mRNA_E_fasciculatus_S2_contig7227.15408.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7227.15408.1
Unique NamemRNA_E_fasciculatus_S2_contig7227.15408.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig7227.15408.1 vs.
Match: Trafficking (protein particle complex subunit n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQV7_ECTSI)

HSP 1 Score: 375 bits (963), Expect = 7.710e-129
Identity = 199/210 (94.76%), Postives = 200/210 (95.24%), Query Frame = 3 
Query:  387 MDSAKRASAPRTHILDRQIVAAGKGGKPAEVSLSAFSFLFSEMVQYFQDRVTSIADLERKLEEAGYGMGLRVLELQTFRERLQKRRVRLLPMLQWVSSNVWKASRGCGASHRALFGKTADSLERSTENEDEYMIHEREPMTNSFVSVPADLGQLNCAALVAGVIAGVLDGASFPARVSAHNVEMEKGQRDKTVFLIKFDPEVLAREARLG 1016
            MDSAKRASAPRTHILDRQIVAAGKGGKPAEVSLSAFSFLFSEMVQYFQDRVTSIADLERKLEEAGYGMGLRVLELQTFRERLQKRRVRLLPMLQWVSSNVWKA          LFGKTADSLERSTENEDEYMIHEREPMTNSFVSVPADLGQLNCAALVAGVIAGVLDGASFPARVSAHNVEMEKGQR+KTVFLIKFDPEVLAREARLG
Sbjct:    1 MDSAKRASAPRTHILDRQIVAAGKGGKPAEVSLSAFSFLFSEMVQYFQDRVTSIADLERKLEEAGYGMGLRVLELQTFRERLQKRRVRLLPMLQWVSSNVWKA----------LFGKTADSLERSTENEDEYMIHEREPMTNSFVSVPADLGQLNCAALVAGVIAGVLDGASFPARVSAHNVEMEKGQREKTVFLIKFDPEVLAREARLG 200
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7227.15408.1 vs.
Match: Trafficking (protein particle complex subunit n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TEN4_9STRA)

HSP 1 Score: 248 bits (632), Expect = 1.650e-78
Identity = 131/198 (66.16%), Postives = 157/198 (79.29%), Query Frame = 3 
Query:  423 HILDRQIVAAGKGGKPAEVSLSAFSFLFSEMVQYFQDRVTSIADLERKLEEAGYGMGLRVLELQTFRERLQKRRVRLLPMLQWVSSNVWKASRGCGASHRALFGKTADSLERSTENEDEYMIHEREPMTNSFVSVPADLGQLNCAALVAGVIAGVLDGASFPARVSAHNVEMEKGQRDKTVFLIKFDPEVLAREARLG 1016
            +ILDR +   G+G   +EVSLSAFSFLFSEMVQY+Q+RV SIADLERKLEEAGYG+G RVLEL  FRE+  +R ++L+ +LQ+VSS VWKA          LF K ADSLERSTENEDEYMIHEREP+TN FVS PAD+ QLNCAA +AG+I+GVL+GAS+PA V+AH+V +  GQR+KTVFLIKF  +VL REA L 
Sbjct:   19 NILDRPLATKGRGVGGSEVSLSAFSFLFSEMVQYYQNRVLSIADLERKLEEAGYGVGHRVLELLAFREKQYRREIKLIGVLQFVSSTVWKA----------LFNKVADSLERSTENEDEYMIHEREPITNVFVSAPADISQLNCAAYIAGIISGVLNGASYPAGVTAHHVAIGDGQREKTVFLIKFRQDVLRREAALS 206
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7227.15408.1 vs.
Match: Trafficking (protein particle complex subunit n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1NSM5_HETAK)

HSP 1 Score: 241 bits (615), Expect = 3.350e-76
Identity = 133/199 (66.83%), Postives = 154/199 (77.39%), Query Frame = 3 
Query:  423 HILDRQIVAAGKGGKPAEVSLSAFSFLFSEMVQYFQDRVTSIADLERKLEEAGYGMGLRVLELQTFRERLQKRRVRLLPMLQWVSSNVWKASRGCGASHRALFGKTADSLERSTENEDEYMIHEREPMTNSFVSVPADLGQLNCAALVAGVIAGVLDGASFPARVSAHNVEMEKG-QRDKTVFLIKFDPEVLAREARLG 1016
            +ILDR +    K     EVSLSAFSFLFSEMVQY Q+RV SI+DLE++LEE GY +GLRVLEL   RER Q+RRVRLLP LQ+VS+NVWK           LFGK ADSLERSTENEDEYMIHE EP+ N+F+SVP DLG LNCAA  AGV+AG LDGASFPARV+AH V +E G +R+KTVFL+KFD EV+ RE +LG
Sbjct:    6 NILDRPVPKINK-----EVSLSAFSFLFSEMVQYNQNRVMSISDLEKRLEEVGYRVGLRVLELLGHRERAQRRRVRLLPTLQFVSTNVWKY----------LFGKQADSLERSTENEDEYMIHEAEPLPNAFISVPPDLGHLNCAAFTAGVVAGALDGASFPARVTAHGVAVEGGPRREKTVFLVKFDREVVDREIKLG 189
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BLAST of mRNA_E_fasciculatus_S2_contig7227.15408.1 vs.
Match: Transport (protein particle component n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAJ0_9STRA)

