mRNA_E_fasciculatus_S2_contig7284.15478.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7284.15478.1
Unique NamemRNA_E_fasciculatus_S2_contig7284.15478.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7284.15478.1 vs.
Match: RNA (helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD59_ECTSI)

HSP 1 Score: 752 bits (1942), Expect = 7.170e-264
Identity = 502/680 (73.82%), Postives = 526/680 (77.35%), Query Frame = 1 
Query:    1 MLAARRTYGLGRSTLRRG-VAVSRCSRLGALADASTTRCRSTGNGSTLQQVPAARRQHFSGGSTPGANS---SAEVGLGAPGGEGGGGWSAARLARR----EWVRYQNMMHQRAGLARRDQLSSLRGGVVGPSVGNGGGTGGVEASAXXXXXXXXXXXXXXXX---SMPTPTGT-VTLPPSATMATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLRTTTKGTARGGPGGPDDGDSKASDAVPPIAPSHQETSSRSRSEGAVITDLDSRREAALNAELERKFGTEPPQREEISGKPRRRRSRGXXXRRGAARAVEGTANELQDGSPTEVSGAAG------SETGEPNEVPVGEAAGSITAMSGDRAKPESGEGTPRSKSADESRRGRRSRRGGSATGDGKGGESVGRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSLNIRSAWKNIHAKKKLRWLLRGLASDYWVQEMLARHHVSKDTMSKLLPAFEGLVLDDPDTAFPGEAGQKLQEEVSSLCYHPKFQADAVLMKRPIRTRTTSGRSFTFSSKQLKRGREGPFVKERNDVVEKGFIPRLVELAQESYADEIEATKRMDSIVDLRNPQHGFPLARLRKRRIIYHGGPTNSGKTYQAIERLKKAGANRQPGDGPAGLFCGPLRLLALEVYEQV 1986
            MLAARRTYGLGRSTL    VAVSRCSRLGALA A+T RCRST  GST +QVPAAR+QHFSGGS PGANS   S  VGLG    + G G    +LAR+    EWVRYQNMMHQR GLARRDQLSS+RGGVVGPSV N  G+GGVE SA  XXXXXXXXXXXX     + PT  G+ VTL P ATMAT                                            T+++ TA  G G PDDGD  A D VPPIA + QETSSR  SE AVITDLDSRREAALNAELERKFGTEPPQ EEISGK RRRRSRG   RRGAARAVEGTANELQ   P+ VSG  G      SETGE NEVPVGEAAG IT MSGD AKP SGEGTPRSKSADESRRGRR+RRGG ATGDG+GG S+       XXXXXXXXXXXXXXXXXXXXXX     S    SAWKN+HAKKKLRWLL+GLASDY VQEMLARHH+SK TMSKLL  FE LVLD PDTAFPGEAGQKLQEE+SSLCYHPKFQADAVLMKRPIRTRTTSGRSFTFSSKQ KRGREGPFVKERNDVVEKG IPRLVELAQESYADEIEATKRMDSIVDLRNPQ GFPLARLRKRRIIYHGGPTNSGKTYQAIERLKKAGA+RQPGDGPAGLFCGPLRLLALEVYEQ+
Sbjct:    1 MLAARRTYGLGRSTLSTSAVAVSRCSRLGALAHATTARCRSTRIGST-RQVPAARQQHFSGGSAPGANSLSSSPGVGLGR---QAGCGRRPTQLARKKGKTEWVRYQNMMHQRTGLARRDQLSSMRGGVVGPSVNNDAGSGGVETSADSXXXXXXXXXXXXSEPDVATPTAAGSSVTLSPPATMAT--------------------------------------------TSSESTAVIGLG-PDDGDLAAPDTVPPIATTRQETSSRISSEDAVITDLDSRREAALNAELERKFGTEPPQLEEISGKTRRRRSRGRG-RRGAARAVEGTANELQHEPPSAVSGGGGIAPAAESETGELNEVPVGEAAGPITGMSGDGAKPASGEGTPRSKSADESRRGRRNRRGGDATGDGRGGGSL-------XXXXXXXXXXXXXXXXXXXXXXSEDSYSQQQGSAWKNVHAKKKLRWLLKGLASDYGVQEMLARHHISKHTMSKLLRVFEDLVLDHPDTAFPGEAGQKLQEEMSSLCYHPKFQADAVLMKRPIRTRTTSGRSFTFSSKQPKRGREGPFVKERNDVVEKGLIPRLVELAQESYADEIEATKRMDSIVDLRNPQQGFPLARLRKRRIIYHGGPTNSGKTYQAIERLKKAGADRQPGDGPAGLFCGPLRLLALEVYEQL 623
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7284.15478.1 vs.
