mRNA_E_fasciculatus_S2_contig7238.15427.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7238.15427.1
Unique NamemRNA_E_fasciculatus_S2_contig7238.15427.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig7238.15427.1 vs.
Match: Sulfatase (domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KYT6_9PHAE)

HSP 1 Score: 175 bits (443), Expect = 1.440e-49
Identity = 80/98 (81.63%), Postives = 89/98 (90.82%), Query Frame = 2 
Query:    2 HSIDWTPTFGSVVPGLPLAGMGKELSGLDQWNAIVGRRSAEEGPVRTELVVERVSYTFDTEAGKMVKESRPKGAFIHDGWKLLLQQSCALWETTKGDY 295
            HS+DWTPT GSVVP LPL GMGK+LSG DQW+AIVGRRSAEEGPVRTELV+ R SY FD++AG+MVKE  PKGAFIHDGWKL+L+QSCALWETTKGDY
Sbjct:  469 HSMDWTPTLGSVVPELPLDGMGKQLSGFDQWDAIVGRRSAEEGPVRTELVLGRTSYDFDSDAGEMVKEPLPKGAFIHDGWKLILRQSCALWETTKGDY 566
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BLAST of mRNA_E_fasciculatus_S2_contig7238.15427.1 vs.
Match: Sulfatase (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNW4_9PHAE)

HSP 1 Score: 161 bits (407), Expect = 5.390e-46
Identity = 73/98 (74.49%), Postives = 82/98 (83.67%), Query Frame = 2 
Query:    2 HSIDWTPTFGSVVPGLPLAGMGKELSGLDQWNAIVGRRSAEEGPVRTELVVERVSYTFDTEAGKMVKESRPKGAFIHDGWKLLLQQSCALWETTKGDY 295
            HS DWT T G VVPGLPLAGMGKELSG DQW+AIVGRRSAEEGPVR E+V+ R SYTFDT+  +MVK + P GA+IHDGWKL+LQ+SC LWET KG Y
Sbjct:  274 HSTDWTQTLGRVVPGLPLAGMGKELSGFDQWDAIVGRRSAEEGPVRKEMVLGRNSYTFDTDTAEMVKRASPWGAYIHDGWKLILQESCVLWETNKGSY 371
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BLAST of mRNA_E_fasciculatus_S2_contig7238.15427.1 vs.
Match: Formylglycine-dependent (sulfatase, C-terminal Formylglycine-dependent sulfatase, N-terminal n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7Y4_ECTSI)

HSP 1 Score: 161 bits (407), Expect = 1.220e-44
Identity = 72/98 (73.47%), Postives = 84/98 (85.71%), Query Frame = 2 
Query:    2 HSIDWTPTFGSVVPGLPLAGMGKELSGLDQWNAIVGRRSAEEGPVRTELVVERVSYTFDTEAGKMVKESRPKGAFIHDGWKLLLQQSCALWETTKGDY 295
            HS DWT T G VVPGLPLAGMGKELSG DQW+AIVGRRSAEEGPVRT++V+ R S+TFDT+  +MVK + P GA+IHDGWKL+LQ+SC LWET+KG Y
Sbjct:  406 HSTDWTQTLGRVVPGLPLAGMGKELSGFDQWDAIVGRRSAEEGPVRTDMVLGRNSFTFDTDTAEMVKRASPWGAYIHDGWKLILQESCVLWETSKGSY 503
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7238.15427.1 vs.
Match: Sulfatase (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZF8_9PHAE)

HSP 1 Score: 122 bits (306), Expect = 2.660e-32
Identity = 55/97 (56.70%), Postives = 67/97 (69.07%), Query Frame = 2 
Query:    2 HSIDWTPTFGSVVPGLPLAGMGKELSGLDQWNAIVGRRSAEEGPVRTELVVERVSYTFDTEAGKMVKESRPKGAFIHDGWKLLLQQSCALWETTKGD 292
            HS DWTPT G VVP LPL  MGKELSG DQW+AI+G    E G VRTELV+ R SY FD + G++V    P+GA+I+DGWK++L + C  W T   D
Sbjct:   78 HSTDWTPTLGRVVPDLPLGEMGKELSGFDQWDAIIGGGKGEGGGVRTELVLGRSSYVFDLDVGEIVNNPSPRGAYIYDGWKIILLERCTGWSTFSQD 174
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7238.15427.1 vs.
Match: Formylglycine-dependent (sulfatase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLS1_ECTSI)

HSP 1 Score: 95.9 bits (237), Expect = 5.360e-21
Identity = 46/73 (63.01%), Postives = 52/73 (71.23%), Query Frame = 2 
Query:    2 HSIDWTPTFGSVVPGLPLAGMGKELSGLDQWNAIVGRRSAEEGPVRTELVVERVSYTFDTEAGKMVKESRPKG 220
            HS DWTPTFGSVVP LPL  MGKELSG D W+AI+G    E G VRTELV+ R SY FD +AG++V   R  G
Sbjct:  443 HSTDWTPTFGSVVPDLPLGEMGKELSGFDHWDAIIGGGEGEGGGVRTELVLGRSSYVFDLDAGEIVNNPRCTG 515
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7238.15427.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
Sulfatase1.440e-4981.63domain-containing protein n=2 Tax=Ectocarpus TaxID... [more]
Sulfatase5.390e-4674.49domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
Formylglycine-dependent1.220e-4473.47sulfatase, C-terminal Formylglycine-dependent sulf... [more]
Sulfatase2.660e-3256.70domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
Formylglycine-dependent5.360e-2163.01sulfatase n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7238contigE_fasciculatus_S2_contig7238:4812..6066 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop0
Start0
Model size298
Hectar predicted targeting categoryother localisation
Exons3
Cds size297
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842387.760568-CDS-E_fasciculatus_S2_contig7238:4812..48481696842387.760568-CDS-E_fasciculatus_S2_contig7238:4812..4848Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7238 4813..4848 -
1696842387.7713094-CDS-E_fasciculatus_S2_contig7238:5596..58021696842387.7713094-CDS-E_fasciculatus_S2_contig7238:5596..5802Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7238 5597..5802 -
1696842387.7803876-CDS-E_fasciculatus_S2_contig7238:6011..60661696842387.7803876-CDS-E_fasciculatus_S2_contig7238:6011..6066Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7238 6012..6066 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7238.15427.1prot_E_fasciculatus_S2_contig7238.15427.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7238 4813..6066 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7238.15427.1

