mRNA_E_fasciculatus_S2_contig7278.15471.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7278.15471.1
Unique NamemRNA_E_fasciculatus_S2_contig7278.15471.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig7278.15471.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQJ3_ECTSI)

HSP 1 Score: 302 bits (774), Expect = 1.280e-87
Identity = 163/184 (88.59%), Postives = 169/184 (91.85%), Query Frame = 2 
Query:   77 SKSGNPLLTSACLALRPLETGGCAGAEDLAQALMGAGAWRAETAFFGQRNAAQASSSVKTPSLGKAAPALVQTSSLAPSLPXXXXXLSPQAGPEQGHRLSSPGATPAIESHHSVGGDQASGQSTADCCISLAQELVGGTQPCSSRRSEREQVVGSPRAPSWDMPSRQKKKARLSTNAMEGKSPP 628
            SKSGNPLLTSACLALRPLETGGCAGA+D A+ALMGAGAWRAETAFFG+R+AAQASSSVK PSL   APAL QT+SLA SLP   XXLSPQAGPEQGHRLSSPGATPA+E HHSVGGDQASGQSTADCCISLAQELVGG Q CSS R EREQVVGSPRAPSWDMPSRQKKKARLSTNAMEGKSPP
Sbjct: 1538 SKSGNPLLTSACLALRPLETGGCAGADDFARALMGAGAWRAETAFFGERSAAQASSSVKAPSLDNTAPALEQTASLALSLPPPPXXLSPQAGPEQGHRLSSPGATPAVEPHHSVGGDQASGQSTADCCISLAQELVGGAQQCSSGRGEREQVVGSPRAPSWDMPSRQKKKARLSTNAMEGKSPP 1721
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7278.15471.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized1.280e-8788.59protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQJ3... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7278contigE_fasciculatus_S2_contig7278:3707..5069 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start1
Model size1354
Hectar predicted targeting categoryother localisation
Exons2
Cds size528
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842392.1231544-UTR-E_fasciculatus_S2_contig7278:3706..38811696842392.1231544-UTR-E_fasciculatus_S2_contig7278:3706..3881Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig7278 3707..3881 +
1696842392.1437197-UTR-E_fasciculatus_S2_contig7278:4409..49251696842392.1437197-UTR-E_fasciculatus_S2_contig7278:4409..4925Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig7278 4410..4925 +
1696842392.1541278-UTR-E_fasciculatus_S2_contig7278:4934..50691696842392.1541278-UTR-E_fasciculatus_S2_contig7278:4934..5069Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig7278 4935..5069 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842392.1339676-CDS-E_fasciculatus_S2_contig7278:3881..44091696842392.1339676-CDS-E_fasciculatus_S2_contig7278:3881..4409Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7278 3882..4409 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7278.15471.1prot_E_fasciculatus_S2_contig7278.15471.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7278 3882..4409 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7278.15471.1