Match: RNA (helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K988_9PHAE)

HSP 1 Score: 559 bits (1441), Expect = 9.580e-189
Identity = 349/432 (80.79%), Postives = 355/432 (82.18%), Query Frame = 1 
Query:  751 QETSSRSRSEGAVITDLDSRREAALNAELERKFGTEPPQREEISGKPRRRRSRGXXXRRGAARAVEGTANELQDGSPTEVSGAAG------SETGEPNEVPVGEAAGSITAMSGDRAKPESGEGTPRSKSADESRRGRRSRRGGSATGDGKGGESVGRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSLNIRSAWKNIHAKKKLRWLLRGLASDYWVQEMLARHHVSK--------------DTMSKLLPAFEGLVLDDPDTAFPGEAGQKLQEEVSSLCYHPKFQADAVLMKRPIRTRTTSGRSFTFSSKQLKRGREGPFVKERNDVVEKGFIPRLVELAQESYADEIEATKRMDSIVDLRNPQHGFPLARLRKRRIIYHGGPTNSGKTYQAIERLKKAGANRQPGDGPAGLFCGPLRLLALEVYEQV 1986
            QETSS   SE AVITDLDSRREAALNAELERKFGTEPPQREEISGKPRRRRSRG   RRGAARAVEGTANELQ   P    G  G      SETGE NEVPV  A G  T MSGD AKP SGEGTPRS+SA+E RRGRR+RRGG ATGD        R XXXXXXXXXXXXXXXXXXXXXXXXX      S    SAWKNIHAKKKLRWLL+GLASDY VQEMLA HHVSK               TMSKLL  FE LVLD PDTAFPGE GQKLQEEVSSLCYHPKFQADAVLMKRPIRTRTTSGRSFTFSSKQ KRGREGPFVKERNDVVEKG IPRLVELAQESYADEIEATKRMD+IVDLRNPQ GFPLARLRKRRIIYHGGPTNSGKTYQAIERLKKAGANRQPGDGPAGLFCGPLRLLALEVYEQ+
Sbjct:  129 QETSSCISSEDAVITDLDSRREAALNAELERKFGTEPPQREEISGKPRRRRSRGRD-RRGAARAVEGTANELQHEPPAAARGGGGIAPAAESETGELNEVPVSAAVGPTTGMSGDGAKPASGEGTPRSRSAEELRRGRRNRRGGHATGD--------RXXXXXXXXXXXXXXXXXXXXXXXXXXGSGDSFSQQQGSAWKNIHAKKKLRWLLKGLASDYGVQEMLALHHVSKASFSTRISCRQVSVQTMSKLLRVFEDLVLDHPDTAFPGEEGQKLQEEVSSLCYHPKFQADAVLMKRPIRTRTTSGRSFTFSSKQPKRGREGPFVKERNDVVEKGLIPRLVELAQESYADEIEATKRMDNIVDLRNPQQGFPLARLRKRRIIYHGGPTNSGKTYQAIERLKKAGANRQPGDGPAGLFCGPLRLLALEVYEQL 551
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7284.15478.1 vs.
Match: Uncharacterized (protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CEJ7_PYTOL)

HSP 1 Score: 100 bits (248), Expect = 3.810e-18
Identity = 60/109 (55.05%), Postives = 73/109 (66.97%), Query Frame = 1 
Query: 1666 KERNDVVEKGFIPRLVELAQ-ESY-ADEIEATKRMDSIVDLRNPQHGFPLARLRKRRIIYHGGPTNSGKTYQAIERLKKAGANRQPGDGPAGLFCGPLRLLALEVYEQV 1986
            K+RN  V   F P  VE AQ ++Y A   E +  +  I DLR P   +PLA   KRRIIYH GPTNSGKTY+A+ERLK+AG      DG  GL+CGPLRLLALE+YE++
Sbjct:  164 KKRNAFV---FYPHFVEFAQTKNYMARSGEGSFTLAQITDLRLPHELYPLANAMKRRIIYHEGPTNSGKTYEALERLKQAGE-----DG--GLYCGPLRLLALEIYERM 262
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7284.15478.1 vs.
Match: Hypothetical (protein (Fragment) n=2 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HC17_9STRA)

HSP 1 Score: 92.4 bits (228), Expect = 4.410e-18
Identity = 51/99 (51.52%), Postives = 64/99 (64.65%), Query Frame = 1 
Query: 1675 NDVVEKGFIPRLVELAQESYADEIEATKRMDSIVDLRNPQHGFPLARLRKRRIIYHGGPTNSGKTYQAIERLKKAGANRQPGDGPAGLFCGPLRLLALE 1971
            N VVE   +PR    A+    + IE+ + + +  DLR P   +P  RL KR+IIYHGGPTNSGKTYQA++RL +A     P  G  GL+CGPLRLLALE
Sbjct:   81 NYVVESVLLPR----AEVELKEVIESYRLLSTATDLRVPHEWYPKTRLMKRKIIYHGGPTNSGKTYQALKRLAEA----DPAKG-GGLYCGPLRLLALE 170
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7284.15478.1 vs.
