGWCIHYDKAARACTVFEDRPWFCRVEGKTFEKMYGVTGSEMDKFCTSCCREQIADVYGTTSGEMLSFNMAIKHLK 260
BLAST of mRNA_E_fasciculatus_S2_contig729.15482.1 vs.
Match: Fe-S (cluster protein n=3 Tax=Nostocales TaxID=1161 RepID=A0A139X7I9_9CYAN) HSP 1 Score: 160 bits (404), Expect = 5.860e-43 Identity = 68/112 (60.71%), Postives = 86/112 (76.79%), Query Frame = 1
Query: 202 WACVKNCGACCYLAPDERPDLAEYLPDPEEFDLYISMTGDDGWCKHFDKESRACTVYSDRPRFCRVETETFGSMYGVEPEDMDDFCSSCCNEQISDVYGAESKELRIFNEAL 537
W CVK CGACCYL P ERPDL EYL P+E +LY+SM GDDGWC ++DKE+R C +Y +RPRFCRVETE F MYG+EPE+++DF CC++QI VYG S E+ F++A+
Sbjct: 4 WQCVKQCGACCYLDPAERPDLDEYL-SPKELELYLSMVGDDGWCVNYDKENRECRIYPNRPRFCRVETEVFQDMYGIEPEELNDFAIDCCHQQIEGVYGDRSLEMLRFDQAV 114
BLAST of mRNA_E_fasciculatus_S2_contig729.15482.1 vs.
Match: YkgJ (family cysteine cluster protein n=1 Tax=Sphaerospermopsis aphanizomenoides TaxID=459663 RepID=UPI0019087D7A) HSP 1 Score: 159 bits (403), Expect = 8.120e-43 Identity = 69/114 (60.53%), Postives = 86/114 (75.44%), Query Frame = 1
Query: 196 SRWACVKNCGACCYLAPDERPDLAEYLPDPEEFDLYISMTGDDGWCKHFDKESRACTVYSDRPRFCRVETETFGSMYGVEPEDMDDFCSSCCNEQISDVYGAESKELRIFNEAL 537
S W CVK CGACC+L P +RPDL EYL PEE LY+SM G+DGWC +FD E+R CT+Y+DRPRFCRVE ETF MYG+EPE+++DF CC +QI VYG S E+ F++A+
Sbjct: 2 STWQCVKQCGACCHLDPADRPDLEEYL-SPEEMGLYLSMVGEDGWCVNFDHETRECTIYADRPRFCRVEAETFQDMYGIEPEELNDFAIDCCRQQIDCVYGDRSLEMIRFDQAV 114
BLAST of mRNA_E_fasciculatus_S2_contig729.15482.1 vs.
Match: Fe-S (cluster protein n=1 Tax=Limnoraphis robusta CS-951 TaxID=1637645 RepID=A0A0F5Y754_9CYAN) HSP 1 Score: 159 bits (401), Expect = 2.070e-42 Identity = 65/123 (52.85%), Postives = 90/123 (73.17%), Query Frame = 1
Query: 202 WACVKNCGACCYLAPDERPDLAEYLPDPEEFDLYISMTGDDGWCKHFDKESRACTVYSDRPRFCRVETETFGSMYGVEPEDMDDFCSSCCNEQISDVYGAESKELRIFNEALAALERGERPKP 570
W CVKNCGACCYL P ERP+L EYL DP++ +LY+S+ G+DGWC H+++E+R C +Y +RPRFCRV+++ F M+G+EPE+++DF CC +QI VYGA+S E+ FN + E E P
Sbjct: 4 WQCVKNCGACCYLEPSERPELDEYL-DPQQIELYLSLVGEDGWCIHYNQETRECRIYPNRPRFCRVQSDIFEEMFGIEPEELNDFAIDCCQQQIEGVYGADSPEMTQFNHEVDFCEEPENVTP 125
BLAST of mRNA_E_fasciculatus_S2_contig729.15482.1 vs.
Match: YkgJ (family cysteine cluster protein n=1 Tax=Nodosilinea sp. LEGE 06152 TaxID=2777966 RepID=A0A8J7EIP6_9CYAN) HSP 1 Score: 158 bits (400), Expect = 2.300e-42 Identity = 68/116 (58.62%), Postives = 84/116 (72.41%), Query Frame = 1
Query: 202 WACVKNCGACCYLAPDERPDLAEYLPDPEEFDLYISMTGDDGWCKHFDKESRACTVYSDRPRFCRVETETFGSMYGVEPEDMDDFCSSCCNEQISDVYGAESKELRIFNEALAALE 549
W CVK+CGACC+LAPDERPDL YL DP++ LYISM G DGWC H+DK R CT+Y DRP FCRV TF +M+GV +++DDF CC E I+D+YG ES E+ FN+A+ E
Sbjct: 4 WQCVKSCGACCFLAPDERPDLESYL-DPDQLALYISMVGADGWCVHYDKGDRLCTIYPDRPDFCRVTFSTFETMFGVASDELDDFAIDCCQEHIADIYGDESPEMERFNQAVGVGE 118
BLAST of mRNA_E_fasciculatus_S2_contig729.15482.1 vs.
