mRNA_E_fasciculatus_S2_contig7238.15426.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7238.15426.1
Unique NamemRNA_E_fasciculatus_S2_contig7238.15426.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7238.15426.1 vs.
Match: Sulfatase (domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KYT6_9PHAE)

HSP 1 Score: 133 bits (334), Expect = 9.000e-34
Identity = 59/76 (77.63%), Postives = 65/76 (85.53%), Query Frame = 3 
Query:    3 ESCEFYCDGIVFDYLFHIETDPLETENLVESMPEKYAEMVERFEVATQDEVVPAYKPQEPAGLEEWKNFNNWVVAW 230
            +SC   CDGI FD+LFHIETDPLET NL E+MPEKY EMVERFEVAT+DEVVP YKPQ P+G+E WK FNNWVVAW
Sbjct:  581 DSCTTQCDGITFDFLFHIETDPLETANLAEAMPEKYVEMVERFEVATKDEVVPGYKPQGPSGMEAWKKFNNWVVAW 656
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7238.15426.1 vs.
Match: Sulfatase (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZF8_9PHAE)

HSP 1 Score: 103 bits (257), Expect = 1.410e-24
Identity = 48/76 (63.16%), Postives = 58/76 (76.32%), Query Frame = 3 
Query:    6 SCEFYCDGI-VFDYLFHIETDPLETENLVESMPEKYAEMVERFEVATQDEVVPAYKPQEPAGLEEWKNFNNWVVAW 230
            SC   C G  + D+LFHI+TDP ETENL +SMPEK+AEMV+RFEVAT DEVV  YKP +P  LE W  +N+W+VAW
Sbjct:  192 SCTVDCGGPELIDFLFHIDTDPYETENLRDSMPEKFAEMVQRFEVATTDEVVAEYKPAQPQALERWDEYNHWMVAW 267
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7238.15426.1 vs.
Match: Formylglycine-dependent (sulfatase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLS1_ECTSI)

HSP 1 Score: 105 bits (262), Expect = 5.850e-24
Identity = 49/76 (64.47%), Postives = 58/76 (76.32%), Query Frame = 3 
Query:    6 SCEFYCDGI-VFDYLFHIETDPLETENLVESMPEKYAEMVERFEVATQDEVVPAYKPQEPAGLEEWKNFNNWVVAW 230
            SC   C G  + D+LFHI+TDP ETENL +SMPEKYAEMV+RFEV+T DEVV  YKP +P  LE W  FN+W+VAW
Sbjct:  540 SCTVDCGGPELIDFLFHIDTDPYETENLRDSMPEKYAEMVQRFEVSTNDEVVAEYKPAQPQALERWDEFNHWMVAW 615
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7238.15426.1 vs.
Match: Formylglycine-dependent (sulfatase, C-terminal Formylglycine-dependent sulfatase, N-terminal n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7Y4_ECTSI)

HSP 1 Score: 104 bits (259), Expect = 1.490e-23
Identity = 49/93 (52.69%), Postives = 64/93 (68.82%), Query Frame = 3 
Query:    6 SCEFYCDGIVFDYLFHIETDPLET-----------------ENLVESMPEKYAEMVERFEVATQDEVVPAYKPQEPAGLEEWKNFNNWVVAWR 233
            +C   CDG V+D+LFHI+ DPLET                 ENLVE+MP+K+A+M  RFE+AT+DEV PAYKP+EP G  +W++FN WVVAW+
Sbjct:  518 TCISLCDGPVYDFLFHIDADPLETGELPTPKLIYDGDTYHQENLVETMPDKFADMKARFELATKDEVHPAYKPEEPMGFAKWQDFNTWVVAWQ 610
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7238.15426.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
Sulfatase9.000e-3477.63domain-containing protein n=2 Tax=Ectocarpus TaxID... [more]
Sulfatase1.410e-2463.16domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
Formylglycine-dependent5.850e-2464.47sulfatase n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
Formylglycine-dependent1.490e-2352.69sulfatase, C-terminal Formylglycine-dependent sulf... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7238contigE_fasciculatus_S2_contig7238:3161..4774 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start1
Model size374
Hectar predicted targeting categoryother localisation
Exons3
Cds size198
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842387.6873543-UTR-E_fasciculatus_S2_contig7238:3160..32281696842387.6873543-UTR-E_fasciculatus_S2_contig7238:3160..3228Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig7238 3161..3228 -
1696842387.717796-UTR-E_fasciculatus_S2_contig7238:4171..42021696842387.717796-UTR-E_fasciculatus_S2_contig7238:4171..4202Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig7238 4172..4202 -
1696842387.7285984-UTR-E_fasciculatus_S2_contig7238:4697..47741696842387.7285984-UTR-E_fasciculatus_S2_contig7238:4697..4774Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig7238 4698..4774 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842387.6974998-CDS-E_fasciculatus_S2_contig7238:3228..33401696842387.6974998-CDS-E_fasciculatus_S2_contig7238:3228..3340Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7238 3229..3340 -
1696842387.7070384-CDS-E_fasciculatus_S2_contig7238:4085..41711696842387.7070384-CDS-E_fasciculatus_S2_contig7238:4085..4171Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7238 4086..4171 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7238.15426.1prot_E_fasciculatus_S2_contig7238.15426.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7238 3229..4171 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7238.15426.1

