mRNA_E_fasciculatus_S2_contig726.15454.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig726.15454.1
Unique NamemRNA_E_fasciculatus_S2_contig726.15454.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig726.15454.1 vs.
Match: SHQ1 (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCQ4_ECTSI)

HSP 1 Score: 132 bits (333), Expect = 8.580e-34
Identity = 64/72 (88.89%), Postives = 67/72 (93.06%), Query Frame = 1 
Query:    4 FTTRSLQVVPGQHFPDLDLTTTLMQPRWTPKDLLKERPSGGDEGGAEGGVPASSLSGVEVVSSERYDVHDDG 219
            F  + L+V+PGQHFPDLDLTTTLMQPRWTPKDLLKERPSGGDEGGAEG VPASS SGVEVVSSERYDVHDDG
Sbjct:  483 FKEKQLKVIPGQHFPDLDLTTTLMQPRWTPKDLLKERPSGGDEGGAEGVVPASSFSGVEVVSSERYDVHDDG 554
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BLAST of mRNA_E_fasciculatus_S2_contig726.15454.1 vs.
Match: SHQ1 (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J6M6_9PHAE)

HSP 1 Score: 131 bits (330), Expect = 1.610e-33
Identity = 65/76 (85.53%), Postives = 69/76 (90.79%), Query Frame = 1 
Query:   16 SLQVVPGQHFPDLDLTTTLMQPRWTPKDLLKERPSGGDEGGAEGGVPASSLSGVEVVSSERYDVHDDGDEDEYAGN 243
            ++ V+PGQHFPDLDLTTTLMQPRWTPKDLLKERPSGGDEGGAEG VP SS SGVEVVSSERYD+H DGD DE AGN
Sbjct:   77 TITVIPGQHFPDLDLTTTLMQPRWTPKDLLKERPSGGDEGGAEGDVPVSSFSGVEVVSSERYDIHGDGD-DEAAGN 151
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig726.15454.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
SHQ18.580e-3488.89domain-containing protein n=1 Tax=Ectocarpus silic... [more]
SHQ11.610e-3385.53domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig726contigE_fasciculatus_S2_contig726:19791..20610 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score135.6
Seed ortholog evalue1.4e-29
Seed eggNOG ortholog2880.D8LCQ4
Preferred nameSHQ1
Model size320
KEGG koko:K08597,ko:K14764
Hectar predicted targeting categoryother localisation
GOsGO:0000491,GO:0000493,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010605,GO:0010629,GO:0010941,GO:0010942,GO:0016043,GO:0016070,GO:0016072,GO:0019219,GO:0019222,GO:0022607,GO:0022613,GO:0022618,GO:0031323,GO:0031324,GO:0031974,GO:0031981,GO:0034470,GO:0034622,GO:0034641,GO:0034660,GO:0042254,GO:0042981,GO:0043065,GO:0043067,GO:0043068,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044085,GO:0044087,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045934,GO:0046483,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050794,GO:0051082,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0060255,GO:0065003,GO:0065007,GO:0070013,GO:0071704,GO:0071826,GO:0071840,GO:0080090,GO:0090069,GO:0090071,GO:0090304,GO:1901360,GO:2000232,GO:2000233
Exons2
EggNOG free text desc.box H/ACA snoRNP assembly
EggNOG OGsKOG3247@1,KOG3247@2759
EC3.4.22.68
Cds size318
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002,ko03009,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842390.5775752-CDS-E_fasciculatus_S2_contig726:19790..200011696842390.5775752-CDS-E_fasciculatus_S2_contig726:19790..20001Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig726 19791..20001 -
1696842390.591866-CDS-E_fasciculatus_S2_contig726:20503..206101696842390.591866-CDS-E_fasciculatus_S2_contig726:20503..20610Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig726 20504..20610 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig726.15454.1prot_E_fasciculatus_S2_contig726.15454.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig726 19791..20610 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig726.15454.1

