mRNA_E_fasciculatus_S2_contig7258.15451.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7258.15451.1
Unique NamemRNA_E_fasciculatus_S2_contig7258.15451.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
BLAST of mRNA_E_fasciculatus_S2_contig7258.15451.1 vs.
Match: Glucose-6-phosphate (1-epimerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQL5_ECTSI)

HSP 1 Score: 484 bits (1245), Expect = 7.880e-172
Identity = 231/234 (98.72%), Postives = 234/234 (100.00%), Query Frame = 1
Query:    1 VKDYDYLFVRPDAMMDGSKPISGGLPHCFPQFGPGVIQQHGFGRNLEWEVVGSTDDSVSLKLSDNEETMAMWPHPFECVYKIALDGTTLQTELAVTNTGSEEFDFQAALHSYFRCSDINKVTISSPKLDGASYLNKMKDPPATETFSGTKMTISEEVDQVFKGVTGDISINDAGNSRVLVVSNTEGWADTVIWNPYGNEGMGADNFVCVESAQVGGEKLAAGKTWTGKMKLLPA 702
            VKDYDYLFVRPDAMMDGSKPISGGLPHCFPQFGPGVIQQHGFGRNLEWEVVGSTDDSVSLKLSDNEETMAMWPHPFECVYK+ALDGTTLQTELAVTNTGSE+FDFQAALHSYFRCSDINKVTISSPKLDGASYLNKMKDPPATETFSGTKMTISEEVDQVFKGVTGD+SINDAGNSRVLVVSNTEGWADTVIWNPYGNEGMGADNFVCVESAQVGGEKLAAGKTWTGKMKLLPA
Sbjct:   77 VKDYDYLFVRPDAMMDGSKPISGGLPHCFPQFGPGVIQQHGFGRNLEWEVVGSTDDSVSLKLSDNEETMAMWPHPFECVYKVALDGTTLQTELAVTNTGSEDFDFQAALHSYFRCSDINKVTISSPKLDGASYLNKMKDPPATETFSGTKMTISEEVDQVFKGVTGDVSINDAGNSRVLVVSNTEGWADTVIWNPYGNEGMGADNFVCVESAQVGGEKLAAGKTWTGKMKLLPA 310          
BLAST of mRNA_E_fasciculatus_S2_contig7258.15451.1 vs.
Match: Glucose-6-phosphate (1-epimerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNN9_9STRA)

HSP 1 Score: 275 bits (703), Expect = 4.110e-89
Identity = 129/237 (54.43%), Postives = 166/237 (70.04%), Query Frame = 1
Query:    1 VKDYDYLFVRPDAMMDGSKPISGGLPHCFPQFGPGVIQQHGFGRNLEWEVVGS---TDDSVSLKLSDNEETMAMWPHPFECVYKIALDGTTLQTELAVTNTGSEEFDFQAALHSYFRCSDINKVTISSPKLDGASYLNKMKDPPATETFSGTKMTISEEVDQVFKGVTGDISINDAGNSRVLVVSNTEGWADTVIWNPYGNEGMGADNFVCVESAQVGGEKLAAGKTWTGKMKLLPA 702
            V  YD LFVRPDA +DGSKPISGGLPHCFPQFGPG IQQHGF RNLEWE+  S      SV+LKL++NEET+AMWPH F+C+Y + L  + L T L + NTG+  FDFQ ALHSYFR  D+ + T+ +     ASYL+K   PPA  T+S   +TIS+ VD VF GV+G++++ DA   R L + N  G+ DT+IW+P+G++ MG  NF+CVES +V  + L  G+ W GKM L P+
Sbjct:   93 VDGYDSLFVRPDAKLDGSKPISGGLPHCFPQFGPGKIQQHGFARNLEWELESSRPGASPSVTLKLTENEETLAMWPHKFQCLYTVTLSSSILCTTLKIKNTGNSAFDFQTALHSYFRTGDVEQTTVKNGAFLFASYLDKTASPPADSTWSTGDITISKPVDYVFSGVSGEVTVEDAAARRKLKIKNLAGYEDTIIWSPFGDDNMGYKNFICVESGKVTPQVLQPGEEWVGKMDLSPS 329          
BLAST of mRNA_E_fasciculatus_S2_contig7258.15451.1 vs.