Match: Zinc/iron-chelating (domain-containing protein n=1 Tax=Phormidium ambiguum IAM M-71 TaxID=454136 RepID=A0A1U7IRV6_9CYAN) HSP 1 Score: 157 bits (397), Expect = 5.730e-42 Identity = 66/110 (60.00%), Postives = 83/110 (75.45%), Query Frame = 1
Query: 202 WACVKNCGACCYLAPDERPDLAEYLPDPEEFDLYISMTGDDGWCKHFDKESRACTVYSDRPRFCRVETETFGSMYGVEPEDMDDFCSSCCNEQISDVYGAESKELRIFNE 531
W CVK CGACCYL P ERPDL EYL PEE + Y+SM G+ GWC +FD+ + C +YS+RPRFCRVE ETF MY +EPE+++DF CC E ISD+YGA+S E++ FN+
Sbjct: 4 WCCVKGCGACCYLEPSERPDLEEYLT-PEELEQYLSMVGEGGWCINFDRTNCECRIYSNRPRFCRVEPETFRDMYAIEPEELNDFAIECCQEHISDIYGADSPEMQHFNQ 112
BLAST of mRNA_E_fasciculatus_S2_contig729.15482.1 vs.
Match: Fe-S (cluster protein n=2 Tax=unclassified Desertifilum TaxID=2621682 RepID=A0A1E5QE50_9CYAN) HSP 1 Score: 156 bits (394), Expect = 1.520e-41 Identity = 62/112 (55.36%), Postives = 86/112 (76.79%), Query Frame = 1
Query: 196 SRWACVKNCGACCYLAPDERPDLAEYLPDPEEFDLYISMTGDDGWCKHFDKESRACTVYSDRPRFCRVETETFGSMYGVEPEDMDDFCSSCCNEQISDVYGAESKELRIFNE 531
+ W CVK CGACC+L P +RPDL +YL +PEE +Y+S+ G+DGWC HFD+++R C++Y+DRPRFCRV+ + FG +YG+EPE+++DF CC EQI VYG S E+ FN+
Sbjct: 2 ANWHCVKKCGACCHLDPTDRPDLEDYL-NPEELSVYLSLVGEDGWCIHFDQDTRQCSIYADRPRFCRVQQDVFGDLYGIEPEELNDFAIDCCREQIEGVYGERSLEMIRFNQ 112
BLAST of mRNA_E_fasciculatus_S2_contig729.15482.1 vs.
Match: YkgJ (family cysteine cluster protein n=4 Tax=Microcoleaceae TaxID=1892252 RepID=UPI001881FA71) HSP 1 Score: 154 bits (390), Expect = 6.720e-41 Identity = 66/117 (56.41%), Postives = 82/117 (70.09%), Query Frame = 1
Query: 196 SRWACVKNCGACCYLAPDERPDLAEYLPDPEEFDLYISMTGDDGWCKHFDKESRACTVYSDRPRFCRVETETFGSMYGVEPEDMDDFCSSCCNEQISDVYGAESKELRIFNEALAAL 546
+ W CVK CGACCYL P ERPDL EYL EE +LY+S+ GDDGWC +FDK +R C +Y+DRPRFCRV+ E F MYG+EP +++DF CC E I D+YG S E+ FN + L
Sbjct: 2 ANWRCVKQCGACCYLEPTERPDLDEYL-SAEELELYLSLVGDDGWCINFDKSTRECGIYADRPRFCRVDEEVFQEMYGIEPAELNDFAIDCCKEHIEDLYGDRSLEMIRFNSEVGIL 117 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig729.15482.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig729.15482.1 >prot_E_fasciculatus_S2_contig729.15482.1 ID=prot_E_fasciculatus_S2_contig729.15482.1|Name=mRNA_E_fasciculatus_S2_contig729.15482.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=217bp RRAALPLAAASDGSSRSNSDSSRPETTAGFGSRASRRSKKGRINKKTDGKback to top mRNA from alignment at E_fasciculatus_S2_contig729:16879..21312- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig729.15482.1 ID=mRNA_E_fasciculatus_S2_contig729.15482.1|Name=mRNA_E_fasciculatus_S2_contig729.15482.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=4434bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig729:16879..21312- (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig729:16879..21312- >mRNA_E_fasciculatus_S2_contig729.15482.1 ID=mRNA_E_fasciculatus_S2_contig729.15482.1|Name=mRNA_E_fasciculatus_S2_contig729.15482.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=651bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig729:16879..21312- (Ectocarpus fasciculatus EfasUO2)back to top |