Match: RNA (helicase n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BGH6_PYTIN)

HSP 1 Score: 99.8 bits (247), Expect = 6.200e-18
Identity = 59/113 (52.21%), Postives = 72/113 (63.72%), Query Frame = 1 
Query: 1666 KERNDVVEKG----FIPRLVELAQES-YADEI-EATKRMDSIVDLRNPQHGFPLARLRKRRIIYHGGPTNSGKTYQAIERLKKAGANRQPGDGPAGLFCGPLRLLALEVYEQV 1986
            KER  ++EK     F P  +E A+E  Y     E +  +  I DLR P   +PLA   +RRIIYH GPTNSGKTYQA+ERLK AG      DG  GL+CGPLRLLALE+YE++
Sbjct:  351 KERQQMLEKKNTFVFYPHFLEFAREKDYIPRTGEGSFTLQQITDLRLPHQLYPLANAMQRRIIYHQGPTNSGKTYQALERLKNAGE-----DG--GLYCGPLRLLALEIYERL 456
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7284.15478.1 vs.
Match: RNA (helicase (Fragment) n=1 Tax=Euryarchaeota archaeon TaxID=2026739 RepID=A0A482R8U6_9EURY)

HSP 1 Score: 96.3 bits (238), Expect = 1.920e-17
Identity = 46/96 (47.92%), Postives = 62/96 (64.58%), Query Frame = 1 
Query: 1699 IPRLVELAQESYADEIEATKRMDSIVDLRNPQHGFPLARLRKRRIIYHGGPTNSGKTYQAIERLKKAGANRQPGDGPAGLFCGPLRLLALEVYEQV 1986
            +P +  +A+E++ +++ A + M    DLR P   +P AR  KRRII+H GPTNSGKTY A+  LK         D  +GL+CGPLRLLALEVYE +
Sbjct:  219 LPLVASVAEETFGEQLAAARVMRQCADLRQPHTWYPRARRLKRRIIFHAGPTNSGKTYHALRALK---------DAHSGLYCGPLRLLALEVYESM 305
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7284.15478.1 vs.
Match: RNA (helicase n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6VC43_9CHLO)

HSP 1 Score: 98.2 bits (243), Expect = 1.920e-17
Identity = 47/99 (47.47%), Postives = 63/99 (63.64%), Query Frame = 1 
Query: 1684 VEKGFIPRLVELAQESYADEIEATKRMDSIVDLRNPQHGFPLARLRKRRIIYHGGPTNSGKTYQAIERLKKAGANRQPGDGPAGLFCGPLRLLALEVYE 1980
            V++   P   +   E Y  EI+A + M   VDLRNP   FP+AR  +RRIIYH GPTNSGKTY A++ ++ A          +G++CGPLRLLA+EVY+
Sbjct:  180 VQEALFPLFAQFVLERYTAEIKAYRDMVQTVDLRNPHQWFPMARALQRRIIYHAGPTNSGKTYNALQAMRAA---------KSGVYCGPLRLLAMEVYD 269
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7284.15478.1 vs.
Match: RNA (helicase n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1Z5S3_CHLVA)

HSP 1 Score: 95.5 bits (236), Expect = 9.530e-17
Identity = 45/98 (45.92%), Postives = 62/98 (63.27%), Query Frame = 1 
Query: 1687 EKGFIPRLVELAQESYADEIEATKRMDSIVDLRNPQHGFPLARLRKRRIIYHGGPTNSGKTYQAIERLKKAGANRQPGDGPAGLFCGPLRLLALEVYE 1980
            ++   P   +   E Y  +I+A + M   VDLRNP   FP+AR  +RRIIYH GPTNSGKTY A++ ++ A          +G++CGPLRLLA+EVY+
Sbjct:  174 QQALFPYFAQFVLERYMADIKAYRDMIQTVDLRNPHQWFPVARALQRRIIYHAGPTNSGKTYNALQAMRSA---------QSGIYCGPLRLLAMEVYD 262
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7284.15478.1 vs.
Match: Helicase (ATP-binding domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SRD4_9ARCH)

HSP 1 Score: 91.3 bits (225), Expect = 1.050e-16
Identity = 47/79 (59.49%), Postives = 52/79 (65.82%), Query Frame = 1 
Query: 1744 IEATKRMDSIVDLRNPQHGFPLARLRKRRIIYHGGPTNSGKTYQAIERLKKAGANRQPGDGPAGLFCGPLRLLALEVYE 1980
            I   K +    DL  P   FP ARL KR+IIYHGGPTNSGKTY AI+RLK A        G  GL+CGPLRLLALE+YE
Sbjct:  140 IVTNKTVCGASDLTMPHQWFPHARLMKRKIIYHGGPTNSGKTYHAIQRLKAADPT-----GGGGLYCGPLRLLALEIYE 213
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7284.15478.1 vs.
