mRNA_E_fasciculatus_S2_contig7288.15480.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7288.15480.1
Unique NamemRNA_E_fasciculatus_S2_contig7288.15480.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
BLAST of mRNA_E_fasciculatus_S2_contig7288.15480.1 vs.
Match: USP (domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JJN5_9PHAE)

HSP 1 Score: 553 bits (1424), Expect = 1.670e-185
Identity = 266/282 (94.33%), Postives = 274/282 (97.16%), Query Frame = 1
Query:    1 GSQTPRANGGEGAGSRVGVAGGVDDLARLAEKKIGLPAPGKELYLDSRIKACLRWKQVHRMGPGLRNLGNTCFLNATLQCLSYLPPLAQHLLKGFYGQGPQGVASRGPRPLGGFREFTKVEILAAMEQHTKQVHQGQFTGLGAISPKVLVQNLRMIGKQFRQGRQEDAHEFLRHLLDKMVDCYLKRKGIKSSAPNRLAETTPINRIFGGYLRSRLKCTKCGHCSDTFDPFMDLSMDLSRGVRSIDVALRRFVATERLGSGNEWRCGGCKKPVQAEKSLSVFK 846
            G Q PR N GEGAGSR GVAGGVDDLARLAEKKIGLP PGKELYLDS+IKACL+WKQVHRMGPGLRNLGNTCFLNATLQCLSYLPPLAQHLL GFYG GPQG+ASRGPRP+GGFREFTKVEILAAMEQHTKQVHQGQFTGLGAISPKVLVQNLRMIG+QFRQGRQEDAHEFLRHLLDKMVDCYLKRKG+KSSAP+RLAETTPINRIFGGYLRSRLKCTKCGHCSDTFDPFMDLSMDLSRGVRSI+VALRRFVATERLGSGNEWRCGGCKKPVQAEKSLSVFK
Sbjct:  205 GGQKPRTNAGEGAGSREGVAGGVDDLARLAEKKIGLPPPGKELYLDSKIKACLQWKQVHRMGPGLRNLGNTCFLNATLQCLSYLPPLAQHLLNGFYGHGPQGIASRGPRPMGGFREFTKVEILAAMEQHTKQVHQGQFTGLGAISPKVLVQNLRMIGRQFRQGRQEDAHEFLRHLLDKMVDCYLKRKGVKSSAPSRLAETTPINRIFGGYLRSRLKCTKCGHCSDTFDPFMDLSMDLSRGVRSIEVALRRFVATERLGSGNEWRCGGCKKPVQAEKSLSVFK 486          
BLAST of mRNA_E_fasciculatus_S2_contig7288.15480.1 vs.
Match: Ubiquitin (carboxyl-terminal hydrolase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD98_ECTSI)

HSP 1 Score: 309 bits (792), Expect = 1.690e-96
Identity = 152/270 (56.30%), Postives = 195/270 (72.22%), Query Frame = 1
Query:   67 VDDLARLAEKKIGLPAPGKELYLDSRIKACLRWKQVHRMGPGLRNLGNTCFLNATLQCLSYLPPLAQHLLKGFYGQGPQGVASRGPRPLGGFREFTKVEILAAMEQHTKQVHQGQFTGLG--AISPKVLVQNLRMIGKQFRQGRQEDAHEFLRHLLDKMVDCYLKRKGIKSSAPNRLAETTPINRIFGGYLRSRLKCTKCGHCSDTFDPFMDLSMDL----SRGV----RSIDVALRRFVATERLGSGNEWRCGGCKKPVQAEKSLSVFK 846
            +++LAR AEK I LP   +ELY +S+++  L W+   ++G GL N+GNTC+LN+ LQCLSY+PPLAQHLL G Y QG     S  P    G  +F + +IL AM++   Q+HQ +       AI P+    NLR IG++FR+GRQEDAHEFLRHL+DKM   YL+R+G+   APNRLAETTPI+R+FGGYLRS+LKC++CG CSDTFDPFMDL+M++    S GV    RS+  ALRRF A E LG+GNEW+CGGC K V+AEK+LSVFK
Sbjct:   94 IEELARHAEKDIRLPTKEQELYPESQVRPNLTWRWPCQIGVGLENMGNTCYLNSILQCLSYVPPLAQHLLNGSYSQGSHATCSESPFSFNGSTDFCEDDILGAMQKLVGQIHQTKSGSAEQQAIRPRTFSDNLRKIGEKFRRGRQEDAHEFLRHLVDKMAGSYLERRGVDPFAPNRLAETTPIHRVFGGYLRSQLKCSECGFCSDTFDPFMDLAMNVEKVDSSGVAMNERSLQAALRRFTAPETLGAGNEWKCGGCNKLVEAEKNLSVFK 363          
BLAST of mRNA_E_fasciculatus_S2_contig7288.15480.1 vs.