>prot_E_fasciculatus_S2_contig726.15454.1 ID=prot_E_fasciculatus_S2_contig726.15454.1|Name=mRNA_E_fasciculatus_S2_contig726.15454.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=106bp
SFTTRSLQVVPGQHFPDLDLTTTLMQPRWTPKDLLKERPSGGDEGGAEGG
VPASSLSGVEVVSSERYDVHDDGDEDEYAGNNGGAEGGGGSRLPAEGAGE
AAEGRR
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mRNA from alignment at E_fasciculatus_S2_contig726:19791..20610-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig726.15454.1 ID=mRNA_E_fasciculatus_S2_contig726.15454.1|Name=mRNA_E_fasciculatus_S2_contig726.15454.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=820bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig726:19791..20610- (Ectocarpus fasciculatus EfasUO2)
TCCTTCACGACCCGTTCTTTGCAGGTGGTTCCGGGACAGCATTTCCCTGA
CCTCGATCTAACGACGACCCTGATGCAGCCCCGCTGGACGCCCAAGGACT
TGCTCAAGTGAGGGATCCTTCGCCCCCTGACCATCCCGTGTTGTCCTGTG
GTTCTTTTACCTGTTGTGGGTTTCGTTTTTGTTTTTTCCGTTTTATGGGT
TGGGGTCAGCGTTGTTGTGGAGACTCACAAGGGTTATTGCGTTCTGTGCA
CATGAGTGATTTTTATTGAGTTGGTGCTGTTGGTGATAGGCGGGGTTATT
TGTGTTATTGCCCTTGCCGGGGCTGCTGGTGCGGTGGTTCTACGTTGGAC
GATCGTTCCTATCACCCGCTTCTCGGCCGCATACGCCCACATGGCTGCCC
CCCCCCCAGATCATTTCCACCTTCACGTCGTCCCGCGTGTCTTAAATACT
CTGGCGTTGTCGTATTGATTTTCTTCCCTGCCTTGTGTACGTCCCCCCCC
CTTGTTTTTCTTCCTCAGCAATCTGCGTCCGTAGTACCCCCCCCCAGCCC
ACCCTCCCCGCCGCCAGTTGACACTCTCTCGTCCCGATCCCTATCCCTCG
CGCAACAAGAGAGCGGCCGAGCGGCGGAGACGAAGGCGGGGCCGAGGGCG
GCGTGCCTGCCTCCTCCTTGTCCGGCGTCGAGGTGGTCTCGTCGGAGCGC
TACGATGTCCATGACGACGGCGACGAAGACGAATACGCGGGCAACAACGG
TGGTGCGGAGGGTGGTGGTGGTTCGCGCCTCCCGGCGGAGGGCGCCGGCG
AAGCGGCGGAAGGGCGACGA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig726:19791..20610-

>mRNA_E_fasciculatus_S2_contig726.15454.1 ID=mRNA_E_fasciculatus_S2_contig726.15454.1|Name=mRNA_E_fasciculatus_S2_contig726.15454.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=318bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig726:19791..20610- (Ectocarpus fasciculatus EfasUO2)
TCCTTCACGACCCGTTCTTTGCAGGTGGTTCCGGGACAGCATTTCCCTGA
CCTCGATCTAACGACGACCCTGATGCAGCCCCGCTGGACGCCCAAGGACT
TGCTCAAAGAGCGGCCGAGCGGCGGAGACGAAGGCGGGGCCGAGGGCGGC
GTGCCTGCCTCCTCCTTGTCCGGCGTCGAGGTGGTCTCGTCGGAGCGCTA
CGATGTCCATGACGACGGCGACGAAGACGAATACGCGGGCAACAACGGTG
GTGCGGAGGGTGGTGGTGGTTCGCGCCTCCCGGCGGAGGGCGCCGGCGAA
GCGGCGGAAGGGCGACGA
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