Match: RNA (helicase (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YC56_AURAN)

HSP 1 Score: 94.0 bits (232), Expect = 1.460e-16
Identity = 45/73 (61.64%), Postives = 55/73 (75.34%), Query Frame = 1 
Query: 1768 SIVDLRNPQHGFPLARLRKRRIIYHGGPTNSGKTYQAIERLKKAGANRQPGDGPAGLFCGPLRLLALEVYEQV 1986
            S  DLR P+  +P ARL +RR+IYHGGPTNSGKTY A+E LK+A A     DG  G++ GPLRLLALEVYE++
Sbjct:    2 SAADLRAPEEWYPKARLSRRRVIYHGGPTNSGKTYHALEALKRADA-----DGGGGVYAGPLRLLALEVYERL 69
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7284.15478.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
RNA7.170e-26473.82helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880... [more]
RNA9.580e-18980.79helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID... [more]
Uncharacterized3.810e-1855.05protein n=1 Tax=Pythium oligandrum TaxID=41045 Rep... [more]
Hypothetical4.410e-1851.52protein (Fragment) n=2 Tax=Spumella elongata TaxID... [more]
RNA6.200e-1852.21helicase n=1 Tax=Pythium insidiosum TaxID=114742 R... [more]
RNA1.920e-1747.92helicase (Fragment) n=1 Tax=Euryarchaeota archaeon... [more]
RNA1.920e-1747.47helicase n=1 Tax=Micractinium conductrix TaxID=554... [more]
RNA9.530e-1745.92helicase n=1 Tax=Chlorella variabilis TaxID=554065... [more]
Helicase1.050e-1659.49ATP-binding domain-containing protein n=1 Tax=arch... [more]
RNA1.460e-1661.64helicase (Fragment) n=1 Tax=Aureococcus anophageff... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7284contigE_fasciculatus_S2_contig7284:2555..7297 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score762.7
Seed ortholog evalue1.4e-217
Seed eggNOG ortholog2880.D8LD59
Preferred nameSUPV3L1
Model size1986
KEGG rclassRC00061
KEGG koko:K03942,ko:K17675
KEGG TC3.D.1.6
KEGG ReactionR11945
KEGG Pathwayko00190,ko01100,ko04714,ko04723,ko04932,ko05010,ko05012,ko05016,map00190,map01100,map04714,map04723,map04932,map05010,map05012,map05016
KEGG ModuleM00143
Hectar predicted targeting categorymitochondrion
GOsGO:0000002,GO:0000003,GO:0000166,GO:0000177,GO:0000178,GO:0000372,GO:0000375,GO:0000376,GO:0000957,GO:0000958,GO:0000959,GO:0000960,GO:0000962,GO:0000963,GO:0000965,GO:0001410,GO:0001558,GO:0001889,GO:0003674,GO:0003676,GO:0003677,GO:0003678,GO:0003723,GO:0003724,GO:0003725,GO:0003824,GO:0004004,GO:0004386,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0005759,GO:0006091,GO:0006119,GO:0006139,GO:0006163,GO:0006259,GO:0006260,GO:0006261,GO:0006264,GO:0006310,GO:0006325,GO:0006378,GO:0006396,GO:0006397,GO:0006399,GO:0006401,GO:0006402,GO:0006417,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006970,GO:0006996,GO:0007005,GO:0007275,GO:0008026,GO:0008033,GO:0008144,GO:0008150,GO:0008152,GO:0008186,GO:0008380,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009060,GO:0009117,GO:0009123,GO:0009126,GO:0009141,GO:0009144,GO:0009150,GO:0009161,GO:0009167,GO:0009199,GO:0009205,GO:0009259,GO:0009268,GO:0009295,GO:0009607,GO:0009628,GO:0009651,GO:0009653,GO:0009889,GO:0009891,GO:0009892,GO:0009893,GO:0009894,GO:0009896,GO:0009937,GO:0009939,GO:0009966,GO:0009967,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010570,GO:0010604