Match: Ubiquitin (carboxyl-terminal hydrolase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKG0_9PHAE)

HSP 1 Score: 283 bits (723), Expect = 1.290e-85
Identity = 156/331 (47.13%), Postives = 197/331 (59.52%), Query Frame = 1
Query:   67 VDDLARLAEKKIGLPAPGKELYLDSRIKACLRWKQVHRMGPGLRNLGNTCFLNATLQCLSYLPPLAQHLLKGFYGQGPQGVASRGPRPLGGFREFTKVEILAAME--------QHTK--------------------QVHQGQFTGLG--AISPKVLVQNLRMIGKQFRQGRQ---------------------------------EDAHEFLRHLLDKMVDCYLKRKGIKSSAPNRLAETTPINRIFGGYLRSRLKCTKCGHCSDTFDPFMDLSMDL----SRGV----RSIDVALRRFVATERLGSGNEWRCGGCKKPVQAEKSLSVFK 846
            +D+LAR AEK I LP   +ELY +S+++  L W+   ++G GL N+GNTC+LN+ LQCLSY+PPLAQHLL G Y QG Q   S  P PL G  +F + +IL AM+        QH                      Q+HQ +       AI P+    NLR IG++FR+GRQ                                 EDAHE LRHL+DKM   YL+R+G+   A NRL ETTPI+R+FGGYLRS+L+C+KCG CSDTFDPFMDL+M++    SRGV    RS+  ALRRF A E LG+GNEW+CGGC K V+AEK+LSVFK
Sbjct:   94 IDELARRAEKDIRLPTKQQELYPESQVRPNLTWRWPCQIGVGLENMGNTCYLNSILQCLSYVPPLAQHLLNGGYSQGSQATCSESPLPLNGSTDFGEDDILGAMQKLVGQVLLQHQMSARVLYLSALLGISRDLPLFQIHQTKSGSADQQAIRPRTFSDNLRKIGEKFRRGRQVMNLASRTRPISLRCFSFLPDQRTSGDATPYGQEDAHELLRHLVDKMAGSYLERRGVDPFASNRLGETTPIHRVFGGYLRSQLECSKCGFCSDTFDPFMDLAMNVEKVDSRGVAMKERSLQAALRRFTAPETLGAGNEWKCGGCNKLVEAEKNLSVFK 424          
BLAST of mRNA_E_fasciculatus_S2_contig7288.15480.1 vs.
Match: USP (domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLY7_9STRA)

HSP 1 Score: 239 bits (610), Expect = 2.350e-74
Identity = 116/228 (50.88%), Postives = 155/228 (67.98%), Query Frame = 1
Query:  157 LRWKQVHRMGPGLRNLGNTCFLNATLQCLSYLPPLAQHLLKGFYGQGPQGVASRGPRPLGGFREFTKVEILAAMEQHTKQVHQGQFTGLGAISPKVLVQNLRMIGKQFRQGRQEDAHEFLRHLLDKMVDCYLKRKGIKSSAPNRLAETTPINRIFGGYLRSRLKCTKCGHCSDTFDPFMDLSMDLSRGVRSIDVALRRFVATERLGSGNEWRCGGCKKPVQAEKSLSV 840
            L W+++ ++GPGL+NLGNTCFLNATLQCL Y PPL QHLL   YG       +   R      +   V   AA+ + +            AISPK +V N+R IGKQFR GRQEDAHEFLR L+D M +  L+R G+K++AP+RL ETT INR+FGGYLR++++CTKC +CS+T++ +MDLS+D+   + S++ AL+RF A E L S N WRCGGCK+ V A K L++
Sbjct:    1 LEWRELSKVGPGLQNLGNTCFLNATLQCLLYCPPLVQHLLNHKYGAPAAAQQAHHGRA-----QLNLVSNTAAVARSS---------AYSAISPKTIVANIRTIGKQFRPGRQEDAHEFLRKLVDSMAEAILRRHGVKANAPHRLDETTAINRVFGGYLRNQVQCTKCRYCSNTYELYMDLSLDMVGNISSLEDALKRFQAVETLDSSNRWRCGGCKQKVCARKQLTI 214          
BLAST of mRNA_E_fasciculatus_S2_contig7288.15480.1 vs.