>prot_E_fasciculatus_S2_contig7278.15471.1 ID=prot_E_fasciculatus_S2_contig7278.15471.1|Name=mRNA_E_fasciculatus_S2_contig7278.15471.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=176bp
MGAGAWRAETAFFGQRNAAQASSSVKTPSLGKAAPALVQTSSLAPSLPPP
PPPLSPQAGPEQGHRLSSPGATPAIESHHSVGGDQASGQSTADCCISLAQ
ELVGGTQPCSSRRSEREQVVGSPRAPSWDMPSRQKKKARLSTNAMEGKSP
PPSSPRRVLPMRSSKQHHHHEGGGS*
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mRNA from alignment at E_fasciculatus_S2_contig7278:3707..5069+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7278.15471.1 ID=mRNA_E_fasciculatus_S2_contig7278.15471.1|Name=mRNA_E_fasciculatus_S2_contig7278.15471.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1363bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7278:3707..5069+ (Ectocarpus fasciculatus EfasUO2)
AATCGCTCTAGGTTTAAACGTCGGGGTGGGAGAGGGGGACAGCGGTGAGG
GCGGGGGTGGGGGTTCCGCGGCAGCGTCCAAGTCTGGAAACCCTCTTCTC
ACGTCGGCTTGCCTTGCGCTACGGCCGCTTGAAACTGGTGGCTGCGCGGG
TGCGGAGGATCTCGCGCAGGCTCTTATGGGTGCGGGAGCTTGGCGAGCGG
AGACCGCGTTCTTTGGGCAACGGAATGCAGCGCAGGCCTCTTCGTCAGTG
AAGACCCCTTCGTTGGGTAAGGCGGCCCCAGCGTTAGTACAGACGTCTTC
GTTGGCACCGTCATTGCCACCACCACCTCCGCCGCTATCGCCTCAAGCCG
GTCCTGAGCAGGGCCACCGCCTTTCTTCACCGGGGGCAACGCCGGCGATA
GAATCACATCACTCGGTCGGTGGCGATCAAGCCAGCGGACAGTCGACCGC
GGACTGTTGCATTTCTCTCGCCCAAGAACTGGTGGGCGGGACGCAGCCGT
GCAGTTCAAGGCGGAGCGAGCGTGAGCAAGTTGTGGGTTCGCCACGTGCA
CCGTCGTGGGACATGCCATCCCGCCAAAAAAAGAAGGCTCGCTTGAGCAC
CAATGCAATGGAGGGGAAATCGCCCCCACCAAGCTCTCCTCGACGGGTGT
TACCCATGCGTTCGTCCAAGCAGCACCACCACCACGAAGGTGGCGGGAGT
TAACGATGAAGTGGTCGAAATGGGGGAGCCGGAGTATTTACATCGCGTGC
AGCCGGTGCCGCGCAAGGTTACAGAAACGCCCGGAGTAGGGATAACTTTA
CGATGAAGTGGAACAATTCCACCAGTAGGATTTTATCTATACTGTTACAA
TTACAAATATGCATATCTATCAAAAGGGTTTTAATGTGAAGGCAACACCA
GCGTGTTCGCGGGAGGTCGAGGACAGGTGTGTCGTCCACTGCTCTTGGTA
ACATGCATGCTCTCGCGAAAGTGTGAAATAGCCGTAGCTCGGCAGACTAC
GATCATGCGCGAAGAGCAGCGATATTGTCGTGCGAAACGTGGTCAATCAG
AGAGGGGTAGGCGATCCGCTGAGGAATGATGGCCAGAAGGATGTGGATAT
CATTCCGCAGGTTTCGATACGCCTTTGTGGTAAGCCGGGGCATTCCAAAG
CCATCCGCGATATCCCTTTTGACTGCCTGCCAACCGAAGTATTTCGTTCG
CCGTACAATGAAGGGCATTGCATCAAAGGATACGTCGAGAAATAGTGATC
AATCCAACACTTGGCTCCATCCATGGAATCCACCTTACTTGCCACGTTGA
CCAGTGGTAGATTCCTCAGGCCTCTCCTGAGGTGATCATGGGTTTGTGGG
GTTCGAATACGCG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7278:3707..5069+

>mRNA_E_fasciculatus_S2_contig7278.15471.1 ID=mRNA_E_fasciculatus_S2_contig7278.15471.1|Name=mRNA_E_fasciculatus_S2_contig7278.15471.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=528bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7278:3707..5069+ (Ectocarpus fasciculatus EfasUO2)
ATGGGTGCGGGAGCTTGGCGAGCGGAGACCGCGTTCTTTGGGCAACGGAA
TGCAGCGCAGGCCTCTTCGTCAGTGAAGACCCCTTCGTTGGGTAAGGCGG
CCCCAGCGTTAGTACAGACGTCTTCGTTGGCACCGTCATTGCCACCACCA
CCTCCGCCGCTATCGCCTCAAGCCGGTCCTGAGCAGGGCCACCGCCTTTC
TTCACCGGGGGCAACGCCGGCGATAGAATCACATCACTCGGTCGGTGGCG
ATCAAGCCAGCGGACAGTCGACCGCGGACTGTTGCATTTCTCTCGCCCAA
GAACTGGTGGGCGGGACGCAGCCGTGCAGTTCAAGGCGGAGCGAGCGTGA
GCAAGTTGTGGGTTCGCCACGTGCACCGTCGTGGGACATGCCATCCCGCC
AAAAAAAGAAGGCTCGCTTGAGCACCAATGCAATGGAGGGGAAATCGCCC
CCACCAAGCTCTCCTCGACGGGTGTTACCCATGCGTTCGTCCAAGCAGCA
CCACCACCACGAAGGTGGCGGGAGTTAA
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