,GO:0010605,GO:0010608,GO:0010628,GO:0010629,GO:0010646,GO:0010647,GO:0010928,GO:0010929,GO:0010941,GO:0015980,GO:0016043,GO:0016070,GO:0016071,GO:0016310,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0017144,GO:0019219,GO:0019222,GO:0019439,GO:0019637,GO:0019693,GO:0019954,GO:0022900,GO:0022904,GO:0023051,GO:0023056,GO:0030154,GO:0030307,GO:0030435,GO:0030436,GO:0030447,GO:0030554,GO:0031123,GO:0031124,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031329,GO:0031331,GO:0031974,GO:0032042,GO:0032268,GO:0032270,GO:0032392,GO:0032501,GO:0032502,GO:0032508,GO:0032553,GO:0032555,GO:0032559,GO:0032989,GO:0032990,GO:0032991,GO:0034248,GO:0034250,GO:0034458,GO:0034470,GO:0034641,GO:0034645,GO:0034655,GO:0034660,GO:0035639,GO:0035690,GO:0035945,GO:0035946,GO:0036094,GO:0036177,GO:0036180,GO:0036187,GO:0040007,GO:0040008,GO:0042221,GO:0042493,GO:0042623,GO:0042645,GO:0042710,GO:0042802,GO:0042803,GO:0042981,GO:0043066,GO:0043067,GO:0043069,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043487,GO:0043488,GO:0043631,GO:0043934,GO:0043936,GO:0043954,GO:0044010,GO:0044011,GO:0044182,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044270,GO:0044281,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0044528,GO:0044764,GO:0045025,GO:0045333,GO:0045727,GO:0045927,GO:0045935,GO:0046034,GO:0046483,GO:0046700,GO:0046983,GO:0047484,GO:0048468,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048646,GO:0048731,GO:0048732,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0051252,GO:0051254,GO:0051276,GO:0051703,GO:0051704,GO:0051716,GO:0055086,GO:0055114,GO:0060255,GO:0060548,GO:0061008,GO:0061013,GO:0065007,GO:0065008,GO:0070013,GO:0070035,GO:0070129,GO:0070131,GO:0070584,GO:0070784,GO:0070827,GO:0070887,GO:0071025,GO:0071026,GO:0071103,GO:0071214,GO:0071467,GO:0071704,GO:0071840,GO:0072521,GO:0080036,GO:0080038,GO:0080090,GO:0080134,GO:0090304,GO:0090605,GO:0090609,GO:0090615,GO:0090616,GO:0090646,GO:0097159,GO:0097222,GO:0097367,GO:0098798,GO:0104004,GO:0140053,GO:0140097,GO:0140098,GO:1900428,GO:1901000,GO:1901002,GO:1901135,GO:1901265,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901575,GO:1901576,GO:1902494,GO:1902584,GO:1903311,GO:1905354,GO:2000070,GO:2000112,GO:2000827
Exons6
EggNOG free text desc.mitochondrial RNA 3'-end processing
EggNOG OGsKOG0953@1,KOG0953@2759
EC1.6.5.3,1.6.99.3,3.6.4.13
Cds size1986
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03029
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7284.15478.1prot_E_fasciculatus_S2_contig7284.15478.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7284 2555..7297 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842392.8908002-CDS-E_fasciculatus_S2_contig7284:2554..38621696842392.8908002-CDS-E_fasciculatus_S2_contig7284:2554..3862Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7284 2555..3862 +
1696842392.9053981-CDS-E_fasciculatus_S2_contig7284:3916..40331696842392.9053981-CDS-E_fasciculatus_S2_contig7284:3916..4033Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7284 3917..4033 +