Match: Ubiquitin (carboxyl-terminal hydrolase n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8ZBR0_NANGC)

HSP 1 Score: 229 bits (584), Expect = 3.630e-68
Identity = 126/266 (47.37%), Postives = 167/266 (62.78%), Query Frame = 1
Query:  103 GLPAPGKELYLDSRIKACLRWKQVHRMGPGLRNLGNTCFLNATLQCLSYLPPLAQH------------LLKGFYGQGPQGVASRGPRPLGGFREFTKVEILAAMEQHTKQVHQGQFTGLGA---------ISPKVLVQNLRMIGKQFRQGRQEDAHEFLRHLLDKMVDCYLKRKGIKSSAPNRLAETTPINRIFGGYLRSRLKCTKCGHCSDTFDPFMDLSMDLSRGVRSIDVALRRFVATERLGSGNEWRCGGCKKPVQAEKSLS 837
            GLP P K ++ +S+I   + W +V R+GPGL NLGNTCFLNATLQCL+YLPPLAQ+            +L    GQG +G    G +  GG+    + +++A M  HT     G   G G          ISPK +V NL+ + + FR GRQEDAHEFLRHLLD +    L+   +KS+AP RLAETT ++RIFGGYLRS+++CT+CGHCS+T+D F+DLS+++   V  ++ AL RF A E L   N WRC  C + V A+K LS
Sbjct:  108 GLPTPEKGIFPESKIHPLMTWIRVERVGPGLYNLGNTCFLNATLQCLAYLPPLAQYFLSKKEEERVPSVLSPGAGQGHRG----GGQARGGWLGLVR-DLIANM--HTGSGAGGGDRGDGLARREGGRSPISPKAIVGNLKALNRHFRVGRQEDAHEFLRHLLDALQSGCLQAARVKSNAPGRLAETTFVHRIFGGYLRSQVRCTQCGHCSNTYDNFLDLSLEIHGKVGRLEEALARFTAVETLDRANRWRCPACSQLVCAQKRLS 366          
BLAST of mRNA_E_fasciculatus_S2_contig7288.15480.1 vs.
Match: Ubiquitin (carboxyl-terminal hydrolase 36 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TEV7_9STRA)

HSP 1 Score: 229 bits (584), Expect = 4.350e-65
Identity = 126/266 (47.37%), Postives = 167/266 (62.78%), Query Frame = 1
Query:  103 GLPAPGKELYLDSRIKACLRWKQVHRMGPGLRNLGNTCFLNATLQCLSYLPPLAQH------------LLKGFYGQGPQGVASRGPRPLGGFREFTKVEILAAMEQHTKQVHQGQFTGLGA---------ISPKVLVQNLRMIGKQFRQGRQEDAHEFLRHLLDKMVDCYLKRKGIKSSAPNRLAETTPINRIFGGYLRSRLKCTKCGHCSDTFDPFMDLSMDLSRGVRSIDVALRRFVATERLGSGNEWRCGGCKKPVQAEKSLS 837
            GLP P K ++ +S+I   + W +V R+GPGL NLGNTCFLNATLQCL+YLPPLAQ+            +L    GQG +G    G +  GG+    + +++A M  HT     G   G G          ISPK +V NL+ + + FR GRQEDAHEFLRHLLD +    L+   +KS+AP RLAETT ++RIFGGYLRS+++CT+CGHCS+T+D F+DLS+++   V  ++ AL RF A E L   N WRC  C + V A+K LS
Sbjct:  108 GLPTPEKGIFPESKIHPLMTWIRVERVGPGLYNLGNTCFLNATLQCLAYLPPLAQYFLSKKEEERVPSVLSPGAGQGHRG----GGQARGGWLGLVR-DLIANM--HTGSGAGGGDRGDGLARREGGRSPISPKAIVGNLKALNRHFRVGRQEDAHEFLRHLLDALQSGCLQAARVKSNAPGRLAETTFVHRIFGGYLRSQVRCTQCGHCSNTYDNFLDLSLEIHGKVGRLEEALARFTAVETLDRANRWRCPACSQLVCAQKRLS 366          
BLAST of mRNA_E_fasciculatus_S2_contig7288.15480.1 vs.
Match: Ubiquitin (carboxyl-terminal hydrolase n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CS17_9STRA)

HSP 1 Score: 226 bits (577), Expect = 3.280e-64
Identity = 121/262 (46.18%), Postives = 163/262 (62.21%), Query Frame = 1
Query:  103 GLPAPGKELYLDSRIKACLRWKQVHRMGPGLRNLGNTCFLNATLQCLSYLPPLAQHLLKGFYGQGPQGVASRGP--------RPLGGFREFTKVEILAAMEQHTKQVHQGQFT---------GLGAISPKVLVQNLRMIGKQFRQGRQEDAHEFLRHLLDKMVDCYLKRKGIKSSAPNRLAETTPINRIFGGYLRSRLKCTKCGHCSDTFDPFMDLSMDLSRGVRSIDVALRRFVATERLGSGNEWRCGGCKKPVQAEKSLS 837
            GLP P K ++ +S+I   + W +V R+GPGL NLGNTCFLNATLQCL+YLPPLAQ+ L     +    V S G         +  GG+    + +++A M  HT                  G   ISPK +V NL+ + + FR GRQEDAHEFLRHLLD + +  L+   +KS+AP RLAETT ++RIFGGYLRS+++CT+CGHCS+T+D F+DLS+++   V  ++ AL RF A E L   N W+C  C + V A+K LS
Sbjct:  108 GLPTPEKGIFPESKIHPLMTWIRVERVGPGLYNLGNTCFLNATLQCLAYLPPLAQYFLSKKEEESVPSVLSPGAGQGHRGGGQARGGWLGLVR-DLIANM--HTGXXXXXXXXXXXLARREGGRSPISPKAIVGNLKALNRHFRVGRQEDAHEFLRHLLDALQNGCLQAARVKSNAPGRLAETTFVHRIFGGYLRSQVRCTQCGHCSNTYDNFLDLSLEIHGKVGRLEEALARFTAVETLDRANRWKCPACSQLVCAQKRLS 366          
BLAST of mRNA_E_fasciculatus_S2_contig7288.15480.1 vs.
