mRNA_E_fasciculatus_S2_contig7260.15456.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7260.15456.1
Unique NamemRNA_E_fasciculatus_S2_contig7260.15456.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig7260.15456.1 vs.
Match: Uncharacterized (protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTU0_ECTSI)

HSP 1 Score: 121 bits (303), Expect = 2.290e-31
Identity = 76/80 (95.00%), Postives = 76/80 (95.00%), Query Frame = 1 
Query:  211 SSSGSSTMQVVPQHYLSLMGSRRTSAEDFLSLLQDSEELQAREVPSMQDEEPEDSXXXXXXXXXXQHALLPPPARVPHNG 450
            SSSGSSTMQVVPQHYLSLMGSRRTSAEDFLSLLQDSEELQAREVPSMQDEEPEDS XXXXXXXX QHALLPPP RVP NG
Sbjct:   11 SSSGSSTMQVVPQHYLSLMGSRRTSAEDFLSLLQDSEELQAREVPSMQDEEPEDSSXXXXXXXX-QHALLPPPGRVPQNG 89
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BLAST of mRNA_E_fasciculatus_S2_contig7260.15456.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K231_9PHAE)

HSP 1 Score: 85.1 bits (209), Expect = 4.900e-16
Identity = 58/74 (78.38%), Postives = 62/74 (83.78%), Query Frame = 1 
Query:  232 MQVVPQHYLSLMGSRRTSAEDFLSLLQDSEELQAREVPSMQDEEPEDSXXXXXXXXXX-QHALLPPPARVPHNG 450
            + VVPQH+LSLMG+RRTSAEDFLSL      LQAREVPSMQDEE +DS XXXXXXXXX QHALLPPP RVP NG
Sbjct:  459 LPVVPQHFLSLMGARRTSAEDFLSL------LQAREVPSMQDEESDDSSXXXXXXXXXXQHALLPPPGRVPQNG 526
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7260.15456.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized2.290e-3195.00protein (Fragment) n=1 Tax=Ectocarpus siliculosus ... [more]
Uncharacterized4.900e-1678.38protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7260contigE_fasciculatus_S2_contig7260:2821..5320 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop0
Start0
Model size529
Hectar predicted targeting categoryother localisation
Exons5
Cds size528
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842390.6852813-CDS-E_fasciculatus_S2_contig7260:2820..28601696842390.6852813-CDS-E_fasciculatus_S2_contig7260:2820..2860Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7260 2821..2860 +
1696842390.6958342-CDS-E_fasciculatus_S2_contig7260:3625..37171696842390.6958342-CDS-E_fasciculatus_S2_contig7260:3625..3717Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7260 3626..3717 +
1696842390.7055156-CDS-E_fasciculatus_S2_contig7260:4026..40931696842390.7055156-CDS-E_fasciculatus_S2_contig7260:4026..4093Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7260 4027..4093 +
