mRNA_E_fasciculatus_S2_contig728.15474.1 (mRNA) Ectocarpus fasciculatus EfasUO2
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Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig728.15474.1 vs.
Match: Protein-serine/threonine (phosphatase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LD30_ECTSI) HSP 1 Score: 969 bits (2506), Expect = 0.000e+0 Identity = 749/1106 (67.72%), Postives = 767/1106 (69.35%), Query Frame = 1
Query: 1 MAMRRPKKLTRPTGSSSASRLGPGMKTMDLRFSPEGGWGLAG---GMRSSTXXXXXXXXXXKCTGVAAALPPRWVISWEVGPGATVDRGLKLAKLHCVGVDENGGPGDTKEHFIVAPREGILTELLVPSGGQVSPGQGQGCPDKDAPXXXXXXXXXXXXXXXXXXXXXXADAGAEPQSSGEGVVVGRISFCAHQELHGTLCTSCGRVVVPQSENGRGRGQGDAGXXXXXXX--ERREEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRLLNSKKLSLVLDLDNTLLHCSDHPDAGRVVVPGVDGIHALRLPNQQREYYIKLRPGLRRFLAQAATMFEMTIYTAGTSQYADAVASVLDPDRSLFQGRHFSTCYTPDLGRNTKSLERIFPNGLDMALIVDDRDDVWRGEQAKNLLLVRPYKFFMGQRSVPGGPTHDAGPHPQSPPKATAAPAPFRERLERSAERSPPSVAPKSGRPVVAEGGDGXXXXXXXXXXXXXXXXXXXGKEELGDREKGAVTTGRAKKPGRGEDXXXXXXXXRSVVKVSDDGXXXXXACPAEREKGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDKQVTSLGEGLARMLEEKXXXXXXXXXXXXXXXXXXXXXXXXXX--SLLGTKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKVVASAENDPQLDCTFKTLEAVHGAFYAPENSNHGQPRAAAGFLAKVRLRVLTGVRMVFSGVIPVSGAPADPRTHRLWMMAESHGATVERDIGRHTTHVVAARLGTAKTKTGLRMPGVFVVHLDWLMNSVWHCRRERETMFLLAGQICGGEPPPLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX----EAFPSRXXXXXXXXXXGVWGKGPGRPESRGSVGXXXXXXXXXXXXXXXXXXXXXXXXDGSSVGSDLDGLVDELENSS 3285
MAMRRPKKLTRPTGSSSASRLGPGMKTMDLRFSP GGWGLAG G R +T AALPPRWVISWEVGPGATVDRGLKLAKLHCVGVD++GGPGDTKE FIVAPREGILTELLVP+GGQVSPGQG CPD+D P D GAEPQ+SGEGVVVGRISFCAHQELHGTLCTSCGRVV+PQSENGR XXXXXXX ER+EE XXXXXXXXXXXXXXXXXXXXRLLNSKKLSLVLDLDNTLLHCSDHPDAGRVVVPGVDGIHALRLPNQQREYYIKLRPGLRRFLAQAATMFEMTIYTAGTSQYADAVASVLDPDRSLFQGRHFSTCYTPDLGRNTKSLERIFPNGLDMALIVDDRDDVWRGEQAKNLLLVRPYKFF+GQRSVPGGPTHDAGPHP FRERLERSAE SP KSGRP V E G XXXXXXXXXXXXXXXX E+LGDR+KGA+TTG+A+KP RG XXXXX +SVVKV DG A PAER G XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX DKQV SLGEGLARMLE K XXXXXXXXXXXXXXXXXX S+ GTK VVASAENDPQLDCTFKTLEAVHGAFYAPENSNHGQPRAAAGFLAKVRLRVLTGVRMVFSGVIPVSGAPADPRTHRLWMMAESHGATVERDIGRHTTHVVA RLGTAKTKTGLRMPGVFVVHLDWLMNSVWHCRRERETMFLLAGQICGG+PPPLXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX EAFPSR XXXX GVWG+GPGRPESRGSVG DGSSVGSDLDGLVDELENSS