Match: Ubiquitin (carboxyl-terminal hydrolase (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U5Y3_9STRA)

HSP 1 Score: 199 bits (506), Expect = 1.890e-57
Identity = 110/259 (42.47%), Postives = 149/259 (57.53%), Query Frame = 1
Query:   88 AEKKIGLPAPGKELYLDSRIKACLRWKQVHRMGPGLRNLGNTCFLNATLQCLSYLPPLAQHLLKGFYGQGPQGVASRGPRP-----LGGF-REFTKVEILAAMEQHTKQVHQGQFTGLGAISPKVLVQNLRMIGKQFRQGRQEDAHEFLRHLLDKMVDCYLKRKGIKSSAPNRLAETTPINRIFGGYLRSRLKCTKCGHCSDTFDPFMDLSMDLSRGVRSIDVALRRFVATERLGSGNEWRCGGCKKPVQAEKSLSVFK 846
            A+  +G+P   + L   S     LRW++V   GPGL NLGNTCFLN+T+QCL+ LPPL Q+L         + V   G R      +GGF R+F                     T   A +PK +V NLR I + F+ GRQEDAHE+LR LLD +    L R G+K +A  R  ET+ ++R+FGGYLRS+LKC  C +CS+T+D  +DLS+++   V S+  AL  F A E L   N W+CGGC K V+A K ++VF+
Sbjct:   27 ADNPLGVPPAAEHLAPASLAGRYLRWERVRGPGPGLSNLGNTCFLNSTMQCLAALPPLVQYL---------ESVGEDGGRNDLLGLIGGFMRKFGG-------------------TRSNAFAPKAIVGNLRRISRNFKLGRQEDAHEYLRQLLDGLHKSCLMRSGLKPTACGRREETSAMHRLFGGYLRSQLKCNDCAYCSNTYDACLDLSLEIHGKVSSLPSALEAFQAAEILDKDNRWKCGGCNKLVRARKQITVFR 257          
BLAST of mRNA_E_fasciculatus_S2_contig7288.15480.1 vs.
Match: Hypothetical (protein (Fragment) n=2 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YFU1_9STRA)

HSP 1 Score: 194 bits (492), Expect = 4.180e-57
Identity = 106/247 (42.91%), Postives = 145/247 (58.70%), Query Frame = 1
Query:  106 LPAPGKELYLDSRIKACLRWKQVHRMGPGLRNLGNTCFLNATLQCLSYLPPLAQHLLKGFYGQGPQGVASRGPRPLGGFREFTKVEILAAMEQHTKQVHQGQFTGLGAISPKVLVQNLRMIGKQFRQGRQEDAHEFLRHLLDKMVDCYLKRKGIKSSAPNRLAETTPINRIFGGYLRSRLKCTKCGHCSDTFDPFMDLSMDLSRGVRSIDVALRRFVATERLGSGNEWRCGGCKKPVQAEKSLSVFK 846
            LP   ++L     I+  LRW++    GPGL NLGNTCF NATLQ L+ L P  Q+L           ++ RG             ++LA +    ++   G+     A +PK ++ NLR I K FRQGRQEDAHEFLRHLLD +    L R+G+K +   R  ET+ I RIFGGYLRS+LKC+ C  C  T+D F+DLS++++  + S+  AL+ F A E L   N W+CGGC K V+A K +++FK
Sbjct:   25 LPPLEEQLTPPDLIQQLLRWRKPRGSGPGLVNLGNTCFANATLQSLASLAPFVQYL---------DDLSPRGD------------DLLAVVNGFFQRF--GRVAPGSAFAPKQVIGNLRRIAKSFRQGRQEDAHEFLRHLLDGLHRACLVREGLKPTDCGRREETSAIYRIFGGYLRSQLKCSNCAFCLHTYDAFLDLSLEITGKISSLPSALQMFQAAEVLDKHNRWKCGGCGKHVRARKQITIFK 248          
BLAST of mRNA_E_fasciculatus_S2_contig7288.15480.1 vs.
