mRNA_E_fasciculatus_S2_contig7228.15409.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7228.15409.1
Unique NamemRNA_E_fasciculatus_S2_contig7228.15409.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig7228.15409.1 vs.
Match: SKA2 (domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LG11_ECTSI)

HSP 1 Score: 306 bits (785), Expect = 2.290e-103
Identity = 163/179 (91.06%), Postives = 170/179 (94.97%), Query Frame = 1 
Query:    1 HQLDSRMKDATRANVSIPDLHTLHHRIRAIKTELPRLAKDATEIEGERKETEIALNTALIENYNVMVGLYARLGVAPDPEWVATAAGVESFLPAPRDSGALSESFVSDGDEGEGIRSAVEEDAAQASTVPLHSGNPDLSASRVEERVVEQSPSVIFEEDFLAIHANTRGRSKLQDVRKV 537
            HQLDSRMKDATRANVSIPDLHTLHHRIRAIKTELP LAKDATE+E ERKETEIALNT +IENYNVMVGLYARLGVAPDPEWVATAA VESFLPAPRDSGA+S+SFVS GDEGEG+ SAVEEDA QASTV LHSGNP++SASRVEERVVEQS SVIFEEDFLAIHANTRGRSKLQDVRKV
Sbjct:   29 HQLDSRMKDATRANVSIPDLHTLHHRIRAIKTELPGLAKDATEVEAERKETEIALNTTVIENYNVMVGLYARLGVAPDPEWVATAADVESFLPAPRDSGAVSDSFVSGGDEGEGVGSAVEEDATQASTV-LHSGNPEMSASRVEERVVEQSFSVIFEEDFLAIHANTRGRSKLQDVRKV 206
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7228.15409.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
SKA22.290e-10391.06domain-containing protein n=2 Tax=Ectocarpus TaxID... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7228contigE_fasciculatus_S2_contig7228:3..3625 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop0
Start1
Model size537
Hectar predicted targeting categoryother localisation
Exons7
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-21_005010.1
Cds size519
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7228.15409.1prot_E_fasciculatus_S2_contig7228.15409.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7228 21..3625 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842386.1217582-UTR-E_fasciculatus_S2_contig7228:2..201696842386.1217582-UTR-E_fasciculatus_S2_contig7228:2..20Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig7228 3..20 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842386.1353796-CDS-E_fasciculatus_S2_contig7228:20..371696842386.1353796-CDS-E_fasciculatus_S2_contig7228:20..37Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7228 21..37 +
1696842386.1459875-CDS-E_fasciculatus_S2_contig7228:761..8731696842386.1459875-CDS-E_fasciculatus_S2_contig7228:761..873Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7228 762..873 +
1696842386.1578596-CDS-E_fasciculatus_S2_contig7228:1180..12651696842386.1578596-CDS-E_fasciculatus_S2_contig7228:1180..1265Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7228 1181..1265 +
1696842386.173737-CDS-E_fasciculatus_S2_contig7228:1729..17771696842386.173737-CDS-E_fasciculatus_S2_contig7228:1729..1777Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7228 1730..1777 +
1696842386.185365-CDS-E_fasciculatus_S2_contig7228:2195..23001696842386.185365-CDS-E_fasciculatus_S2_contig7228:2195..2300Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7228 2196..2300 +