Sbjct: 1 MAMRRPKKLTRPTGSSSASRLGPGMKTMDLRFSPAGGWGLAGVSSGSRGTTGP--------------AALPPRWVISWEVGPGATVDRGLKLAKLHCVGVDKDGGPGDTKEQFIVAPREGILTELLVPTGGQVSPGQG--CPDQDVPAADSASSKTPAAAAVAAAIR--TDDGAEPQASGEGVVVGRISFCAHQELHGTLCTSCGRVVLPQSENGRXXXXXXXXXXXXXXXXXERQEEGGGDTHQVLMKGXXXXXXXXXXXXXXXXXXXXRLLNSKKLSLVLDLDNTLLHCSDHPDAGRVVVPGVDGIHALRLPNQQREYYIKLRPGLRRFLAQAATMFEMTIYTAGTSQYADAVASVLDPDRSLFQGRHFSTCYTPDLGRNTKSLERIFPNGLDMALIVDDRDDVWRGEQAKNLLLVRPYKFFVGQRSVPGGPTHDAGPHPXXXXXXXXXXXXFRERLERSAEHSPLPGTTKSGRPGVGEDGXXXXXXXXXXXXXXXXXX-----EKLGDRDKGAMTTGQARKPSRGX-XXXXXNGKKSVVKVRHDGAGGGRASPAER--GEDEDSVVEINGVEVGRQQGEQQQLEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDKQVASLGEGLARMLENKRQEXXXXXXXXXXXXXXXXXXHAGGNRPSVPGTKKPTVAGDSTLDEDGKEKEKEEDAADAVG-------------------------------------------------------------------------------------------VVASAENDPQLDCTFKTLEAVHGAFYAPENSNHGQPRAAAGFLAKVRLRVLTGVRMVFSGVIPVSGAPADPRTHRLWMMAESHGATVERDIGRHTTHVVAVRLGTAKTKTGLRMPGVFVVHLDWLMNSVWHCRRERETMFLLAGQICGGDPPPLXXXXXXXXSSMSSADVNRRGSISSARRGRSSERGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDDGRGDEAFPSRGRSGXXXX--GVWGRGPGRPESRGSVGGRSGSMSSSIGRASSVSSGSAD--DGSSVGSDLDGLVDELENSS 985
BLAST of mRNA_E_fasciculatus_S2_contig728.15474.1 vs.
Match: Protein-serine/threonine (phosphatase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CNJ6_9STRA) HSP 1 Score: 169 bits (428), Expect = 1.060e-40 Identity = 91/154 (59.09%), Postives = 109/154 (70.78%), Query Frame = 1
Query: 796 RLLNSKKLSLVLDLDNTLLHCSDHPDAGRVVVPGVDGIHALRLPNQQREYYIKLRPGLRRFLAQAATMFEMTIYTAGTSQYADAVASVLDPDRSLFQGRHFSTCYTPDLGRNTKSLERIFPNGLDMALIVDDRDDVWRGEQAKNLLLVRPYKFF 1257
RL ++KLSLVLDLDNTLLH + PD D + A +LP + +KLRP LR FLA+AA FE+TIYTAGT +YA+ VA+ LDPD SLF R S T DLGR+TKSL RIFP +M L+VDDR+DVWRGEQAKNL+LVRPY F+
Sbjct: 100 RLRAARKLSLVLDLDNTLLHAT--PDVHAQTYKA-DDVFAFQLPGVPGTHCVKLRPHLREFLARAAQRFELTIYTAGTRRYAELVAAHLDPDNSLFARRIISATDTADLGRSTKSLSRIFPGATNMVLVVDDREDVWRGEQAKNLVLVRPYMFW 250
BLAST of mRNA_E_fasciculatus_S2_contig728.15474.1 vs.