Match: Ubiquitin (carboxyl-terminal hydrolase n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GFT3_PHYRM)

HSP 1 Score: 195 bits (495), Expect = 1.010e-53
Identity = 110/267 (41.20%), Postives = 152/267 (56.93%), Query Frame = 1
Query:   49 VGVAGGVDDLARLAEKKIGLPAPGKELYLDSRIKACLRWKQVHRMGPGLRNLGNTCFLNATLQCLSYLPPLAQHLL-KGFYGQGPQGVASRGPRPLGGFREFTKVEILA--AMEQHTKQVHQGQFTGLGAISPKVLVQNLRMIGKQFRQGRQEDAHEFLRHLLDKMVDCYLKRKGIKSSAPNRLAETTPINRIFGGYLRSRLKCTKCGHCSDTFDPFMDLSMDLSRGVRSIDVALRRFVATERLGSGNEWRCGGCKKPVQAEKSLSV 840
            V V G +D+ A   +KK       KEL     ++  L W++  ++GPG  NLGNTC+LN+ LQCL+Y P  AQ LL K  +     G ++       GF         A  AM +  +  H      +  + PK LV N+R I K FR GRQED+HEF R LLD M    L++  IK+   +  A TT ++R+FGG L++ LKC KCGH S+ FD F+DLS++++ GV S+  ALR F ATE+L   N W+C  C KP +AEK L++
Sbjct:   48 VRVIGRLDEKAEKPKKK-----EAKELTAAESVERVLTWQRSKKIGPGFANLGNTCYLNSVLQCLTYTPCFAQFLLDKEVFASFNGGNSNAKLNKTNGFSGSNTGGFCAVRAMSRLLQSAHGNN--SVRVVQPKELVMNVRHISKSFRIGRQEDSHEFFRLLLDSMQRSCLRKARIKNET-HSAASTTFVHRMFGGKLKNSLKCAKCGHVSERFDDFLDLSLEIAHGVTSVKGALRHFTATEKLDDRNAWKCSSCGKPSRAEKGLTI 306          
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7288.15480.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
USP1.670e-18594.33domain-containing protein n=2 Tax=Ectocarpus TaxID... [more]
Ubiquitin1.690e-9656.30carboxyl-terminal hydrolase n=1 Tax=Ectocarpus sil... [more]
Ubiquitin1.290e-8547.13carboxyl-terminal hydrolase n=1 Tax=Ectocarpus sp.... [more]
USP2.350e-7450.88domain-containing protein (Fragment) n=1 Tax=Tribo... [more]
Ubiquitin3.630e-6847.37carboxyl-terminal hydrolase n=1 Tax=Nannochloropsi... [more]
Ubiquitin4.350e-6547.37carboxyl-terminal hydrolase 36 n=1 Tax=Nannochloro... [more]
Ubiquitin3.280e-6446.18carboxyl-terminal hydrolase n=1 Tax=Nannochloropsi... [more]
Ubiquitin1.890e-5742.47carboxyl-terminal hydrolase (Fragment) n=1 Tax=Pha... [more]
Hypothetical4.180e-5742.91protein (Fragment) n=2 Tax=Pinguiococcus pyrenoido... [more]
Ubiquitin1.010e-5341.20carboxyl-terminal hydrolase n=1 Tax=Phytophthora r... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7288contigE_fasciculatus_S2_contig7288:2084..7047 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score560.5
Seed ortholog evalue4.6e-157
Seed eggNOG ortholog2880.D8LD97
Model size846
KEGG koko:K11855
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0016787,GO:0031974,GO:0031981,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0070013,GO:0101005,GO:0140096
Exons6
EggNOG free text desc.ubiquitinyl hydrolase activity
EggNOG OGsKOG1865@1,KOG1865@2759
EC3.4.19.12
Cds size846
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002,ko04121