Match: Glucose-6-phosphate (1-epimerase n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2CQS8_9EUKA)

HSP 1 Score: 274 bits (701), Expect = 6.010e-89
Identity = 128/230 (55.65%), Postives = 161/230 (70.00%), Query Frame = 1
Query:   13 DYLFVRPDAMMDGSKPISGGLPHCFPQFGPGVIQQHGFGRNLEWEVVGSTDDSVSLKLSDNEETMAMWPHPFECVYKIALDGTTLQTELAVTNTGSEEFDFQAALHSYFRCSDINKVTISSPKLDGASYLNKMKDPPATETFSGTKMTISEEVDQVFKGVTGDISINDAGNSRVLVVSNTEGWADTVIWNPYGNEGMGADNFVCVESAQVGGEK-LAAGKTWTGKMKLLP 699
            D L VRPDA MDGSKPISGG+PHCFPQFGPG +QQHGF RNL+W+V   T  SV   L +++ T+AMWPH FE  Y + L    L+TE  VTNTG   FDF AALHSY+  + +  + ISSP  +GA+YL+KM+ PPA  T S + +TIS E D V+KGV+GD+ + D+G  R L +SN  GW+DTV+WNPYGN+ MG D+FVCVESAQ      L   + WTG M ++P
Sbjct:   92 DVLMVRPDAKMDGSKPISGGIPHCFPQFGPGAMQQHGFARNLDWDVTEQTATSVVFSLKESDYTLAMWPHAFEAKYTVILTDDALRTEFTVTNTGDSAFDFTAALHSYWSITGVGNIKISSPAFEGATYLDKMQSPPADVTSSSSDITISAETDSVYKGVSGDVVLADSGRPRPLTISNQLGWSDTVLWNPYGNKDMGFDSFVCVESAQFATPVILQPSEYWTGAMDVVP 321          
BLAST of mRNA_E_fasciculatus_S2_contig7258.15451.1 vs.
Match: Glucose-6-phosphate (1-epimerase n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2H0V8_9STRA)

HSP 1 Score: 255 bits (651), Expect = 2.230e-81
Identity = 122/229 (53.28%), Postives = 157/229 (68.56%), Query Frame = 1
Query:   13 DYLFVRPDAMMDGSKPISGGLPHCFPQFGPGVIQQHGFGRNLEWEVVGSTDDSVSLKLSDNEETMAMWPHPFECVYKIALDGTTLQTELAVTNTGSEEFDFQAALHSYFRCSDINKVTISSPKLDGASYLNKMKDPPATETFSGTKMTISEEVDQVFKGVTGDISINDAGNSRVLVVSNTEGWADTVIWNPYGNEGMGADNFVCVESAQVGGEKLAAGKTWTGKMKLLP 699
            D++ VRPDA +DGSKPISGGL HCFPQFGPG IQQHGF RN++WE+V ST+ SV+L L  +E T AMW   FECV+ +++   +L T+L V N GS  FDFQAALHSYF  S +   +I     +GA+++NKM DPPA +  +  ++ I EE D+V+ GV  D  + D+G    L + N  GW DTV+WNP+G+EGMGADNFVCVESA      LA G TW   + L+P
Sbjct:   92 DWIAVRPDAKLDGSKPISGGLSHCFPQFGPGEIQQHGFARNVDWEMVESTESSVTLSLKPSEYTKAMWDKDFECVFSVSVTADSLDTKLIVRNLGSAPFDFQAALHSYFDISSVAGTSIGG-SFEGATFMNKMLDPPADQVETRAEIVIDEEYDRVYMGV-NDPVLKDSGKKAALKIVNGGGWKDTVLWNPFGDEGMGADNFVCVESAAFDPVPLAGGATWAATLSLVP 318          
BLAST of mRNA_E_fasciculatus_S2_contig7258.15451.1 vs.