1696842392.9151468-CDS-E_fasciculatus_S2_contig7284:4748..48181696842392.9151468-CDS-E_fasciculatus_S2_contig7284:4748..4818Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7284 4749..4818 +
1696842392.9274774-CDS-E_fasciculatus_S2_contig7284:5206..54171696842392.9274774-CDS-E_fasciculatus_S2_contig7284:5206..5417Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7284 5207..5417 +
1696842392.9365277-CDS-E_fasciculatus_S2_contig7284:6631..67711696842392.9365277-CDS-E_fasciculatus_S2_contig7284:6631..6771Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7284 6632..6771 +
1696842392.9461427-CDS-E_fasciculatus_S2_contig7284:7157..72971696842392.9461427-CDS-E_fasciculatus_S2_contig7284:7157..7297Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7284 7158..7297 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7284.15478.1

>prot_E_fasciculatus_S2_contig7284.15478.1 ID=prot_E_fasciculatus_S2_contig7284.15478.1|Name=mRNA_E_fasciculatus_S2_contig7284.15478.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=662bp
MLAARRTYGLGRSTLRRGVAVSRCSRLGALADASTTRCRSTGNGSTLQQV
PAARRQHFSGGSTPGANSSAEVGLGAPGGEGGGGWSAARLARREWVRYQN
MMHQRAGLARRDQLSSLRGGVVGPSVGNGGGTGGVEASADSSPPPAAAPA
AAAAPSMPTPTGTVTLPPSATMATASSESTAVIDDWSTSSSSGGHPSSSS
SSSSSSSSSSSSSSDELRTTTKGTARGGPGGPDDGDSKASDAVPPIAPSH
QETSSRSRSEGAVITDLDSRREAALNAELERKFGTEPPQREEISGKPRRR
RSRGRGRRRGAARAVEGTANELQDGSPTEVSGAAGSETGEPNEVPVGEAA
GSITAMSGDRAKPESGEGTPRSKSADESRRGRRSRRGGSATGDGKGGESV
GRGGRGNKAAAASEGGGGGVKGSEGSSSSSSSSSSLNIRSAWKNIHAKKK
LRWLLRGLASDYWVQEMLARHHVSKDTMSKLLPAFEGLVLDDPDTAFPGE
AGQKLQEEVSSLCYHPKFQADAVLMKRPIRTRTTSGRSFTFSSKQLKRGR
EGPFVKERNDVVEKGFIPRLVELAQESYADEIEATKRMDSIVDLRNPQHG
FPLARLRKRRIIYHGGPTNSGKTYQAIERLKKAGANRQPGDGPAGLFCGP
LRLLALEVYEQV
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mRNA from alignment at E_fasciculatus_S2_contig7284:2555..7297+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7284.15478.1 ID=mRNA_E_fasciculatus_S2_contig7284.15478.1|Name=mRNA_E_fasciculatus_S2_contig7284.15478.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=4743bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7284:2555..7297+ (Ectocarpus fasciculatus EfasUO2)
ATGCTCGCTGCCAGGCGAACCTACGGCTTGGGACGCTCGACCCTGCGTAG
AGGTGTTGCCGTGTCACGATGCTCCCGGCTCGGTGCCCTTGCCGACGCCT
CCACCACTAGGTGTCGCAGCACGGGGAATGGCTCCACCTTACAGCAGGTC
CCAGCAGCCCGCCGACAGCACTTTAGCGGCGGCTCAACGCCGGGCGCTAA
TAGCTCGGCAGAAGTGGGCTTGGGGGCGCCAGGCGGCGAGGGCGGCGGCG
GCTGGAGCGCGGCACGGCTGGCGCGGAGGGAGTGGGTCAGGTACCAGAAC
ATGATGCACCAGCGAGCGGGCCTTGCTCGGCGGGACCAGCTGTCGTCGTT
GCGAGGAGGGGTTGTCGGCCCGAGCGTCGGCAATGGTGGTGGCACCGGAG
GTGTCGAGGCCAGTGCGGATTCTAGTCCTCCTCCTGCTGCTGCTCCTGCT
GCTGCTGCTGCTCCAAGTATGCCCACCCCGACTGGTACCGTGACGTTGCC
TCCTTCGGCAACGATGGCCACGGCTTCCAGCGAATCGACGGCTGTCATCG
ATGACTGGTCGACATCTAGTAGCTCAGGCGGCCACCCTAGCTCTAGCTCT
AGCTCTAGCTCTAGCTCTAGCTCTAGCTCTAGCTCTAGCTCTGACGAACT
CCGCACGACGACGAAAGGAACTGCTCGCGGAGGCCCGGGGGGGCCTGACG
ACGGCGACTCAAAGGCCTCGGACGCCGTACCCCCGATCGCGCCATCACAC
CAGGAAACCAGCAGCCGCAGCCGTAGCGAGGGTGCAGTCATCACGGATCT
GGACAGCAGAAGGGAGGCAGCGCTGAACGCAGAGCTGGAGAGAAAGTTCG
GGACGGAGCCGCCTCAGCGCGAGGAAATTTCCGGGAAACCTCGGCGCAGG
CGTTCGCGGGGGCGTGGCAGGAGGAGAGGGGCGGCGCGCGCCGTCGAAGG
CACCGCCAACGAGCTGCAAGACGGATCCCCCACAGAGGTATCAGGCGCTG
CTGGATCGGAGACCGGGGAGCCGAACGAGGTGCCCGTTGGAGAAGCGGCA