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7288.15480.1prot_E_fasciculatus_S2_contig7288.15480.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7288 2084..7047 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842393.0152018-CDS-E_fasciculatus_S2_contig7288:2083..22061696842393.0152018-CDS-E_fasciculatus_S2_contig7288:2083..2206Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7288 2084..2206 +
1696842393.037008-CDS-E_fasciculatus_S2_contig7288:3617..37881696842393.037008-CDS-E_fasciculatus_S2_contig7288:3617..3788Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7288 3618..3788 +
1696842393.0567749-CDS-E_fasciculatus_S2_contig7288:4475..45771696842393.0567749-CDS-E_fasciculatus_S2_contig7288:4475..4577Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7288 4476..4577 +
1696842393.0693157-CDS-E_fasciculatus_S2_contig7288:5281..53801696842393.0693157-CDS-E_fasciculatus_S2_contig7288:5281..5380Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7288 5282..5380 +
1696842393.0830724-CDS-E_fasciculatus_S2_contig7288:6102..62491696842393.0830724-CDS-E_fasciculatus_S2_contig7288:6102..6249Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7288 6103..6249 +
1696842393.1058662-CDS-E_fasciculatus_S2_contig7288:6843..70471696842393.1058662-CDS-E_fasciculatus_S2_contig7288:6843..7047Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7288 6844..7047 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7288.15480.1

>prot_E_fasciculatus_S2_contig7288.15480.1 ID=prot_E_fasciculatus_S2_contig7288.15480.1|Name=mRNA_E_fasciculatus_S2_contig7288.15480.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=282bp
GSQTPRANGGEGAGSRVGVAGGVDDLARLAEKKIGLPAPGKELYLDSRIK
ACLRWKQVHRMGPGLRNLGNTCFLNATLQCLSYLPPLAQHLLKGFYGQGP
QGVASRGPRPLGGFREFTKVEILAAMEQHTKQVHQGQFTGLGAISPKVLV
QNLRMIGKQFRQGRQEDAHEFLRHLLDKMVDCYLKRKGIKSSAPNRLAET
TPINRIFGGYLRSRLKCTKCGHCSDTFDPFMDLSMDLSRGVRSIDVALRR
FVATERLGSGNEWRCGGCKKPVQAEKSLSVFK
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mRNA from alignment at E_fasciculatus_S2_contig7288:2084..7047+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7288.15480.1 ID=mRNA_E_fasciculatus_S2_contig7288.15480.1|Name=mRNA_E_fasciculatus_S2_contig7288.15480.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=4964bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7288:2084..7047+ (Ectocarpus fasciculatus EfasUO2)
GGCAGCCAAACGCCGAGGGCAAACGGCGGCGAGGGCGCAGGGAGTAGGGT GGGAGTGGCGGGAGGTGTGGACGACCTTGCCAGGCTGGCGGAGAAGAAGA TAGGGCTGCCGGCCCCGGGCAAGGTATGTACGTATGTACGATCGAGGCCG GCTGGTGCAACATACATGGAAAGTCAAAGTTGCCTTTGTTGTTCGTGCAA TTCAAAAGTCTGTACAGTAGGGTCGTCGTCTACTAGTCGAAGTATAGGTC GTTTTGAAATATAATTGGTCGTCCTGTGGCGGCACCAACGTTCGTTGCCG TCGAATCCAGCGGTTGGTGGTCTCTCCATCGCCCCGCACCTTTGTGCACG AACGTTCAGGAGGGTGTGCAAGATAATAACGTGTTGCACCTTTTTTAAGT AAGGAGGTCAGAGAGGCGTTTTGAGTGAAATAGACAAGACACCGTGAACT CCAACGAACCCGTCGTGGACGAAAAAGGGGTACGTACGTGTGCGCTGTAA ATCTCGATCGTCCTTCATATGCATATGCATATGCATGTGCACCTGGTTCA GCGACATAAGCACGCATTTTGAAGTATTGTTACCCCCTTGCCTACCCATG GTCACTCTGGAGGCGGTCTGTTGGTAAGATCGTGTTTCCAACCCGCTTGT