Match: Glucose-6-phosphate (1-epimerase n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JU04_9STRA)

HSP 1 Score: 251 bits (641), Expect = 4.270e-80
Identity = 120/230 (52.17%), Postives = 163/230 (70.87%), Query Frame = 1
Query:   13 DYLFVRPDAMMDGSKPISGGLPHCFPQFGPGVIQQHGFGRNLEWEVVGSTDDSVSLKLSDNEETMAMWPHPFECVYKIALDGTTLQTELAVTNTGSEE-FDFQAALHSYFRCSDINKVTISSPKLDGASYLNKMKDPPATETFSGTKMTISEEVDQVFKGVTGDISINDAGNSRVLVVSNTEGWADTVIWNPYGNEGMGADNFVCVESAQVGGEKLAAGKTWTGKMKLLP 699
            +++ VRPDA MDGSKPISGGL HCFPQFGPG IQQHGF RNL+W ++G+ D SV+++L  N+ET AMW +PF C +++++   +L T+L V N G +  FDFQAALHSYF  S I  +TIS    DG+SYL+K  +PPAT T +  +++I+EE D+V+KGV   + I D+G  + L +SN  G+ DTV+W+PYGN+ MG + FVCVES       L  G++W G M L+P
Sbjct:   74 EWIAVRPDAKMDGSKPISGGLSHCFPQFGPGEIQQHGFARNLDWTIIGTGDSSVTMELKANDETRAMWDYPFLCTFEVSVTADSLDTKLLVKNIGEDAAFDFQAALHSYFDISSIGSITISG-SFDGSSYLDKTANPPATCTEARKEISIAEEYDRVYKGVNDPVLI-DSGKGKKLQISNKAGYLDTVLWSPYGNDAMGYEKFVCVESVAFDPIHLEPGESWLGDMSLIP 301          
BLAST of mRNA_E_fasciculatus_S2_contig7258.15451.1 vs.
Match: Glucose-6-phosphate (1-epimerase n=1 Tax=Chrysocystis fragilis TaxID=1411660 RepID=A0A7S0TAA9_9STRA)

HSP 1 Score: 251 bits (640), Expect = 8.790e-80
Identity = 122/230 (53.04%), Postives = 162/230 (70.43%), Query Frame = 1
Query:   13 DYLFVRPDAMMDGSKPISGGLPHCFPQFGPGVIQQHGFGRNLEWEVVGSTDDSVSLKLSDNEETMAMWPHPFECVYKIALDGTTLQTELAVTNTG-SEEFDFQAALHSYFRCSDINKVTISSPKLDGASYLNKMKDPPATETFSGTKMTISEEVDQVFKGVTGDISINDAGNSRVLVVSNTEGWADTVIWNPYGNEGMGADNFVCVESAQVGGEKLAAGKTWTGKMKLLP 699
            +++ VRPDA MDGSKPISGGL HCFPQFGPG IQQHGF RN++W +    + S + +L+ N+ T  +W  PF C +K+AL  ++L T L V NTG  E FDFQAALHSY   S I  V I+    +G+SYL+KM DPPAT T +  ++TI+EE D+V+ GV  D  + D+G  ++L + N+EG+ADTV+WNPYGN+ MG + FVCVES +     LAAG+TW+G M L+P
Sbjct:   86 EWIAVRPDAKMDGSKPISGGLSHCFPQFGPGEIQQHGFARNVDWAIADMGETSATFELTPNKYTREIWDKPFACQFKVALGPSSLDTTLTVVNTGRGESFDFQAALHSYLDVSSIGAVKIAG-SFEGSSYLDKMADPPATCTEARKEITIAEEYDRVYMGV-NDPVLKDSGKKKLLKIVNSEGYADTVLWNPYGNDAMGYEKFVCVESVKYDPVPLAAGETWSGVMSLVP 313          
BLAST of mRNA_E_fasciculatus_S2_contig7258.15451.1 vs.