Match: RNA (polymerase II subunit A C-terminal domain phosphatase n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GUY0_9STRA) HSP 1 Score: 143 bits (360), Expect = 6.440e-31 Identity = 114/362 (31.49%), Postives = 157/362 (43.37%), Query Frame = 1
Query: 223 WEVGPGATVDRGLKLAKLHCVGVDENGGPGDTKEHFIVAPREGILTELLVPSGGQVSPGQGQGCPDKDAPXXXXXXXXXXXXXXXXXXXXXXADAGAEPQSSGEGVVVGRISFCAHQ-ELHGTLCTSCGRVVVPQSENGRGRGQGDAGXXXXXXXERREEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRLLNSKKLSLVLDLDNTLLHCSDHPDAGRVVVP-GVDG--IHALRL-------PNQQREYYIKLRPGLRRFLAQAATMFEMTIYTAGTSQYADAVASVLDPDRSLFQGRHFSTCYTPDLGRNTKSLERIFPNGLDMALIVDDRDDVWRGEQAKNLLLVRPYKFFMGQRSV 1275
W V G V+ G +A+ C + G G+ + + AP +G + E+ G ++ PG + E S GE + R+++C H + G LC CGR P N G A +R EE RL+ S+KL LVLD+D+TLLH +D A V G+ +H L P +RE+++ LRPGL ++L Q + M+E+ IYTAGT YA+AVA + DPD+SLF R S P+LG K L+R FP M + VDDR DVW E NLL +RPY FF+G V
Sbjct: 91 WRVKVGQDVEIGDVMAECLC----KQPGGGNDRVFDLQAPLDGTVLEIFFKEG-ELVPGMTK----------------------------------KEDGSEGEAPTLLRMTYCDHPIVVGGGLCGLCGRT--PSLINKTALGDATAQGGVLIENQRPEEGISASMTLNVDGGNKILVSRDEAEGDHVRAMKRLIRSRKLLLVLDIDHTLLHATDDARAPAFVKSKGLPDRLLHRFMLDMSKEGVPGGEREHFVMLRPGLEQWLKQISKMYELYIYTAGTRLYAEAVARIFDPDKSLFGDRIISRTDVPELGM-VKRLQRFFPTEDRMVIAVDDRSDVWI-EDVNNLLTIRPYHFFLGMSDV 409
BLAST of mRNA_E_fasciculatus_S2_contig728.15474.1 vs.
Match: Protein-serine/threonine (phosphatase (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WEY5_9STRA) HSP 1 Score: 137 bits (344), Expect = 6.250e-30 Identity = 99/265 (37.36%), Postives = 125/265 (47.17%), Query Frame = 1
Query: 535 GVVVGRISFCAHQELHGTLCTSCGRVVVPQSENGRGRG---QGDAGXXXXXXXERREEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRLLNSKKLSLVLDLDNTLLHCSDH--PDAGRVVV-------PGV-----------DGIHALRLPNQQREYYIKLRPGLRRFLAQAATMFEMTIYTAGTSQYADAVASVLDPDRSLFQGRHFSTCYTPDL-GRNTKSLERIFPNGLDMALIVDDRDDVWRGEQAKNLLLVRPYKFF 1257
G VV + CAH + LC CGR V P G Q AG +R RL S+KLSL+LD+D+TLL C+ P +VV PG+ DGIH + + Q ++++LRP + FL +A+ FE TIYT G S YAD VA +LDP + F GR + TPDL KSL+RIFP G MAL+VDDR DVW+ E +LL VRPYKFF
Sbjct: 23 GGVVATVRLCAHGTVMAGLCALCGRRVAPSPVPGAAPSILPQPAAGAPSSGPGLKR---------VMVKGGLDLHVSHSEAQELGASNSRRLWESRKLSLILDIDHTLLECTSTLPPHLEALVVSRDGRGSPGLLDEVEQEVRRADGIHEICVDGVQ--HWVRLRPFVLTFLQEASETFEFTIYTHGKSSYADEVARILDPSGAYFGGRRVTREDTPDLFSEELKSLDRIFPGGAGMALVVDDRQDVWKTETLAHLLPVRPYKFF 276
BLAST of mRNA_E_fasciculatus_S2_contig728.15474.1 vs.
Match: RNA (polymerase II subunit A C-terminal domain phosphatase (Fragment) n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0G191_9RHOD) HSP 1 Score: 127 bits (318), Expect = 2.640e-29 Identity = 76/174 (43.68%), Postives = 99/174 (56.90%), Query Frame = 1
Query: 799 LLNSKKLSLVLDLDNTLLHCSDHPDAGRVVV--------PGVD--------GIHALRLPNQQREYYIKLRPGLRRFLAQAATMFEMTIYTAGTSQYADAVASVLDPDRSLFQGRHFSTCYTPDLGRNTKSLERIFPNGLDMALIVDDRDDVW---RGEQAKNLLLVRPYKFFMG 1263
LL+ + LSLVLDLD+TLLH +D P A ++ PG GIH L L Q +++KLRPGL FL + FE+ IYT GT YAD++A+++DP+R LF R S + N K+L R+FP M LIVDDR+DVW R + NL+ RPY FF G
Sbjct: 4 LLDRRLLSLVLDLDHTLLHATDDPRAKAALMMDDQSPKTPGTPMLSPAYHKGIHPLALDGQS--FFVKLRPGLGNFLRRMKNKFELHIYTMGTRSYADSIAAIIDPERKLFGERLTSRDDFEEGSLNQKNLRRVFPCDDTMVLIVDDREDVWLEDRSSKMPNLIKARPYHFFKG 175
BLAST of mRNA_E_fasciculatus_S2_contig728.15474.1 vs.