GGATCGATCACCGCCATGAGCGGTGATCGGGCCAAGCCAGAGAGCGGCGA
GGGGACTCCGCGGTCGAAGAGCGCAGACGAATCGCGCCGCGGGAGGAGAA
GTCGTAGGGGGGGGAGCGCTACTGGAGATGGAAAGGGGGGGGAATCTGTG
GGCCGGGGCGGGCGAGGGAATAAGGCAGCGGCCGCATCGGAGGGAGGAGG
AGGAGGGGTCAAGGGAAGCGAGGGTTCGTCCTCGTCCTCGTCCTCATCCT
CTTCTCTAGTCCTCCCGCACTCTTCTAGATCTAATCCTGTAACACAGCGG
TCTGCGTGGGAGAACATCCGGTCTGCGTGGAAGAACATCCACGCCAAGAA
GAAGCTGAGGTGGCTGTTGAGGGGACTCGCGAGCGACTACTGGGTGCAGG
AGATGCTCGCCCGCCACCACGTTTCAAAGGTGAGTTTGTTCAGGGATGAG
AATAACCTCGTGCCGACCATTCTCGGTCGTGCTACAATACAGCCTTTTTC
ACACGCCAGCGTGTCAAAGTTGTACAATTGCGAAGGTAGTAGCCCATCTT
CGGATTGCCCCAGCGGTGTCTGGCCAATCGCTCGTTGTCGACCGTTTCTG
CCAGGCTTTGTGGTATTTTATCCCTGAATATTAATATTTTCTCGGTCGTC
GTTGGCAAAACCAGCTCTTTGTTGAGACTATTGTACATACTACGCACGAA
CGAATCGTCGTGTCCCAAAGGTCATGTTTTCAAACTGATTGCCATTATTG
TACAATATGATGAAGGAGACCCGGGCTCGACTTGTTTTTTCTTGTCCCTG
CTGATAGAGTGAATGGTCCTGTCCTCGTGTCTATTAATAGTCGAAGCCGG
TACGAGGTATACCCCCAGAACGGAATCGGTACTGCATATGTACATATATA
ACAACACACAGTCCGTCGAGGGGAAGTCCCCATCCTCTCTTCGCACCCTC
TCTCTTCTCTCTGACATGTTTCTCTCTCTCTCTCTCTCTCTCTCTCTTTC
TCTCTGACATATTTCTCTCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
CTCTCTCTCTCTCTCTTTCTCTCTGACATATTTCCCTTTCCTTGTCGACG
TCTCGTCATCATTGTACTTTCATCGCTGTCACCTTTTCACGCAGGACACG
ATGTCCAAACTACTGCCCGCGTTTGAGGGCCTGGTCTTGGATGACCCCGA
CACCGCATTTCCAGGTGCATGAAGCCCGCCTATTTCTCTACGGACGGTGT
AGTAGATGGTAATGCACGGAGGCGTGACTCTCCTTTGTAGCTACGATGTG
TTTTGACGGCGGCTGTCGGCAAGCGCATATACGGCACTCACCACTGTTGA
TGCGCTTGCCTGGCGGCCTCACTACACGTTCGCACATGTAAAGCTGCCGC
AAGCCATAGCGTGTGCACATACCAGACGTTACGAAAAAGAAAGCACTGCG
GTGAATTACCAGGTAGTTGCTAATTCAATCTGGACTCTTCTTTTATGTGA
ATAGGGATGATGAGTTTGTTACATATAGAATAGATTTCAAGTAAAACCAT
CAACCAACGACCCCCCCCCCGCGCGCGAACAACAAAAACACAACCGGAAC
AGGTGAAGCCGGACAAAAGTTACAGGAGGAAGTGTCTTCCCTGTGCTACC
ACCCCAAGTTCCAGGCCGACGCTGTCCTGATGAAGAGGCCCATCAGAACA
AGGACCACTTCCGGGCGGTCGTTCACGTTCTCGTCCAAGCAGCTCAAGCG
GGGCCGTGAGGGACCGTTCGTCAAGGAACGCAACGACGTCGTAGAGAAGG
GTTTCATCCCAAGGTACCTGCGTGCGCTAGCCCGGCCGGGTGCTTTTTGT
TTGTTTGCGCAAAGGAGCAGAGTACAGCAGTGGGGGGGCATTGCCGGTAA
GGTAAGGTAAGGTAAGTGCCCAGATAATTGAAGGAAGGCACTACCACTAC
CGTAACAGTCGGAGAGTTTGCACCGGGTGCGATCGTTTTTTTAAATGTTT
TTTTCTCGTTTTTTTTTTTATCGCACCCCGGTGCCATCTCTCCGACCGGT
GCCATCTCTCCGGCCGGTGCCAACTCTCCGACTATTACGGTATGTACCGT
GCACCGGCAGTTTCAAGGTACAGAATGACTTGGCGATTCACTGTGTTCCC
GCCGAAAACATCGAAAACACAGGCAGAACAACGGCAACCAGCACTGTTCA
AGCGGCACTACACAGCCCCCCCCCCCACGCTGCGAGGTCTATGGTCTAAC
GACTACGGCATGCACGACTACATTTATGAACCCCCCCCCCACACGCTGAA
CTTTTCCTTCTATCCATCCTGTTTTTTTTCGGACCCTCCGCTCCGGTTCC
GGTGTCCGTGGGTCGAATGAATGTCGTAGATGTCGTAGATATAGTAGATA
TTGTACAATACATATCTTCTTAGAAACAATACATATCTTCTTAGAAACAG
GCTTCGTTTTCAGTTCGGCGTAAAGATCCATCCGCGGTTCCTCCAGCTGT
CGACTTGTTGTCGGCCATCTTTTGCGTCTTATTTTCGCGATGCCTAACTG
CCTGTACGGGCATCCCTGTCTCTGTGCGAGTTTGTTTGTGTCCTCGTCTT
TGTTTTATTTTGTTCTATTTTGTTTTGTTTTTTACTGGCACGTACCCCCG
CCCCTTCCTTTGGCCGTCTACCTGCCTCCTCGTACCGGGAGGCTACCCCC
CAGGCTGGTGGTGCGGACGTTCCACTATTTATTTATTTATTCGTTTGTGA
TTCTTTTGTTTTCTTGTATTTTATCGCTCTGCTGACCCTTGGGGTCCATT
TTATTTTGGTATACCTTTTCTAGGTACGTCAGCCTGTGACCACAGCAATT
TACCGAGTCAAGTGCTGGGTTAGTACGGAGAGATCGAGACAGAAGGAAGT
ACTGGATAGAGAGACCGGGACGGTTTCTAATGTGAAGGCAACAACAACAA
CAACAACAACAACAACAACAACAACAACAACCCAGTTCAACTTCAGCTCA
CAAACTCCTTCCTTCCGTTCGTGACAGGTTGGTCGAGCTGGCCCAGGAAA