Match: Glucose-6-phosphate (1-epimerase n=2 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1NJR6_9EUGL)

HSP 1 Score: 251 bits (642), Expect = 1.100e-79
Identity = 119/229 (51.97%), Postives = 154/229 (67.25%), Query Frame = 1
Query:   13 DYLFVRPDAMMDGSKPISGGLPHCFPQFGPGVIQQHGFGRNLEWEVVGSTDDSVSLKLSDNEETMAMWPHPFECVYKIALDGTTLQTELAVTNTGSEEFDFQAALHSYFRCSDINKVTISSPKLDGASYLNKMKDPPATETFSGTKMTISEEVDQVFKGVTGDISINDAGNSRVLVVSNTEGWADTVIWNPYGNEGMGADNFVCVESAQVGGEKLAAGKTWTGKMKLLP 699
            +++ VRPDA+MDGSKPISGGL HCFPQFGPG IQQHGF RN+ W +V S+  S + +L  N+ T  MW  PF C++K+ + GT+L TE  V NTG  +F+FQ ALHSYF  S I K +I    + G  ++NKM +PPA +  + T +TI EE D+V+ GV   + I D+G  + L + N  GW DTV+WNPYGN GMG DNFVCVES      KL+ G+ W G M L+P
Sbjct:  119 EFIAVRPDAVMDGSKPISGGLSHCFPQFGPGAIQQHGFARNVNWTLVESSASSATFELVPNDYTKEMWDKPFRCLFKVTVTGTSLDTEYIVENTGGADFEFQNALHSYFDISSIKKTSIGGSFI-GKKFMNKMANPPAEQVETRTIITIPEEYDRVYSGVNDPVLI-DSGKGKRLNIVNKSGWKDTVLWNPYGNTGMGYDNFVCVESVAFDPVKLSGGQKWVGSMSLVP 345          
BLAST of mRNA_E_fasciculatus_S2_contig7258.15451.1 vs.
Match: Glucose-6-phosphate (1-epimerase n=3 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A6V2TXV1_EMIHU)

HSP 1 Score: 249 bits (637), Expect = 1.570e-79
Identity = 117/230 (50.87%), Postives = 158/230 (68.70%), Query Frame = 1
Query:   13 DYLFVRPDAMMDGSKPISGGLPHCFPQFGPGVIQQHGFGRNLEWEVVGSTDDSVSLKLSDNEETMAMWPHPFECVYKIALDGTTLQTELAVTNTGSEEFDFQAALHSYFRCSDINKVTISSPKLDGASYLNKMKDPPATETFSGTKMTISEEVDQVFKGVTGDISINDAGNSRVLVVSNTEGWADTVIWNPYGNEGMGADNFVCVESAQVGGE-KLAAGKTWTGKMKLLP 699
            D L VRPDA +DGSKPISGG+P C+PQFGPG IQQHGF RNL+W VV  +D  V ++L+++  TM MWPH F+  Y + L+   L T+  VTNT S+   F  ALH+Y+ C DI+KV I +P   GA+YL+KM+ PPA    +   ++I   VD V+ GV+GD+ +  A ++  L + N+ GW+DTV+W+PYG+EGMG  NFVCVESAQ     KL  G+ WTG M+++P
Sbjct:   73 DVLAVRPDAKLDGSKPISGGIPFCWPQFGPGAIQQHGFARNLDWTVVEQSDSKVVMELTESAYTMDMWPHAFKLQYSVTLEDDRLATDFCVTNTDSKPLSFTGALHTYWSCDDIDKVAIKAPAFAGATYLDKMQSPPADVKSASDTISIGAPVDSVYAGVSGDVVLEGA-HASPLTIKNSVGWSDTVVWSPYGDEGMGYKNFVCVESAQAATPVKLEPGEYWTGAMEVVP 301          
BLAST of mRNA_E_fasciculatus_S2_contig7258.15451.1 vs.
