mRNA_E_fasciculatus_S2_contig7263.15459.1 (mRNA) Ectocarpus fasciculatus EfasUO2
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Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig7263.15459.1 vs.
Match: RPA_interact_C (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF43_ECTSI) HSP 1 Score: 314 bits (805), Expect = 4.950e-100 Identity = 152/172 (88.37%), Postives = 161/172 (93.60%), Query Frame = 1
Query: 436 MVDEDELGWGDGGGAEDYCDEENLLSPDEYLEMMDFIDEACREENRRAEAALVEDYERTRRLEEEAVECAVASFDDINGNGQDDAVLCPVCKRDYLLHPGPPSASIVCACGFRLDTGGDRLGLEQLKQQLADTYMEHSIACSAEPTFMVEGAPGFDVLWSSCDGCGFARVVL 951
MVDEDELGWGDGGGAED CDEE+LLSPDEYLEMM +I+EAC+EE+ RAEAA++EDYE TRRLEEE VE AVAS DDINGNGQDDAVLCPVCKRDYLLHPGPPSASIVCACGFRLDTGGDRLGLE KQQLADTY EHS ACSAEP+F+VEGAPGFDVLWSSCDGCGFARVVL
Sbjct: 1 MVDEDELGWGDGGGAEDDCDEEHLLSPDEYLEMMQYIEEACKEEDFRAEAAVLEDYELTRRLEEEEVEYAVASLDDINGNGQDDAVLCPVCKRDYLLHPGPPSASIVCACGFRLDTGGDRLGLEHFKQQLADTYSEHSTACSAEPSFVVEGAPGFDVLWSSCDGCGFARVVL 172
BLAST of mRNA_E_fasciculatus_S2_contig7263.15459.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTE2_9PHAE) HSP 1 Score: 166 bits (420), Expect = 3.420e-42 Identity = 141/197 (71.57%), Postives = 148/197 (75.13%), Query Frame = 1
Query: 1 NHERTALGYEDVGASPARSDSSXXXXXXXXXXXXXXXXXXXXXXXXXXX-SFLSAIEEENDSYLNACARGQEGSLQQRRPRDNSGSAAAVGLVPMFTSLREQTQGFVEGNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEAMVDEDELGWGDGGGAEDYCDEENLLSPDEYLEMMDFIDEACREENRRAEAA 588
NHERTALG E+ GAS R DS+ XXXXXXXXXXXXXXXXXXX SFLSAIEEEN SYLNACARGQ GSLQQR PRD + A L PM S REQTQGFVEGN XXXXXXXXXXXXXXXXXX MVDEDELGWGDGGGAED CDEENLLSPDEYLEMM +I+EAC+EE+ RAEAA
Sbjct: 124 NHERTALGCEEFGASLTRLDSNGXXXXXXXXXXXXXXXXXXXHAGGSESLSFLSAIEEENASYLNACARGQGGSLQQRGPRDGT----AAELAPMSISFREQTQGFVEGNNDEDDALMAHDDGHAQXXXXXXXXXXXXXXXXXX--MVDEDELGWGDGGGAEDCCDEENLLSPDEYLEMMQYIEEACKEEDLRAEAA 314
BLAST of mRNA_E_fasciculatus_S2_contig7263.15459.1 vs.
Match: Replication (protein A interacting C-terminal-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YX80_9STRA) HSP 1 Score: 99.4 bits (246), Expect = 1.330e-20 Identity = 61/156 (39.10%), Postives = 84/156 (53.85%), Query Frame = 1
Query: 508 LSPDEYLEMMDFIDEACREENRRAEAALVEDYERTRRLEEE--------AVECAVASFDDINGNGQDDAVLCPVCKRDYLLHPGPPSASIVCACGFRLDTGGDRLGLEQLKQQLADTYMEHSIACSAEPTFMVEGAPGFDVLWSSCDGCGFARVVL 951
L+P+EY +MM FI++A E RA+A+ A+ A A +D G +DD VLCPVCK +LL G A+I+C CGFRL T G+ + L L+Q LA+ + +H C +PTF V G +LWS C CGF ++VL
Sbjct: 5 LTPEEYTDMMLFIEQALAAELARADASXXXXXXXXXXXXXXXXXXXXXAALARAAAEAEDGRG-WRDDEVLCPVCKGGWLLQHG---ATIMCTCGFRLQTDGEGMQLGVLRQALAEVFTDHRERCHLQPTFRVREEFGAAMLWSECSACGFEQIVL 156
BLAST of mRNA_E_fasciculatus_S2_contig7263.15459.1 vs.
Match: RPA-interacting (protein A-like n=1 Tax=Saccoglossus kowalevskii TaxID=10224 RepID=UPI0003F09FB1) HSP 1 Score: 68.6 bits (166), Expect = 3.370e-9 Identity = 38/124 (30.65%), Postives = 65/124 (52.42%), Query Frame = 1
Query: 580 EAALVEDYERTRRLEEEAVECAVASFDDINGNGQDDAVLCPVCKRDYLLHPGPPSASIVCACGFRLDTGGDRLGLEQLKQQLADTYMEHSIACSAEPTFMVEGAPGFDVLWSSCDGCGFARVVL 951
E +++DYE++R+++E A+ AV + D ++CPVC+++ L + I CACG R+DT D + L +K +L + +HS AC+ + F G L +C C F ++L
Sbjct: 121 EQEIIQDYEKSRQIDEAALCAAVEKL-------ETDELICPVCRKNPL---NQNKSVIFCACGMRIDTEYDCVTLSYVKDRLKEAISQHSRACTGKALFSTLDQCGLQNLVIACKTCDFLDIIL 234
BLAST of mRNA_E_fasciculatus_S2_contig7263.15459.1 vs.