>prot_E_fasciculatus_S2_contig7238.15426.1 ID=prot_E_fasciculatus_S2_contig7238.15426.1|Name=mRNA_E_fasciculatus_S2_contig7238.15426.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=66bp
MPRWWRDSRWPPRTKWSQHISRRSRRGWRNGKTSTTGWLPGDSNDEETLQ
HTDCRYLTPFRALVA*
back to top

mRNA from alignment at E_fasciculatus_S2_contig7238:3161..4774-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7238.15426.1 ID=mRNA_E_fasciculatus_S2_contig7238.15426.1|Name=mRNA_E_fasciculatus_S2_contig7238.15426.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1614bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7238:3161..4774- (Ectocarpus fasciculatus EfasUO2)
GCGAGAGTTGCGAGTTCTATTGCGACGGCATAGTGTTCGACTATCTGTTC
CACATCGAAACGGACCCTTTGGAGACGGTGCGTCGCTGTGTGCACGGCCT
TGTTCTCTTGTATCGATTGCATGGTACATGCTGCATGACATGGCTGGTAG
TTTCTTCTCTCATGTTTCTCCGTCGTCTGTTTCAGAGCGAGCCTAACACC
CACCCACTGGAAAGAGTTGTTTGCCTAGGCTGCTATCTGAACCGCCAATG
CGTACTGCGGCGAGAGCATCCCCGGAGATAATACCTGTGGGGCGTTAGAC
AAGCCACGGCGGTGTCATGCAATGCCGAACGAAATTGTCGGGTTGACGGT
GATGGTGGTTGCCAGATCGGTCCGCTCTCCGCCTCTTGTGATACACGAAC
GCCTTTATCAGTGCGCACCAAAAGGTGGACCTGAAATACCGACCCCCAGA
CCACACTTTTTCTCTCAAGGCAGAACAGCCGTTCAAAAGAAAGGGAGGGA
TGAAGAAAAACATGCTTCCTCGTTCTAGAACCACTTGTTTGTTGTCGATG
TTGTGGATGGCCATACCACCAGGAAAACCTGGTGGAATCGATGCCCGAGA
AGTATGCCGAGATGGTGGAGAGATTCGAGGTGGCCACCCAGGACGAAGTG
GTCCCAGCATATAAGCCGCAGGAGCCGGCGGGGCTGGAGGTGAGTTTGTC
TTGGTTAGTGTAGTGGTTGTAGTTGTTGTTGTTGTTGTTGTTGTTGTTGT
TGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGGTGGTGGTGGTGGTG
GTGTTGGTGGTGGTGGTGGTGTTGGTGTTGTTGTTGTTGTTGGTAGAGAT
TTTGCATCACAGTGGAAATTGGTCCTATCCTTGGCGACCCATCGCTCCCG
CACCGATCCCAAAAGTACAGCTGACAACCTGTCTCTAGGGCACGTTAGAG
TTTAGGGTTCGGATCCCTCGACACAAAAACTAAATATAGTAGACGACGAG
GCCTGCAAATGGAGGATAGCGGTTCCATGAACCACCCGATCGGGGTGCAC
TGCTTATAGGGCCTATGCTGGTTCCTGACGGTGTTTGTTGCCCCTGACGA
CTTGACCATACAGAAACCTAAGAGAGCAGGCATGCGAATGCACCCGTTCA
CTCTGCATGAACCCCGCTGAGTGAAGAAGTGCTTCCGAGTGGAACAGAAA
ATGCTGACGTGAGACTAAAACGCTAACCATTTGTTTTCTTAACAACTAGA
ACTACTGTAGCACTCATACACATTCCATCACGGGCGTTCGCGCCTTCATT
ACCCCGCCCCGGCGCGAGGTCAATGATCAAGCGACTACGGCATGCACGGC
AATGAGTACACCCTCCCCCCTCCCCGGCGCCCTGTCCCCTCGTGCTTCAC
CGGCCCTCACCAACACGCCGGGCCGTCATGGCAGGAATGGAAAAACTTCA
ACAACTGGGTGGTTGCCTGGCGATAGCAACGACGAGGAGACGCTGCAACA
CACGGACTGTAGGTACCTAACTCCCTTTCGCGCGTTGGTTGCTTAACACG
TGTACTGAACTTTGGGCATATTCGAGTGGTCAAATTGCTATTTAAACCTA
GGGGACCCGTGGGG
back to top

Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7238:3161..4774-

>mRNA_E_fasciculatus_S2_contig7238.15426.1 ID=mRNA_E_fasciculatus_S2_contig7238.15426.1|Name=mRNA_E_fasciculatus_S2_contig7238.15426.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=198bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7238:3161..4774- (Ectocarpus fasciculatus EfasUO2)
ATGCCGAGATGGTGGAGAGATTCGAGGTGGCCACCCAGGACGAAGTGGTC
CCAGCATATAAGCCGCAGGAGCCGGCGGGGCTGGAGGAATGGAAAAACTT
CAACAACTGGGTGGTTGCCTGGCGATAGCAACGACGAGGAGACGCTGCAA
CACACGGACTGTAGGTACCTAACTCCCTTTCGCGCGTTGGTTGCTTAA
back to top