Match: Glucose-6-phosphate (1-epimerase n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4CW58_9EUGL)

HSP 1 Score: 254 bits (650), Expect = 1.580e-79
Identity = 123/231 (53.25%), Postives = 159/231 (68.83%), Query Frame = 1
Query:   13 DYLFVRPDAMMDGSKPISGGLPHCFPQFGPGVIQQHGFGRNLEWEVVGSTDDSVSLKLSDNEETMAMWPHPFECVYKIALDGTTLQTELAVTNTGSEE-FDFQAALHSYFRCSDINKVTISSPKLDGASYLNKMKDPPATETFSGTKMTISEEVDQVFKGVTGDISINDAGNSRVLVVSNTEGWADTVIWNPYGNEGMGADNFVCVESAQVGGEKLAAGKTWTGKMKLLPA 702
            +++ VRPDA MDGSKPISGGL HCFPQFGPG IQQHGF RN++W V   ++ SV+ +L+ ++ T AMW  PF+C++ + L    L TEL V NTGS E FDFQAALHSYF  S I   ++      G ++LNKM DPPA +    +++TI+EE D+V+ GV  D  + D+G  + L + N+ GW DTV+WNPYGNEGMG DNFVCVES      +L AG+ W G M L+PA
Sbjct:  225 EWIAVRPDAKMDGSKPISGGLSHCFPQFGPGAIQQHGFARNVDWTVHSISESSVTYELTPSDYTRAMWDKPFKCLFTVTLKEDCLDTELVVENTGSAEAFDFQAALHSYFDISSIKNTSVGG-SFSGKTFLNKMLDPPAEQVEERSEITIAEEYDRVYAGV-NDPVLKDSGKGKQLKIVNSAGWKDTVLWNPYGNEGMGYDNFVCVESVAFTPVQLGAGEKWVGTMSLVPA 453          
BLAST of mRNA_E_fasciculatus_S2_contig7258.15451.1 vs.
Match: Glucose-6-phosphate (1-epimerase n=2 Tax=Choreotrichia TaxID=141411 RepID=A0A7S3VW40_9SPIT)

HSP 1 Score: 246 bits (628), Expect = 1.630e-78
Identity = 128/239 (53.56%), Postives = 156/239 (65.27%), Query Frame = 1
Query:    1 VKD-YDYLFVRPDAMMDGSKPISGGLPHCFPQFGPGVIQQHGFGRNLEWEVVGSTDDSVS----LKLSDNEETMAMWPHPFECVYKIALDGTTLQTELAVTNTGSEEFDFQAALHSYFRCSDINKVTISSPKLDGASYLNKMKDPPATETFSGTKMTISEEVDQVFKGVTGDISINDAGNSRVLVVSNTEGWADTVIWNPYGNEGMGADNFVCVESAQ-VGGEKLAAGKTWTGKMKLLP 699
            VKD  D L VRPDA MDGSKPISGG+PHCFPQFGPG IQQHGF RNL W VV S  D V     LKL+ ++ T  MW   FE  Y + L   +L  +L V NTGS  FDF  ALH+Y+  S I    I+     GA++LNKM DPPA +T    ++ I+EE D V+KGVTGD+ I D+G  R + +  T GW DTV+WNPYGNEGMG D+FVCVE A+ +    LA  +TWT  M ++P
Sbjct:   37 VKDGKDCLMVRPDAKMDGSKPISGGIPHCFPQFGPGEIQQHGFARNLPW-VVDSLADGVEPKLVLKLTPSDYTKGMWDKEFEATYTVTLKEDSLICDLGVKNTGSSAFDFTTALHTYWSISSIKNAKITGD-FQGATFLNKMLDPPAEQTCESGEIVITEETDSVYKGVTGDVVIEDSGIGRKINIKATGGWEDTVLWNPYGNEGMGYDSFVCVECAKALSPVNLAPAETWTASMSVVP 273          
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7258.15451.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Glucose-6-phosphate7.880e-17298.721-epimerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7... [more]
Glucose-6-phosphate4.110e-8954.431-epimerase n=1 Tax=Tribonema minus TaxID=303371 R... [more]
Glucose-6-phosphate6.010e-8955.651-epimerase n=1 Tax=Haptolina brevifila TaxID=1561... [more]