GGAATGCCCCCGCCTCCTATGCATCACACGGAGAAAGATATAGCGCTGTG GTGAATATCTCGAACGGGTAGGTTTTATAATTCTTGTGTTGTATAAAACG AGGAGACAATGAGTAATTTCTTGGGAGTTGGGGGCGGTGTAACCTGCTGT GTTTGCCTTGGTGCATGGGACCCCCACTACCAACGGGATTTCGTGAGAGA GACTGCTGTGCAGCGGCGATTGTCGCGATGAACAATACCAATTCTAGGAA TACTTGTAGGGGATGGGGGTTTGGACCGGAGCTGCGCGTACGTGCTCGTG GTGTTGGTCTTGCTTTGTCGCGCTCTTCCAGCTGATCCCGAAAATTCGGC AACAGAGCAAACGGAGACAGAGTGTGTGAGAGTCGTTGCTCGCTTTTCGT TTACTTCCGAAGTGTGTTTGCCGCATCACCGAGCTTGAACGAGACCAGGA ATATCTTCAACCAGCATGCTTGAGAGCTAATTGAGAGGATACACACACGA GACAAGACTTTGTGGAACTGGCAACAAGGACGAACAAGTTGCCCGAAGTG GATTTATTACTGGCTTGTTTTTGGCTTGTTTTACCAATGAAGTACATTCG GTAAAAGTCATCTCAACGTGTCCGTGCGCCCCCCCCCCCCCCCCCCCCCC CCCCACCCCCCCCCCCCCCCCCCTCCCCCCCCTCCTCCCTCCTATCCCAA CCAAACCAACCACNNNNNNNNNNAGAATGTGATTTTTTTTTTGTTGTTTT TTTTTTTTTTTTTCAAACGAAGAAAATTCTGTAAAAAAACATCCCACTCC TGCGGCCCCCCCCCCCCCCCCCCCCCCCGTGTGTACCTCCTCTGCCGCGT GCCCCTTCCTCTTTCATTGAACAATGCCACGAAGGAGCTCTACCTCGACT CTCGAATCAAGGCATGTCTACGGTGGAAGCAGGTCCACAGGATGGGACCG GGGCTCCGCAATCTCGGCAACACCTGCTTCCTGAACGCCACGCTGCAGTG CCTGAGCTACCTTCCCCCGCTGGCCCAGCACCTCCTCAAGGGGTTCTACG GTCAGGTGCGATTAACGCTTCATTTTGTCGAACTCCTTTGAGGTGATTGC TGAAGGGCTTGGAGCCGTCTTTTCTGGGGCGGCTACTTTGCCATGCCTCT AAACGGGGGCGATTGGCATCCACCCCTGCCTGCAACACCTTCCGGTTCTA GACAAATGTTTTTTGTCGTGTGCATGTATTTTTGTCGCATAGGTTTCTGA GGTTTTGCTCTTCTTCCTCGGGTTGCCGATATGGGGAGACACATAGTGGT CTTGCTCAAGAAAAGCAACAGAGAAAACGGTCTAAAATTTTACATCAGCC CTCCGAAATATTCTTGACGACGTATCACGCATGTCACGCAGTACTCTGCG GTGCAATTCTCTACGATGGCCGTGTCTACTTCCGAGATTGAAATACACGT ATCACGTGGTACTCAGCAGTTTATTTTTCCAGGGCCCCGGTAGCGACCCC TTTTTTTATAACACTACATTTGGCTTGCGGACCCTTCGGGTCAATTTTTA TTTTAGTGCACCTTTTTTTGGTAAGTTGGCCTGTGACCACGGGAATCGAC CGCGTCAAGTGTTAGACTAGTACGGACAGATGAAGGTGCTGAGTAGAGAG ATCGAAACAGTTTTTAATGTGAAGAAGACAACAACAACAACAACAACAAC AACTGCATCGTCATCACGGATCACGGTCACATACCTGGGCAGGGCCCCCA GGGGGTAGCTTCAAGGGGTCCCCGTCCATTGGGAGGCTTCCGGGAGTTCA CCAAGGTGGAGATACTGGCGGCGATGGAGCAGCACACGAAGCAGGTGTGG TTGGGGGATGGGAGATGGGGCCTGACCCTTTTGGGTGTTTGTTTGTTGTT GATGTTGTTTTGGGTGTTCAAGGCGTTGTTGTTGGTGATTACGGTTCGCG GTGCCCCTTCGGCCCGGGGGGGGAAACGGTGTTTTTTTCTCGCACCTATT TCCAACGAAGACGGCCACCTCGCGGCCTGGTAGAGTCATACACGTGCTTT CAATCGCGCCGAGATTGGCGTCTTCCCATTGGTGAGCCGGTTAGCGTGGT CAACGCTAAGAATGAAAACACACACACACATGGCACTATCGGTAGGACCC TATGCCGAGACTCGTGCTGTGTATGAATCGGCTTGTTGTTTTCATTGGTC CGCCGGTTTACTCTGTAGCACGGTCGATGTTAAGCAAAGGAAGCACGCAA GACACGCACGAAACCGCTTCACAAAGTCCCAGGAAGGGTTGCCCGCTGCT GGCCGCACTGAGGCTGGCGTATTCTGCATTTGTCAGGCGGTTAGCGCGGT CGACGCTGATAAAAATGACACGCGCACATACACGCGTATTCACGAAGGCG GAGGAAAAGAGAAGGGGTGATAATGGTACATGCTACGGTATGCACCCTCT TTTGATTTACTCTGACTCTGTCGTGTGCTGTCGCCGTCTTTGATGTTGCT ATTCACTCCGCACGGCATGCGAAATGGAACTCGGAACAATTATTTCAGGT GCACCAGGGGCAGTTCACGGGGCTAGGGGCGATTAGCCCGAAGGTTTTGG TTCAGAACCTCCGTATGATCGGGAAGCAGTTTCGACAGGGAAGACAGGTG TGAGGAGGGAAGAAACGAAAGGTTATTCAAGGAGAACCAAAATCGCGCGT GGTTCAGTAGACTTTGGCTGTTGTGTTCTTGTGTTCTTGTGGCCGTTGTT GTCATGGTCGTCTTGATTGGGTGAATTTTTTTTTTTTTTATCACACCCTA