1696842386.1954768-CDS-E_fasciculatus_S2_contig7228:2811..28901696842386.1954768-CDS-E_fasciculatus_S2_contig7228:2811..2890Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7228 2812..2890 +
1696842386.2062101-CDS-E_fasciculatus_S2_contig7228:3552..36251696842386.2062101-CDS-E_fasciculatus_S2_contig7228:3552..3625Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7228 3553..3625 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7228.15409.1

>prot_E_fasciculatus_S2_contig7228.15409.1 ID=prot_E_fasciculatus_S2_contig7228.15409.1|Name=mRNA_E_fasciculatus_S2_contig7228.15409.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=173bp
MKDATRANVSIPDLHTLHHRIRAIKTELPRLAKDATEIEGERKETEIALN
TALIENYNVMVGLYARLGVAPDPEWVATAAGVESFLPAPRDSGALSESFV
SDGDEGEGIRSAVEEDAAQASTVPLHSGNPDLSASRVEERVVEQSPSVIF
EEDFLAIHANTRGRSKLQDVRKV
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mRNA from alignment at E_fasciculatus_S2_contig7228:3..3625+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7228.15409.1 ID=mRNA_E_fasciculatus_S2_contig7228.15409.1|Name=mRNA_E_fasciculatus_S2_contig7228.15409.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=3623bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7228:3..3625+ (Ectocarpus fasciculatus EfasUO2)
CACCAGCTGGACTCGCGGATGAAGGATGCTACGAGGTACTACATTACTGC
TGCTGTCAGCATGCCATCGTTGTGCTTGATGTGTCCTGTGTTGTTCACCA
GTAAGGTTGATGGTCCACGGCAGCGTTACGTCTAGTAACATAGTGTAGCG
TGTTGGCGTGGGATGTCATCAATCGTCGTAGAAGTCAAGGTCTGTGCGAT
GAATACTTACCTTGCTGGATTTATGCATAGGACAGACACTCCTCGTCTAC
GAAACACACACTTTATAACACAGACTTTGGTACCTTGATACCTGTTCCAT
GTTGACTATTTGTACACACTGTGTAGGCGAACAAATGTCTTGGTGTTTTC
GATGCTATTTTGTGGTGAATCCAGATGCCGAACAGAGATGCTGCTGGAAC
AGAGCAATCGCCGATGCGGCGGAATAACTGCCGGGAGGCCATGCTGCCGC
CATGCTATGTATTGAAAACTGCACTTTCCTTGGCACCTGTCAAGTGCTCC
GTTTGATACAGCATCTAGGTGTTGCTCTTGTGGGTATTGCCGGTGTTTTC
TCACCGCCAGTAGTATAGAAGTATTCAAGAATATTGTGACACGTTGAATT
CTATGTCGAAATTTGATGGATAAAGTTATCGTATCGGCTACGAGGCTAAT
ACTCGATTTTTAACGTTTATTAGCCATGGGTCGCGAACGTGGTTCCAATT
TTGAGTCAACCTCAGGAACAAACGCTCACACCCACACGGCCGCGTTTTTG
TTCCAACAGAGCCAACGTCTCCATCCCCGACCTGCACACGCTCCACCACC
GCATCCGAGCGATCAAGACGGAGCTGCCGCGGCTAGCCAAAGACGCCACG
GAAATAGAGGGGGAGAGAAAGGTGATAGATACACTTTGTCCGGCAGTACG
CCAGGAGGGACATTTTCTTCTGTCCGATAGAGTGCGGGCGGTCGCTGTTG
TGCACTTTGAACCGCTTGGTACTCGAAGTAGGGAATCAGAATGGCACAAC
TACCGCACTATATGTAGCGGGTTTGTGACCGTAGCCTTTGCATGCCCAGG
AGATCGAAGCCCATTGCCCCGCACAAGCTAATGGGGTTCGTAACCGTGGT
CGAATTACTTAGCACCCGCAGAGGCCCCAAGCGACTTGCTACCTTGTGTT
TTCCTCTTTGCCCATTTCGCCTGCGCAGGAGACAGAGATTGCCTTGAACA
CGGCCTTGATCGAGAACTACAACGTCATGGTGGGGCTCTACGCGCGCCTC
GGCGTTGCACCAGGTACAACATGATGGCGGACTCAGACCATCCACGGTAG
CCGTTCTGCGTGTTACCGTTGTTTGTCGATGTCGGTAATGTTGCGGTCAC
GTATCTTGTTGCTGTTGTTGCCCCGGCTTGTTGTGGACGAGGAACCACCG
CCCTCTTCGTTTCCCCCACCTCGCACGCTGCTGGATTTTCCCGCGGAATC
AACCCTTCGTGATGCCCTGAGACGGGCAGTTGGCCCAACTATCAGTCACC
CCGTAATTATGCCGCGTACTGGAGATGTGCTTGCTCCACGTCCGATGTTG
TTTTGGTAGCTTCTACGTCGCCTGCTTGCAGCAATTAGCGGTTCTGCATC
ACCAGCTTTTATTTCCGGTCGCATGGTTCTGGTGGCACTGGCTAAAACCG