1696842390.715499-CDS-E_fasciculatus_S2_contig7260:4486..45991696842390.715499-CDS-E_fasciculatus_S2_contig7260:4486..4599Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7260 4487..4599 +
1696842390.7260652-CDS-E_fasciculatus_S2_contig7260:5104..53201696842390.7260652-CDS-E_fasciculatus_S2_contig7260:5104..5320Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7260 5105..5320 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7260.15456.1prot_E_fasciculatus_S2_contig7260.15456.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7260 2821..5320 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7260.15456.1

>prot_E_fasciculatus_S2_contig7260.15456.1 ID=prot_E_fasciculatus_S2_contig7260.15456.1|Name=mRNA_E_fasciculatus_S2_contig7260.15456.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=176bp
GSHHLPSHGLTASDLGVGSVMGGMRNTPSSSFLRSSFGQLTDLQVESMHQ
LQQQHVLGGGQSLNAGGANGSSSGSSTMQVVPQHYLSLMGSRRTSAEDFL
SLLQDSEELQAREVPSMQDEEPEDSSSQSQPQPQPQHALLPPPARVPHNG
GAGGSSGAAHPTSTPHPPQEATRPAA
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mRNA from alignment at E_fasciculatus_S2_contig7260:2821..5320+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7260.15456.1 ID=mRNA_E_fasciculatus_S2_contig7260.15456.1|Name=mRNA_E_fasciculatus_S2_contig7260.15456.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=2500bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7260:2821..5320+ (Ectocarpus fasciculatus EfasUO2)
GGGTCGCATCACCTCCCGAGCCATGGTCTCACAGCATCCGGTGAGTTGTG
GTGTTGCTGTTGTTGCTACTAGTGGTGGTGGTGGTGGTGGTGGTGGTGAA
GGTGGGGTTAGGTGTGGCCATGGCCGAGCTCTTCCATAATCGGCACTCCT
TCTGCTGCCGGATACTGCAGCTGCTGCTGTTGCTGCTGGTGGAGTTTTGG
GGGCGGCAGCTTTCGTGGTTGCTGTTGATGATTTTTTTCCCTCACTGTAA
ACGTTCCTGTATTACACCAAACTTCGATTCGAGGTCGATTTATTGTTGGG
GGCGGGGCGGGGGGTGAGGGGAGAGTAAGGGGTAGCTGTGCTTCCAGATT
TCGGCTCCGCGGGCCCCCTTCAGCCGGGTGCGCGAGCTGCGCATGTAGAG
GTACTGCCGCGAAACGTTTGACCTCTTGCCCTGCTCAGCCCCTTGGTCGC
GTGTCCTTCGTAGGGAAAGGGTGTGCGCCCAGCCTTAGCCCGTGTGCTAT
GGTCCCCCCACGCCTGCCCACCCCGCCGCCTGATAGGGATACGGACCACC
GAACTCCGTCCAATGCATGTGCATCTCAACCCCATCCCCCCCCCCCCCCC
CCCCCCTCCTCTTCTCTTCTCTTTGGGCCCGGCGGTGGCTTCGGGGGGGG
GGGGGGGGGGGGGGGGGGNNNNNNNNNNCCTTCCCCCCCCCCCCACCAAC
ACCGGCATATGCACCCCCACCCCCGACCTTTTTCCTGCTGTTCCATTCCC
CCCCCCCCCCCCCCCCCCCCCGTTTGTGTGTCATATCCTGGTCGGCCGGC
GTTAGACTTGGGCGTGGGAAGCGTGATGGGTGGGATGAGAAACACGCCCA
GCTCTTCTTTCCTCCGGAGTAGCTTCGGCCAGCTCACCGACTTGCAGGTG
TGTTGGACGGGCATATGTACGTGGTGGCCTGGGCGAGGCGGCGGCTGCGG
CGGCGGCGGCGGCAGGGGGGGGGTTCCCTTGGCCTTGGATGCGTTTCATG
TGCTTCCTTCGACGCTTTTGGACGGTAGTGCAGAAGGAGGATGTAGGAAC