Glucose-6-phosphate2.230e-8153.281-epimerase n=2 Tax=Dictyocha speculum TaxID=35687... [more]
Glucose-6-phosphate4.270e-8052.171-epimerase n=1 Tax=Aureoumbra lagunensis TaxID=44... [more]
Glucose-6-phosphate8.790e-8053.041-epimerase n=1 Tax=Chrysocystis fragilis TaxID=14... [more]
Glucose-6-phosphate1.100e-7951.971-epimerase n=2 Tax=Eutreptiella gymnastica TaxID=... [more]
Glucose-6-phosphate1.570e-7950.871-epimerase n=3 Tax=Emiliania huxleyi TaxID=2903 R... [more]
Glucose-6-phosphate1.580e-7953.251-epimerase n=1 Tax=Eutreptiella gymnastica TaxID=... [more]
Glucose-6-phosphate1.630e-7853.561-epimerase n=2 Tax=Choreotrichia TaxID=141411 Rep... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7258contigE_fasciculatus_S2_contig7258:2684..5515 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score484.6
Seed ortholog evalue2.7e-134
Seed eggNOG ortholog2880.D7FQL5
Model size705
KEGG rclassRC00563
KEGG koko:K01792
KEGG ReactionR02739
KEGG Pathwayko00010,ko01100,ko01110,ko01120,ko01130,map00010,map01100,map01110,map01120,map01130
Hectar predicted targeting categoryother localisation
Exons6
EggNOG free text desc.glucose-6-phosphate 1-epimerase activity
EggNOG OGsCOG0676@1,KOG1594@2759
EC5.1.3.15
Cds size705
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7258.15451.1prot_E_fasciculatus_S2_contig7258.15451.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7258 2684..5515 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842390.281907-CDS-E_fasciculatus_S2_contig7258:2683..27441696842390.281907-CDS-E_fasciculatus_S2_contig7258:2683..2744Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7258 2684..2744 +
1696842390.3022892-CDS-E_fasciculatus_S2_contig7258:3228..34101696842390.3022892-CDS-E_fasciculatus_S2_contig7258:3228..3410Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7258 3229..3410 +
1696842390.3142-CDS-E_fasciculatus_S2_contig7258:3670..37871696842390.3142-CDS-E_fasciculatus_S2_contig7258:3670..3787Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7258 3671..3787 +
1696842390.3357632-CDS-E_fasciculatus_S2_contig7258:4242..43321696842390.3357632-CDS-E_fasciculatus_S2_contig7258:4242..4332Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7258 4243..4332 +
1696842390.3522363-CDS-E_fasciculatus_S2_contig7258:4920..50681696842390.3522363-CDS-E_fasciculatus_S2_contig7258:4920..5068Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7258 4921..5068 +