CAACCATTTTTAGCGCCGCATGACACACAAACACCCATGCTGCTTGGGAC
CTCTTGCTCCGCTACTGTCTTGGCCAGATCCCGAGTGGGTCGCGACGGCG
GCCGGCGTTGAAAGCTTCTTGCCCGGTAAGTGGTGAAGCGGCATTACGCT
GGCGGCATGATCTCCTCCCTCTCCCTTTAGCCCACCGCACGGAAACCGAG
ACCTCTCTATCCCGCTGGTGCTTTTTGCGCGTGCTTGTGTTGACAGTCTC
GTGGGGGACATGATTCGCATCTTCGAAACCGTTTACACCTTTTTAAGGGA
GGGAGAGGGACGCGTGAAAATCCTAAGGGTCTACCTCGTATTTCAATGGA
ACAGTTTATTGTTTCGACTCGGAAGCAAGGGGAGGTTGGCTGTTGAAGGC
CGTCGTTCCTTCTCGGGAGAATAGATTGAAACATTTGTTGCTGCTCACGT
TTCTTCCTCCACTCGTATGCATAAAGGTCGACCATATGCGGCCTCCTCTC
TAACATGTACTGCTGTAACGCGGGATGTTCTTCTCCATGGCAGCGCCACG
AGATAGCGGTGCCTTGTCCGAGAGCTTCGTTTCGGATGGCGATGAGGGGG
AGGGGATTAGGTCGGCGGTTGAGGAGGACGCTGCTCAAGCTTCGACTGGT
ATGTTCGTCAGTAGATGATGCCCTATCTCGCCGCAAAAGCATTCCTCCTT
TCGTGATAACATGCATTATATTTTTCTGCTGATGGCATGGCTCGTGATCA
ACCCAATGACACTTCTTTCTGGCTTGGGTGCTCGCTGAGGGTGAGCTGAC
GTGCTCTCGATCTCGGTGCAGATGTTGTCACTTCTTCCGCAGACAGGGCG
TAGGCGCCGCCGTTAGATCGGCTTGTGTTTGCAATGAACCAGAACAGTTG
TGTCTCCTCGTATTGGCGCGCTCGGATCGCTCATTGATTGTCGTTACAAG
AAGCCCGAACTTGGCCAACAGCAGGAGATAGCGTGTTTCTCGGCAAGCGG
CCTAGGGTTGTTCGTTACTTCTGCTGTAACCTGTTTGACAGTCAAGGTGT
TGGGGGTCAATAGCGCCATTTTTTGTTGGGCCGCTTCTTTAACTGCTGTG
GATCGGAACCCCTTCCATCACGGGGATGTACTGCTGGTTCGATTTTGTTA
CGATTTCAGTGCCGCTGCACTCGGGCAATCCGGACTTGTCGGCGAGCCGC
GTGGAGGAGAGGGTCGTCGAGCAGTCGCCCTCGGTGATGTGAGCATTCCC
CTTTACCTTTCCGCAGCGTTCGTTCTCTCGTCTTGTGTTGTTGCTTGTTA
GAGCGCCTGCAGCATAGGTCTACCTTAGATGCGCGAGTTCTTGGCAGTAC
TGCTGTGCCGGGGCTACCGCCGGCGAAGGTTGGATTCAGGGTAGTGGTAG
TTTCTTGGCGATGAGCCGTTGTGACACGCGATGACGACAGCGCCGTTCCG
TTGTTTCCCCCTGCATCGCGTGGTATATCGTATCGTATTGTGTTGTATTG
CCGAAGCACACAATGAAACTGTAACCACCACATCCACTCGTCGAGTCGCC
TGAAACAAGCGGTTGGTAGGAATCTATGATGGCGTGTTGCTGTTAGAGCG
CCATGAGGGGTCCAGAACCCCCGTAAGATTCTTCCTTGCCATCGACCCCA
GCACGACTTGGTGCTTGCCCGACCAGATTCGAGTATGGCCATACCACTCT
TACCATCATCTTTGGTCCAAGTGGGAGTCACGCTTCGTTTTCTCCCTTAC
TCTGTTGTAGCCCCCATGTAGCGTCGCTGCCGGATGCCCTCTGATGCGCT
CAAATATTTGTTCATTTATTACGCACACGGTCCCTGTCCGTAGAGATAGC
AACCTTCCTGAAAACTTTAGACAACCTTGTTGCATTTTGTTGTTCGTCAG
TTTCGAAGAAGACTTCCTGGCGATCCACGCTAACACCCGGGGGCGGTCGA
AGCTGCAAGACGTACGCAAGGTG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7228:3..3625+

>mRNA_E_fasciculatus_S2_contig7228.15409.1 ID=mRNA_E_fasciculatus_S2_contig7228.15409.1|Name=mRNA_E_fasciculatus_S2_contig7228.15409.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=519bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7228:3..3625+ (Ectocarpus fasciculatus EfasUO2)
ATGAAGGATGCTACGAGAGCCAACGTCTCCATCCCCGACCTGCACACGCT
CCACCACCGCATCCGAGCGATCAAGACGGAGCTGCCGCGGCTAGCCAAAG
ACGCCACGGAAATAGAGGGGGAGAGAAAGGAGACAGAGATTGCCTTGAAC
ACGGCCTTGATCGAGAACTACAACGTCATGGTGGGGCTCTACGCGCGCCT
CGGCGTTGCACCAGATCCCGAGTGGGTCGCGACGGCGGCCGGCGTTGAAA
GCTTCTTGCCCGCGCCACGAGATAGCGGTGCCTTGTCCGAGAGCTTCGTT
TCGGATGGCGATGAGGGGGAGGGGATTAGGTCGGCGGTTGAGGAGGACGC
TGCTCAAGCTTCGACTGTGCCGCTGCACTCGGGCAATCCGGACTTGTCGG
CGAGCCGCGTGGAGGAGAGGGTCGTCGAGCAGTCGCCCTCGGTGATTTTC
GAAGAAGACTTCCTGGCGATCCACGCTAACACCCGGGGGCGGTCGAAGCT
GCAAGACGTACGCAAGGTG
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