TAATCAAAGGTATCTAGAGAGGACAAGCACACGCAATGACAGGCGTGGAT
TCGCTGTTGCATCCAACTGAAGCCCGTCCTTCCAACAACCAATACGGCTG
TTGTTCGTTGGTTTGTGTGCTGCATCTGCGCTGCTCGTGGCCCTTTTCCG
ATCAAGGTGGAGAGCATGCACCAGCTTCAGCAGCAGCATGTGCTGGGCGG
TGGGCAGTCCCTTAACGCTGGAGGTACTGATTTTAAAGCGTGTTAAAAGT
CGTGTCTTGAAAGTCCTGTGAAGGATTCATCGAGAGACGTACCTCTTGCG
TATTGACGTCTTGTGCTGAAAGTCTTGGGGAAGGGTTCATCGACAGACCC
AGCATGATACTTTTGCACCGACCGTGCTTGCAACAGACCTCGTCGGGCGG
GGCAGGATGCTACTGTACCGTAGGAACGTACAGACCTTACCTTGCCTGAA
CCACGCAACCCGTCAACGCTTGTTCAGCTGCTGTCATCACCTCCCTGCCA
CTGCATTTTGTTGATATGATGAAAGGTGACCCCGCAATATCTTAGGGCCC
AGTAAAACAGCTAGCAGCCAACCCCGCCCGCGCACGCCTTGCTTGCTTGC
TTGCTTGCATCGTCAGGAGCAAACGGCAGCAGCAGCGGCAGCAGCACCAT
GCAGGTCGTGCCCCAGCACTACTTGTCCTTGATGGGGTCGAGAAGAACAT
CGGCGGAAGACTTCCTGTCGCTCCTACAGGTATCTATCCACACCTTGTCC
TCTTTACCCTGTTGAGCGTGGCCCTCCTCAAACCTTGCTTGCTCTTTCTT
TCCGCTATGAGCCTCCGTGTGCTGCTCGCATCATGTGTCTACTGCGCTCG
CATCACGCGCCTGGTGCTCTCGCATCATGTGTCTGGCGCGTTCGCATCAT
GTGCCTGGTACGCGTTTTCGTGCTCGCACCGTGCTATTTTCCTTGGTTTG
TTGGGGAGGTAGCAGGCCACAATCTGGATGTTCGTGCCCCCGAAGTTGGG
TTTGTTTGAATATGGAGGGGGGAAAAAATCACCCCCGGAAGGCAGGAAAC
GGAAAGCGGCGGAATTGACCGTCCTCGCCGTTGGTTGTTTTGGTTCGTCT
GCTTCGGCGACCCTCCCCGCCCCCGCCTCTCGAGGACGCGCAGTTAATGG
TCTAACAAGTAAGGCATGCAAAACATGGGCAACCTCCCCATTGATACCGG
AACCGCTTCCTCCCATTCTCGCGCGTACCCGAAGGACTCGGAAGAGCTGC
AGGCGCGCGAGGTGCCCTCGATGCAGGACGAAGAGCCGGAAGACAGCAGC
AGCCAATCGCAGCCACAGCCGCAGCCGCAGCACGCTTTGCTCCCGCCACC
GGCCCGCGTTCCGCACAACGGCGGTGCCGGCGGAAGCAGCGGTGCCGCCC
ACCCAACATCGACGCCCCACCCGCCACAAGAAGCGACCCGCCCCGCAGCG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7260:2821..5320+

>mRNA_E_fasciculatus_S2_contig7260.15456.1 ID=mRNA_E_fasciculatus_S2_contig7260.15456.1|Name=mRNA_E_fasciculatus_S2_contig7260.15456.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=528bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7260:2821..5320+ (Ectocarpus fasciculatus EfasUO2)
GGGTCGCATCACCTCCCGAGCCATGGTCTCACAGCATCCGACTTGGGCGT
GGGAAGCGTGATGGGTGGGATGAGAAACACGCCCAGCTCTTCTTTCCTCC
GGAGTAGCTTCGGCCAGCTCACCGACTTGCAGGTGGAGAGCATGCACCAG
CTTCAGCAGCAGCATGTGCTGGGCGGTGGGCAGTCCCTTAACGCTGGAGG
AGCAAACGGCAGCAGCAGCGGCAGCAGCACCATGCAGGTCGTGCCCCAGC
ACTACTTGTCCTTGATGGGGTCGAGAAGAACATCGGCGGAAGACTTCCTG
TCGCTCCTACAGGACTCGGAAGAGCTGCAGGCGCGCGAGGTGCCCTCGAT
GCAGGACGAAGAGCCGGAAGACAGCAGCAGCCAATCGCAGCCACAGCCGC
AGCCGCAGCACGCTTTGCTCCCGCCACCGGCCCGCGTTCCGCACAACGGC
GGTGCCGGCGGAAGCAGCGGTGCCGCCCACCCAACATCGACGCCCCACCC
GCCACAAGAAGCGACCCGCCCCGCAGCG
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