Match: Protein-serine/threonine (phosphatase (Fragment) n=2 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YMW6_NANGC) HSP 1 Score: 132 bits (332), Expect = 6.050e-29 Identity = 73/156 (46.79%), Postives = 105/156 (67.31%), Query Frame = 1
Query: 796 RLLNSKKLSLVLDLDNTLLHCSDHPDAGRVVVPGVDGIHALRLPNQQR--EYYIKLRPGLRRFLAQAATMFEMTIYTAGTSQYADAVASVLDPDRSLFQGRHFSTCYTPDLGRNTKSLERIFPNGLDMALIVDDRDDVWRGEQAKNLLLVRPYKFF 1257
+L ++KL+L+LD+D TLLH + P A R+ ++ +HA + NQ R ++ LRP LR FL+QA ++ +TIYT G YA VA +LDPDR+LF+ R S PDL KSL+R+FP G++MALI+DD VW+GEQ+++LL V P+KF+
Sbjct: 200 KLRRARKLNLILDIDLTLLHATIDPRAERLDHQKLE-VHAFDIFNQGRILRHWCCLRPHLRTFLSQAHALYVLTIYTHGRRDYAHQVARLLDPDRTLFEDRIVSRDDCPDL-HGQKSLQRLFPGGIEMALILDDSPQVWQGEQSRHLLPVLPFKFY 353
BLAST of mRNA_E_fasciculatus_S2_contig728.15474.1 vs.
Match: RNA (polymerase II subunit A C-terminal domain phosphatase n=2 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3A5N5_9RHOD) HSP 1 Score: 130 bits (328), Expect = 3.180e-28 Identity = 95/271 (35.06%), Postives = 127/271 (46.86%), Query Frame = 1
Query: 532 EGVVVGRISFCAHQELHGTLCTSCGRVV--------VPQSENGRGRGQGDAGXXXXXXXERREEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRLLNSKKLSLVLDLDNTLLHCSDHPDAGRVVV--------PGVD--------GIHALRLPNQQREYYIKLRPGLRRFLAQAATMFEMTIYTAGTSQYADAVASVLDPDRSLFQGRHFSTCYTPDLGRNTKSLERIFPNGLDMALIVDDRDDVW---RGEQAKNLLLVRPYKFFMG 1263
E V + I FC H + G LCT CGR + VP ++ R ++G RR E LL+ + LSLVLDLD+TLLH +D P A ++ PG GIH L L + +++KLRPGL FL + FE+ IYT GT YAD++A+++DP+R+LF R S + N K+L R+FP M LIVDDR+DVW R + NL+ RPY FF G
Sbjct: 72 ENVPICSIQFCTHAVIFGGLCTICGRDLSMVHFSQDVPSAQ--RVNVAYESGLVVSRDEARRTETDKAR---------------------------HLLDRRLLSLVLDLDHTLLHATDDPRAKAALIMDDQSPQTPGTPMLSPAHHRGIHQLVLDG--KSFFVKLRPGLGNFLRRMKKKFELHIYTMGTRPYADSIAAIIDPERTLFGERLTSRDDFEEGSLNQKNLRRVFPCDDTMVLIVDDREDVWLEDRSSRMPNLIKARPYHFFKG 311
BLAST of mRNA_E_fasciculatus_S2_contig728.15474.1 vs.
Match: Protein-serine/threonine (phosphatase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U164_9STRA) HSP 1 Score: 131 bits (329), Expect = 2.890e-27 Identity = 73/156 (46.79%), Postives = 105/156 (67.31%), Query Frame = 1
Query: 796 RLLNSKKLSLVLDLDNTLLHCSDHPDAGRVVVPGVDGIHALRLPNQQR--EYYIKLRPGLRRFLAQAATMFEMTIYTAGTSQYADAVASVLDPDRSLFQGRHFSTCYTPDLGRNTKSLERIFPNGLDMALIVDDRDDVWRGEQAKNLLLVRPYKFF 1257
+L ++KL+L+LD+D TLLH + P A R+ ++ +HA + NQ R ++ LRP LR FL+QA ++ +TIYT G YA VA +LDPDR+LF+ R S PDL KSL+R+FP G++MALI+DD VW+GEQ+++LL V P+KF+
Sbjct: 195 KLRLARKLNLILDIDLTLLHATIDPRAERLDHQKLE-VHAFDIFNQGRILRHWCCLRPHLRTFLSQAHALYVLTIYTHGRRDYAHQVARLLDPDRTLFEDRIVSRDDCPDL-HGQKSLQRLFPGGIEMALILDDSPQVWQGEQSRHLLPVLPFKFY 348
BLAST of mRNA_E_fasciculatus_S2_contig728.15474.1 vs.