1696842390.36586-CDS-E_fasciculatus_S2_contig7258:5408..55151696842390.36586-CDS-E_fasciculatus_S2_contig7258:5408..5515Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7258 5409..5515 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7258.15451.1

>prot_E_fasciculatus_S2_contig7258.15451.1 ID=prot_E_fasciculatus_S2_contig7258.15451.1|Name=mRNA_E_fasciculatus_S2_contig7258.15451.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=235bp
VKDYDYLFVRPDAMMDGSKPISGGLPHCFPQFGPGVIQQHGFGRNLEWEV
VGSTDDSVSLKLSDNEETMAMWPHPFECVYKIALDGTTLQTELAVTNTGS
EEFDFQAALHSYFRCSDINKVTISSPKLDGASYLNKMKDPPATETFSGTK
MTISEEVDQVFKGVTGDISINDAGNSRVLVVSNTEGWADTVIWNPYGNEG
MGADNFVCVESAQVGGEKLAAGKTWTGKMKLLPA*
back to top

mRNA from alignment at E_fasciculatus_S2_contig7258:2684..5515+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7258.15451.1 ID=mRNA_E_fasciculatus_S2_contig7258.15451.1|Name=mRNA_E_fasciculatus_S2_contig7258.15451.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=2832bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7258:2684..5515+ (Ectocarpus fasciculatus EfasUO2)
GTGAAGGACTATGACTACCTCTTCGTTCGCCCGGACGCCATGATGGACGG ATCCAAGCCGAGTGAGAGGGGGTGGTTGTTGCGGCTGTAAGGCACGCGAT TGCTTGGTGCTTTGGTCGCGAGTTGCGAACGTTTCCTTCCTTCGCTTGCG GCTTTGTTGCGGGAGGCCGTCGGAGCTTTGTTTCGACCAGCTTGCCGTCC GATGGTCGTCCGATGGTCCTGTAGAATGGTTGTATCTGTTGCACCAGTAC GGGCATTAGAAGGTACCGAGCGGAGACCGGAACGGTTTTTAATGTGAAGA CAACAACAACAACAACAACAACAACAATCTGTGAGGCTGTTGCACGCAAC CCTTGTGACTAGCAAACGATCCGGCGAAAAAGCCCGCTGATACGAAGGCG TGTTTATTCCGTTTGGACCCCTACGCTAGCCTGACAGTCTGCGGACCCCG TAGTACCTTCTGTTTCCCACTGCAACGTTCCATGCGGACGCCCCATGTCT CACCCCCCCCCCCCAACCCGTCCTTCTGTTCCACACTACCACCAGTCTCG GGAGGTCTGCCCCACTGTTTCCCCCAGTTCGGACCCGGCGTGATCCAGCA GCACGGCTTCGGCCGTAACCTTGAGTGGGAGGTGGTCGGATCGACGGACG ACTCTGTGTCTCTCAAGCTCTCGGACAACGAGGAGACGATGGCCATGTGG CCTCACCCGTTCGAGTGCGTGTACAAGGTGACCGATCCCTTGTTAAGGCT TTAGAAGAAGAGAGGGCGGTACTGCCCCTCGACCATTGGGATGATCATCG GCATGTTGCGCTCCACTCAGCCAGTCATTCTCATTGGTGACGCGTGGGCG TGGGGGGTTTTGATCGTGCTACGGCCTAACCTTTTCTTTTTTGTCGCCAT CCATCCACCCAACCCCGCTACGGCTGCTGCTGCCTTGTTGCCTGGTTTGT ACACGCACGGCACGGACACGACACGACGACGGAACAGATCGCCCTTGACG GCACCACTCTGCAGACGGAGCTTGCCGTGACCAACACCGGCTCGGAAGAG TTCGACTTCCAAGCGGCGTTGCACAGCTACTTCCGTTGCTCCGACATCAA CAAGGTGGGTGTTTTTGTTTTTTTGATGCACCTGCGTTTTTTTATTGCTC TAGTTTTTTGTTTTCCAGTGTGGCGCATGTTCATTTGGCGAACTGCTCCT GCAAAGAGCCCAGGTTTCAGTTCCCAGCAGCGGGTATAGAGGTGGCCAAA GGAGGGTACAGGGGAGCTGAATAACCCCGAGAGGGTACACATACACCCCG TATGGTGAAGGCGATATAAACGGGGGAAGTCACTGCTCTTGGGGAAACTC ACTCCTGAACCGCGCTGGTGTGTTCGGTACGTCCAACTTGTCAGAAGCAA CAACGCTGAATGCAATTCCTGAGTCGTGCTTTGGCGCGTGCGCGTGCGCA CTGGCATTCGCTGCTGCTGCTCCTGTTGCTGCTGATGCTGGATTGTGGTC