TGTGACCTCCATCGACTACAATACCTCCACGGCGTGTGTCTTCGTTTCGT CTTTCATGGTGGCGATGTGCTCTGGCTTGATTTGGAACTAATTCTTGCGG TTGGGTCTGTGCGAAAATTATGAAGGAAACGTGAAAAACATCCCCAGGAG ACCTGCCACTGCCGTATGTTTGGCAAGACACCTTGCACGAAACATGAGAC ATGGGACTGGATGAATTGAAATTGTCCACGCGAGCGAATGGTTTGGGCGC TGTTTGCGCTGTGCTCCTGCCCCTCTCCAAAGCGCACTGTTGCCCGATGG ACCCTATCTAGCGTATGCGTGTCCGCCTCTATTGAAACAACAAACCCCGA CAATGTTAACGCCAGCTGGTATCACTGATATAGTTTAGTGTATAGGCTGA AACAGACTCAACACAAGGCCCAGTTACCAGCCGGCTTCCCTCCACTCACT GCAAAGACTTCAGCACATCGCTTTCGACTGTGGTAATGTGCTTAAATGCA TATTTTCTAGCAACCCCCGATATCGTTAACCTTCACGGCTAACTCGGACG GCAACGCAACGACGAACAGGAGGACGCCCACGAGTTCTTACGGCACCTCC TGGACAAGATGGTGGACTGCTACCTCAAGCGCAAGGGGATCAAGTCGTCC GCGCCCAACAGGCTGGCGGAGACGACGCCGATCAACCGCATCTTCGGGGG ATACCTCCGCAGCCGGGTGCGTACCGCGAGGCTGGATGCGTAATACGGTA GATACCACACCCTTTGCCGGACCGATTTTCGTTTCGAAGCCCCCGTTGTT CAGTCTGCGCCCCCCCCAAGAGAGAGGCGACGGATGCCCCAAAGAATGGG CGGCGTTTGAGCACCACTATTAATAGCTGTCGTCGAGAGCGGTTTCTGGA AGGGCATTACCCTACCCTACCCTTTGATTTGGGCACCCTCTTTGTCGTGG AGTGTTGAAGCTATGAAGGTCGTTCGGTCCAGGGGGGGAGGGGTGTACTC ACAATTCGTGCATGCCGTAGTCGTTAGACCATTGACCTCGTGGTCCAGGC GGTTGGTCCAGGGGCAGTGGTATTGTTTTTTTACACCTATGGTACGCAGT AGTCCTCCTCCTAAGCATGATGTTATGGTATTTCGACCTTGACTTGGAAG GGTTGGGTTGCTGCGTGGATGACAACGCACCCGAAAGCAAGTAGTTCCTT TTTTTTTTTCGCCCAGGTTAGATGGGGATGAACAAATGAGAATCACAAAA TACATTCTTGCATGCGTGAGAATGACGTTTTTACCCATATAATTTTTTTG TTTTCGTCAGCTCAAGTGCACCAAGTGCGGACACTGCAGCGACACGTTCG ACCCCTTCATGGACCTGTCCATGGACCTCTCGAGGGGGGTGCGATCGATA GACGTTGCTTTGAGGCGCTTCGTCGCGACAGAGAGGCTGGGCTCTGGTAA CGAATGGCGGTGCGGCGGGTGCAAGAAGCCGGTTCAGGCGGAGAAGAGCC TTTCGGTATTCAAG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7288:2084..7047+

>mRNA_E_fasciculatus_S2_contig7288.15480.1 ID=mRNA_E_fasciculatus_S2_contig7288.15480.1|Name=mRNA_E_fasciculatus_S2_contig7288.15480.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=846bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7288:2084..7047+ (Ectocarpus fasciculatus EfasUO2)
GGCAGCCAAACGCCGAGGGCAAACGGCGGCGAGGGCGCAGGGAGTAGGGT
GGGAGTGGCGGGAGGTGTGGACGACCTTGCCAGGCTGGCGGAGAAGAAGA
TAGGGCTGCCGGCCCCGGGCAAGGAGCTCTACCTCGACTCTCGAATCAAG
GCATGTCTACGGTGGAAGCAGGTCCACAGGATGGGACCGGGGCTCCGCAA
TCTCGGCAACACCTGCTTCCTGAACGCCACGCTGCAGTGCCTGAGCTACC
TTCCCCCGCTGGCCCAGCACCTCCTCAAGGGGTTCTACGGTCAGGGCCCC
CAGGGGGTAGCTTCAAGGGGTCCCCGTCCATTGGGAGGCTTCCGGGAGTT
CACCAAGGTGGAGATACTGGCGGCGATGGAGCAGCACACGAAGCAGGTGC
ACCAGGGGCAGTTCACGGGGCTAGGGGCGATTAGCCCGAAGGTTTTGGTT
CAGAACCTCCGTATGATCGGGAAGCAGTTTCGACAGGGAAGACAGGAGGA
CGCCCACGAGTTCTTACGGCACCTCCTGGACAAGATGGTGGACTGCTACC
TCAAGCGCAAGGGGATCAAGTCGTCCGCGCCCAACAGGCTGGCGGAGACG
ACGCCGATCAACCGCATCTTCGGGGGATACCTCCGCAGCCGGCTCAAGTG
CACCAAGTGCGGACACTGCAGCGACACGTTCGACCCCTTCATGGACCTGT
CCATGGACCTCTCGAGGGGGGTGCGATCGATAGACGTTGCTTTGAGGCGC
TTCGTCGCGACAGAGAGGCTGGGCTCTGGTAACGAATGGCGGTGCGGCGG
GTGCAAGAAGCCGGTTCAGGCGGAGAAGAGCCTTTCGGTATTCAAG
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