>prot_E_fasciculatus_S2_contig7238.15427.1 ID=prot_E_fasciculatus_S2_contig7238.15427.1|Name=mRNA_E_fasciculatus_S2_contig7238.15427.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=99bp
ALHRLDSHVWQRCAGSSAGWDGEGAERARPMERDRGQEVCRGRARAHGAG
CRARQLHLRHRGREDGERISSEGGLHPRRLEAASATKLCPLGDHKGGLP
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mRNA from alignment at E_fasciculatus_S2_contig7238:4812..6066-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7238.15427.1 ID=mRNA_E_fasciculatus_S2_contig7238.15427.1|Name=mRNA_E_fasciculatus_S2_contig7238.15427.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1255bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7238:4812..6066- (Ectocarpus fasciculatus EfasUO2)
GCACTCCATAGACTGGACTCCCACGTTTGGCAGCGTTGTGCCGGGTCTTC
CGCTGGTAAGGATCGAACTTTTTCTGTATAAGCTGTTGCTGTCTAATGTA
AGGCTAGTAAGGCTGGCGTGCCCTGAACCACGCTCTATTTCGATCGGCTT
GCTAGCCCTAGCTCTCAACGCACGAAACATCGTGACACCTCCATCTGTTC
CAAGCAACATAATTCACTGTACAACATTGCCCACCCCGATCCGCGATTAA
ACCATACCCGGCAGGCTGGGATGGGGAAGGAGCTGAGCGGGCTCGACCAA
TGGAACGCGATCGTGGGCAGGAGGTCTGCAGAGGAAGGGCCCGTGCGCAC
GGAGCTGGTTGTAGAGCGCGTCAGCTACACCTTCGACACCGAGGCCGGGA
AGATGGTGAAAGAATCTCGTCCGAAGGGGGCCTTCATCCACGACGGCTGG
AAGCTGCTTCTGCAACAAAGGTCAAAATTAATATTGACGAACGTGCTTCG
CGTGTGCATAGTGCGCGTAACAGAAATGAATAGAAAGTAGATTGAAATGT
TGCTGCTGCTGCTGTCTTTTGGTTGTTCACGGATTTGTTCTGGGTCTATT
TACATGTTTTGGACCTCTACCAGAGTGTACACCTTTTTTGGGAAGTGGCC
CTGGGGCCACGGAATGCGTCCGAGTGAGTTGGACCAGTACTGTACAGGTA
TAAAAAGGCACTGGGACCGGATCGATTTTTATCGTGAAGACAAGAACAAC
AACCAAACAGCAATGTGGAGGTGATTGGAACTTCGTGTAGGCTACGTAGT
CCCCACCATGAGCGTTTTCTCATCCGCTCTGGGGTGTTAGAGAAGGCGAT
GCGAGCTACTGCTGTAGTTGTGTCGAGTGTCACCCTTGAAGGTTATTGGC
AGGAGTCACAGCAAGTGCCGAAATTTGGCCATTCGGTGGCCGTAAAGCCA
CAAAGCAAAAACATACTGCATGTATATCTCGCGCGTCTGGACAGAGGGCT
GGAGTCAAACCCTTGAGTAACAGGGTCATTGGTCAAGGACTGATTGATCC
ATGGCTTTCACATTCAGGGCAGACGTGAAACACCGAACTTCTATCCGAGA
GCGCATGCCTGGTACTGTACATACAGTTGATACGTTTCATATTGTTTGCT
GAAAGCTCAACTTGAACACCTAGCCTTGTGCCTTTGCTTGTTATGTGCTC
CTGTCCTCTTCAACGCAGCTGTGCCCTCTGGGAGACCACAAAGGGGGACT
ACCCG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7238:4812..6066-

>mRNA_E_fasciculatus_S2_contig7238.15427.1 ID=mRNA_E_fasciculatus_S2_contig7238.15427.1|Name=mRNA_E_fasciculatus_S2_contig7238.15427.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=297bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7238:4812..6066- (Ectocarpus fasciculatus EfasUO2)
GCACTCCATAGACTGGACTCCCACGTTTGGCAGCGTTGTGCCGGGTCTTC
CGCTGGCTGGGATGGGGAAGGAGCTGAGCGGGCTCGACCAATGGAACGCG
ATCGTGGGCAGGAGGTCTGCAGAGGAAGGGCCCGTGCGCACGGAGCTGGT
TGTAGAGCGCGTCAGCTACACCTTCGACACCGAGGCCGGGAAGATGGTGA
AAGAATCTCGTCCGAAGGGGGCCTTCATCCACGACGGCTGGAAGCTGCTT
CTGCAACAAAGCTGTGCCCTCTGGGAGACCACAAAGGGGGACTACCC
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