Match: Hypothetical (protein n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0VBY7_9CRYP) HSP 1 Score: 65.1 bits (157), Expect = 1.680e-8 Identity = 47/155 (30.32%), Postives = 74/155 (47.74%), Query Frame = 1
Query: 496 EENLLSPDEYLEMMDFIDEACREENRRAEAALVEDYERTRRLEEEAVECAVASFDDINGNGQDDAVLCPVCKRDYL-LHPGPPSASIVCACGFRLDTGGDRLGLEQLKQQLADTYMEH-SIACSAEPTFMVEGAPG-FDVLWSSCDGCGFARVVL 951
EE+ LS +EY+ +M +++EA E R+ E ++ ++E E + G+ V CPVC RD L H + C CG RL +++ L QL+ L D + H S C+ +P ++ PG D+L +C C F VV+
Sbjct: 31 EEDGLSEEEYIGLMQYLEEAVVTELRKQEQEIIAQE----LFDQERAESNALAASHAEGH----RVTCPVCMRDTLHSHRNV----VFCGCGMRLSCQTEQVSLVQLESMLLDRFAAHTSSGCANQPVCSIQTVPGGVDMLMMACAACDFMDVVV 173
BLAST of mRNA_E_fasciculatus_S2_contig7263.15459.1 vs.
Match: Uncharacterized (protein n=3 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8R075_SELML) HSP 1 Score: 59.3 bits (142), Expect = 4.330e-6 Identity = 50/157 (31.85%), Postives = 79/157 (50.32%), Query Frame = 1
Query: 508 LSPDEY----LEMMDFIDEACREENRRAEAALVEDYERTRRLEEEAVECAVASFDDINGNGQDDAVLCPVCKRDYLLHPGPPSASIVCACGFRLDTGGDR----LGLEQLKQQLADTYMEH-SIACSAEPTFMVEGAPGFDVLWSSCDGCGFARVVL 951
LSP EY L M + + E ++ +EDYE+ LE+ ++ AS + N Q++ VLCP+C+R +LL SI C+ LD G R +G+E ++ +LA+ +H S CS++P F + F L+ C+ C F VV+
Sbjct: 87 LSPQEYEDLMLAMQAVLYQGTYPEQQQHAIDDLEDYEKATALEDSSL----ASL--LEQNHQENGVLCPLCRRGFLLDK---ENSIRCSSNGCLDLGSQRDKLKVGVEFVRIRLAELMDQHYSSGCSSQPVFTFKDE--FQSLFILCNSCDFFEVVV 232
BLAST of mRNA_E_fasciculatus_S2_contig7263.15459.1 vs.
Match: uncharacterized (protein LOC9653983 n=1 Tax=Selaginella moellendorffii TaxID=88036 RepID=UPI000D1C7D68) HSP 1 Score: 57.8 bits (138), Expect = 2.880e-5 Identity = 42/125 (33.60%), Postives = 67/125 (53.60%), Query Frame = 1
Query: 592 VEDYERTRRLEEEAVECAVASFDDINGNGQDDAVLCPVCKRDYLLHPGPPSASIVCACGFRLDTGGDR----LGLEQLKQQLADTYMEH-SIACSAEPTFMVEGAPGFDVLWSSCDGCGFARVVL 951
+EDYE+ LE+ ++ AS + N Q++ VLCP+C+R +LL SI C+ LD G R +G+E ++ +LA+ +H S CS++P F + F L+ C+ C F VV+
Sbjct: 190 LEDYEKATALEDSSL----ASL--LEQNHQENGVLCPLCRRGFLLDK---ENSIRCSSNGCLDLGSQRDKLKVGVEFVRIRLAELMDQHYSSGCSSQPVFTFKDE--FQSLFILCNSCDFFEVVV 303 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7263.15459.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig7263.15459.1 >prot_E_fasciculatus_S2_contig7263.15459.1 ID=prot_E_fasciculatus_S2_contig7263.15459.1|Name=mRNA_E_fasciculatus_S2_contig7263.15459.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=225bp MFTSLREQTQGFVEGNNDDDDDHMAHDGGDAQQPRQPPQQQQQQQQQQQSback to top mRNA from alignment at E_fasciculatus_S2_contig7263:1551..5052- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig7263.15459.1 ID=mRNA_E_fasciculatus_S2_contig7263.15459.1|Name=mRNA_E_fasciculatus_S2_contig7263.15459.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=3502bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7263:1551..5052- (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7263:1551..5052- >mRNA_E_fasciculatus_S2_contig7263.15459.1 ID=mRNA_E_fasciculatus_S2_contig7263.15459.1|Name=mRNA_E_fasciculatus_S2_contig7263.15459.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=675bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7263:1551..5052- (Ectocarpus fasciculatus EfasUO2)back to top |