GCTACGCCGACGAGATCGAGGCGACGAAGCGCATGGACAGCATCGTAGAT
CTGAGGAACCCTCAGCACGGATTCCCGCTCGCGAGGCTGAGAAAACGCCG
CATCATTTACCACGGAGGTGCGTACAAGTACAACAGCAGACAGCAGCGAC
TCTCACCCCCCCACCTCTCTCGTGAAGTACACAGCGGGCCTCCCGCTCCC
GCTTCGCGACGCCCTTGCGCCCCTACCCACCCTCCGCCTGACACCTATGC
CACCATCCCTATACAGCAGTGTCATTTTGCTTTGCGGCGAAACCGGCACT
ATTCACTATACTATTCACTATTGACTATTCACTATTCACTATTCACTATC
ACTATACTATTGACGTGTTCTTGTCTTGTCGTTGTCGCGACAGCAGTACA
GTACAGTACAGTACAGTACAACAGTAGTAACGCCTGCCGCACCGCCTACC
CGCAACAACTCACACACACAAATAAAAACAAAAACACTGTTTTTCATGCA
TAGGACCCACCAACTCCGGCAAGACTTACCAAGCGATCGAGCGCCTCAAG
AAGGCCGGCGCCAACAGGCAGCCGGGGGACGGGCCGGCGGGGCTGTTCTG
CGGACCGCTTCGGCTGCTGGCGCTGGAGGTGTACGAGCAGGTG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7284:2555..7297+

>mRNA_E_fasciculatus_S2_contig7284.15478.1 ID=mRNA_E_fasciculatus_S2_contig7284.15478.1|Name=mRNA_E_fasciculatus_S2_contig7284.15478.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=1986bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7284:2555..7297+ (Ectocarpus fasciculatus EfasUO2)
ATGCTCGCTGCCAGGCGAACCTACGGCTTGGGACGCTCGACCCTGCGTAG
AGGTGTTGCCGTGTCACGATGCTCCCGGCTCGGTGCCCTTGCCGACGCCT
CCACCACTAGGTGTCGCAGCACGGGGAATGGCTCCACCTTACAGCAGGTC
CCAGCAGCCCGCCGACAGCACTTTAGCGGCGGCTCAACGCCGGGCGCTAA
TAGCTCGGCAGAAGTGGGCTTGGGGGCGCCAGGCGGCGAGGGCGGCGGCG
GCTGGAGCGCGGCACGGCTGGCGCGGAGGGAGTGGGTCAGGTACCAGAAC
ATGATGCACCAGCGAGCGGGCCTTGCTCGGCGGGACCAGCTGTCGTCGTT
GCGAGGAGGGGTTGTCGGCCCGAGCGTCGGCAATGGTGGTGGCACCGGAG
GTGTCGAGGCCAGTGCGGATTCTAGTCCTCCTCCTGCTGCTGCTCCTGCT
GCTGCTGCTGCTCCAAGTATGCCCACCCCGACTGGTACCGTGACGTTGCC
TCCTTCGGCAACGATGGCCACGGCTTCCAGCGAATCGACGGCTGTCATCG
ATGACTGGTCGACATCTAGTAGCTCAGGCGGCCACCCTAGCTCTAGCTCT
AGCTCTAGCTCTAGCTCTAGCTCTAGCTCTAGCTCTAGCTCTGACGAACT
CCGCACGACGACGAAAGGAACTGCTCGCGGAGGCCCGGGGGGGCCTGACG
ACGGCGACTCAAAGGCCTCGGACGCCGTACCCCCGATCGCGCCATCACAC
CAGGAAACCAGCAGCCGCAGCCGTAGCGAGGGTGCAGTCATCACGGATCT
GGACAGCAGAAGGGAGGCAGCGCTGAACGCAGAGCTGGAGAGAAAGTTCG
GGACGGAGCCGCCTCAGCGCGAGGAAATTTCCGGGAAACCTCGGCGCAGG
CGTTCGCGGGGGCGTGGCAGGAGGAGAGGGGCGGCGCGCGCCGTCGAAGG
CACCGCCAACGAGCTGCAAGACGGATCCCCCACAGAGGTATCAGGCGCTG
CTGGATCGGAGACCGGGGAGCCGAACGAGGTGCCCGTTGGAGAAGCGGCA
GGATCGATCACCGCCATGAGCGGTGATCGGGCCAAGCCAGAGAGCGGCGA
GGGGACTCCGCGGTCGAAGAGCGCAGACGAATCGCGCCGCGGGAGGAGAA
GTCGTAGGGGGGGGAGCGCTACTGGAGATGGAAAGGGGGGGGAATCTGTG
GGCCGGGGCGGGCGAGGGAATAAGGCAGCGGCCGCATCGGAGGGAGGAGG
AGGAGGGGTCAAGGGAAGCGAGGGTTCGTCCTCGTCCTCGTCCTCATCCT
CTTCTCTAAACATCCGGTCTGCGTGGAAGAACATCCACGCCAAGAAGAAG
CTGAGGTGGCTGTTGAGGGGACTCGCGAGCGACTACTGGGTGCAGGAGAT
GCTCGCCCGCCACCACGTTTCAAAGGACACGATGTCCAAACTACTGCCCG
CGTTTGAGGGCCTGGTCTTGGATGACCCCGACACCGCATTTCCAGGTGAA
GCCGGACAAAAGTTACAGGAGGAAGTGTCTTCCCTGTGCTACCACCCCAA
GTTCCAGGCCGACGCTGTCCTGATGAAGAGGCCCATCAGAACAAGGACCA
CTTCCGGGCGGTCGTTCACGTTCTCGTCCAAGCAGCTCAAGCGGGGCCGT
GAGGGACCGTTCGTCAAGGAACGCAACGACGTCGTAGAGAAGGGTTTCAT
CCCAAGGTTGGTCGAGCTGGCCCAGGAAAGCTACGCCGACGAGATCGAGG
CGACGAAGCGCATGGACAGCATCGTAGATCTGAGGAACCCTCAGCACGGA
TTCCCGCTCGCGAGGCTGAGAAAACGCCGCATCATTTACCACGGAGGACC
CACCAACTCCGGCAAGACTTACCAAGCGATCGAGCGCCTCAAGAAGGCCG
GCGCCAACAGGCAGCCGGGGGACGGGCCGGCGGGGCTGTTCTGCGGACCG
CTTCGGCTGCTGGCGCTGGAGGTGTACGAGCAGGTG
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