Match: RNA (polymerase II subunit A C-terminal domain phosphatase n=1 Tax=Basidiobolus meristosporus CBS 931.73 TaxID=1314790 RepID=A0A1Y1XUV3_9FUNG) HSP 1 Score: 126 bits (317), Expect = 4.450e-26 Identity = 69/169 (40.83%), Postives = 101/169 (59.76%), Query Frame = 1
Query: 796 RLLNSKKLSLVLDLDNTLLHCSDHP-------DAGRVVVPGVDGIHALRLPNQQREYYIKLRPGLRRFLAQAATMFEMTIYTAGTSQYADAVASVLDPDRSLFQGRHFSTCYTPDLGRNTKSLERIFPNGLDMALIVDDRDDVWRGEQAKNLLLVRPYKFFMGQRSVPG 1281
RLL+S+KLSL++DLD T++H + P D + + I LP+ YYIKLRPGLR FL + ++E+ IYT GT YA AVA+V+DPD+ F+ R S + + + K+++R+FP M +I+DDR DVW + + NL+ V PY FF+G + G
Sbjct: 163 RLLSSRKLSLIVDLDQTIIHAAVDPTIEDWMNDENNINHSATNDIAKFVLPDSPTVYYIKLRPGLREFLKEITKIYELHIYTMGTRNYASAVANVIDPDQEFFKERILSRDESGSMTQ--KTIQRLFPCDTSMVVIIDDRGDVW--QWSPNLIKVSPYDFFVGIGDING 327
BLAST of mRNA_E_fasciculatus_S2_contig728.15474.1 vs.
Match: RNA (polymerase II subunit A C-terminal domain phosphatase n=1 Tax=Umbelopsis vinacea TaxID=44442 RepID=A0A8H7U8B3_9FUNG) HSP 1 Score: 121 bits (303), Expect = 5.150e-26 Identity = 65/163 (39.88%), Postives = 97/163 (59.51%), Query Frame = 1
Query: 796 RLLNSKKLSLVLDLDNTLLHCSDHPDAGRVVV-------PGVDGIHALRLPNQQREYYIKLRPGLRRFLAQAATMFEMTIYTAGTSQYADAVASVLDPDRSLFQGRHFSTCYTPDLGRNTKSLERIFPNGLDMALIVDDRDDVWRGEQAKNLLLVRPYKFFMG 1263
RLL +++LSL++DLD T++H + P G + P I LP YYIKLRP L+ FL + +E+ IYT GT YA+AVA+ +DPDR++F+ R S + L + K+++R+FP M +++DDR DVW + NL+ V+PY FF+G
Sbjct: 51 RLLETRRLSLIVDLDQTIIHAACDPTVGEWMNDKNSKNHPATKDIKQFVLPGSPLVYYIKLRPKLQEFLKEVTKQYELHIYTMGTRNYAEAVANKIDPDRTIFRERILSRDESGSLTQ--KNIQRLFPCDTSMVVVMDDRSDVWNW--SPNLIKVKPYDFFVG 209 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig728.15474.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig728.15474.1 >prot_E_fasciculatus_S2_contig728.15474.1 ID=prot_E_fasciculatus_S2_contig728.15474.1|Name=mRNA_E_fasciculatus_S2_contig728.15474.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=1096bp MAMRRPKKLTRPTGSSSASRLGPGMKTMDLRFSPEGGWGLAGGMRSSTSSback to top mRNA from alignment at E_fasciculatus_S2_contig728:15999..27288+ Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig728.15474.1 ID=mRNA_E_fasciculatus_S2_contig728.15474.1|Name=mRNA_E_fasciculatus_S2_contig728.15474.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=11290bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig728:15999..27288+ (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig728:15999..27288+ >mRNA_E_fasciculatus_S2_contig728.15474.1 ID=mRNA_E_fasciculatus_S2_contig728.15474.1|Name=mRNA_E_fasciculatus_S2_contig728.15474.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=3288bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig728:15999..27288+ (Ectocarpus fasciculatus EfasUO2)back to top |