CCTGCTTTGTCCTAACCCTGCTGCTTCCCATTTACTGCTGGTGCTGCTCC TCCGTTCAGGTGACCATTTCCAGCCCCAAGCTAGACGGCGCGTCGTACCT TAACAAGATGAAGGACCCTCCCGCCACGGAAACTTTCTCCGGTACCAAGG TGATGCTTACCTCACCTTAGGTACCTTAGGTGCTGCTTACCGTTGCTGGT GCTGTGGTGCCTCCCTCTTGTGTGATGTTTTTGCTGTGCCGATCCGTTAA ACTCGTGCTGACGCTGAAGCTCTTACATTGGTCCCTTGCGAGAACTGTCG TCGGAGGTGATCGGTGGCAGCTGCAAAGAGACCTCATGTCTTTAAAACTG CAGTTGCCACACGGCCCGACGAATTATTGCAAGCTCTGGCAGAACGACGG CGTGTGTTGCAGGATCTTGTGAAGGTTAGCGACTGGTTCCACATATGGCG CAGTTCGTGTGGTGTATTGGGGCTCCCAAGACGGAGAGAGCATGCCTGCG TCGCGCTCCACACGAACGTTGGTCTTTCTCCACGTTTTCCACGTTTTGTC CCGCACGGTCTGCTGCTGTGCTGCCGCTGTTCTCACTCTCAGCTTTCGCT CCCCTCATACCTACCATCTCTCCCATCTGTCTTTGCCTCTCTCTCTCTCT GCCTCTCCCCGCCCCCTCCCCCCTCTCTCCCATAATCCGATGTCCGCTGC TCTCTCAATACGGCGGGGAACCAACAACAACAAAAAGATGACCATCTCCG AGGAGGTGGACCAGGTATTCAAGGGCGTCACGGGCGACATCTCCATCAAC GACGCCGGGAACAGCCGCGTCCTCGTGGTGAGCAACACCGAGGGCTGGGC GGACACGGTCATCTGGAACCCCTACGGCAACGAAGGTGAGCGAGCGGACC CACACCGCGGCTCAGGGACAGAAAAAAGTAAGCGACTACCCCCCACGGCG CGCGCTGAGAATACGCGCCTGCTCTGTGCGCCCGTCGAAGGCTACGGGTA AATAGTGACCAACAGCAGAGGTGGCACTAGCGGGAGGAGGAGGAGGACGA CGACGAATTGGTGTGAAATGAATATGTTATCGGTCTTCCGAAACAAGACA TGCAATTACTTACAGTAAGTCATGCACACCACAAAGCGATGACTTCCTCC TCTCAAATGCCTGTGGTGGTTCATTTGTATCTCATGCATGTCCCGAAATT CGTGGTGTTTCCTTCGACTCGACAGGAATGGGAGCGGACAACTTCGTTTG CGTGGAGAGCGCCCAGGTCGGCGGGGAGAAGCTCGCCGCGGGCAAGACGT GGACGGGAAAGATGAAATTGTTGCCGGCATAA
back to top

Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7258:2684..5515+

>mRNA_E_fasciculatus_S2_contig7258.15451.1 ID=mRNA_E_fasciculatus_S2_contig7258.15451.1|Name=mRNA_E_fasciculatus_S2_contig7258.15451.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=705bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7258:2684..5515+ (Ectocarpus fasciculatus EfasUO2)
GTGAAGGACTATGACTACCTCTTCGTTCGCCCGGACGCCATGATGGACGG
ATCCAAGCCGATCTCGGGAGGTCTGCCCCACTGTTTCCCCCAGTTCGGAC
CCGGCGTGATCCAGCAGCACGGCTTCGGCCGTAACCTTGAGTGGGAGGTG
GTCGGATCGACGGACGACTCTGTGTCTCTCAAGCTCTCGGACAACGAGGA
GACGATGGCCATGTGGCCTCACCCGTTCGAGTGCGTGTACAAGATCGCCC
TTGACGGCACCACTCTGCAGACGGAGCTTGCCGTGACCAACACCGGCTCG
GAAGAGTTCGACTTCCAAGCGGCGTTGCACAGCTACTTCCGTTGCTCCGA
CATCAACAAGGTGACCATTTCCAGCCCCAAGCTAGACGGCGCGTCGTACC
TTAACAAGATGAAGGACCCTCCCGCCACGGAAACTTTCTCCGGTACCAAG
ATGACCATCTCCGAGGAGGTGGACCAGGTATTCAAGGGCGTCACGGGCGA
CATCTCCATCAACGACGCCGGGAACAGCCGCGTCCTCGTGGTGAGCAACA
CCGAGGGCTGGGCGGACACGGTCATCTGGAACCCCTACGGCAACGAAGGA
ATGGGAGCGGACAACTTCGTTTGCGTGGAGAGCGCCCAGGTCGGCGGGGA
GAAGCTCGCCGCGGGCAAGACGTGGACGGGAAAGATGAAATTGTTGCCGG
CATAA
back to top