HSP 1 Score: 228 bits (580), Expect = 2.570e-70
Identity = 133/235 (56.60%), Postives = 155/235 (65.96%), Query Frame = 3 
Query:  417 RTHILDRQIVAAGK-------------------------GGKPAEVSLSAFSFLFSEMVQYFQDRVTSIADLERKLEEAGYGMGLRVLELQTFRER-LQKRRVRLLPMLQWVSSNVWKASRGCGASHRALFGKTADSLERSTENEDEYMIHEREPMTNSFVSVPADLGQLNCAALVAGVIAGVLDGASFPARVSAHNVEMEK---------GQRDKTVFLIKFDPEVLAREARLG 1016
            R HILDR+I   G                          GG+  EVSLSAFSFL SEMVQ+ Q RVTSI  LER+LEEAGY +GLRVLELQ FR++ + KR+ RLL  LQWVS+++W          RALFGKTADSLERSTEN DEYMIHE +P+TN FVSVP DLGQLNCAA +AG+IAG LDGA FPA V+AH +E+           G R KTVFL+KF  EV+ REA+L 
Sbjct:    7 RLHILDRKIAVPGSSYAYPTTRDTRVGIVSASSNAYAAAGGRTTEVSLSAFSFLLSEMVQHVQARVTSIDALERRLEEAGYAVGLRVLELQQFRDKSVGKRKTRLLQALQWVSADMW----------RALFGKTADSLERSTENADEYMIHELQPITNVFVSVPPDLGQLNCAAYIAGIIAGALDGACFPATVTAHTIELAGQEANITAAGGPRCKTVFLVKFSEEVMRREAQLA 231
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BLAST of mRNA_E_fasciculatus_S2_contig7227.15408.1 vs.
Match: Trafficking (protein particle complex subunit n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CHI7_PYTIN)

HSP 1 Score: 226 bits (575), Expect = 4.970e-70
Identity = 125/209 (59.81%), Postives = 153/209 (73.21%), Query Frame = 3 
Query:  387 MDSAKRASAPRT---HILDRQIVAAGKGGKPAEVSLSAFSFLFSEMVQYFQDRVTSIADLERKLEEAGYGMGLRVLELQTFRERLQKRRVRLLPMLQWVSSNVWKASRGCGASHRALFGKTADSLERSTENEDEYMIHEREPMTNSFVSVPADLGQLNCAALVAGVIAGVLDGASFPARVSAHNVEMEKGQRDKTVFLIKFDPEVLARE 1004
            MD A+R+    T   HILDR + + GKG    EVSLSAF+FLFSEMVQYFQ RV +I DLE +L++AG+G+G+RVLEL  FRE+  +R  RL+ MLQ++ S  W          RALFGK AD+LERSTENEDEYMIHE EP+TN F+SVP DLGQL+CAA +AG+I G+L    FPA+V+AH VE   GQRDKTVFL+KFD  V+ RE
Sbjct:    1 MDPARRSGLGATTKLHILDRPL-SRGKG----EVSLSAFAFLFSEMVQYFQGRVQNITDLETRLDDAGFGVGVRVLELLCFREKSGRRETRLINMLQFIVSTCW----------RALFGKAADALERSTENEDEYMIHELEPLTNKFISVPQDLGQLDCAAFIAGMIRGILTSGGFPAQVTAHAVETGAGQRDKTVFLVKFDEVVIRRE 194
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7227.15408.1 vs.
Match: Trafficking (protein particle complex subunit n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XYF3_9STRA)

HSP 1 Score: 224 bits (571), Expect = 1.930e-69
Identity = 121/201 (60.20%), Postives = 149/201 (74.13%), Query Frame = 3 
Query:  411 APRTHILDRQIVAAGKGGKPAEVSLSAFSFLFSEMVQYFQDRVTSIADLERKLEEAGYGMGLRVLELQTFRERLQKRRVRLLPMLQWVSSNVWKASRGCGASHRALFGKTADSLERSTENEDEYMIHEREPMTNSFVSVPADLGQLNCAALVAGVIAGVLDGASFPARVSAHNVEMEKGQRDKTVFLIKFDPEVLAREARL 1013
            A + HILDR +      GK +EVSLSAF+FLFSEMVQYFQ RV +I+DLE +L++AG+G+G+RV+EL   RE+  +R  RL+ MLQ++ S  WKA          LFGK AD+LERSTENEDEYMIHE EP+TN F+SVP DLGQL+CAA +AGV+ GVL  + FPA+VSAH VE   GQRDKTVFL+KFD  V+ RE  L
Sbjct:   11 ATKLHILDRPL----SRGK-SEVSLSAFAFLFSEMVQYFQSRVQNISDLESRLDDAGFGVGVRVIELLCHREKPGRRETRLINMLQFIVSTCWKA----------LFGKPADALERSTENEDEYMIHELEPLTNKFISVPPDLGQLDCAAYIAGVVRGVLTSSGFPAQVSAHAVEAATGQRDKTVFLVKFDESVMRRERTL 196
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7227.15408.1 vs.
Match: Uncharacterized (protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FTE9_PYTOL)

HSP 1 Score: 216 bits (549), Expect = 4.150e-66
Identity = 117/194 (60.31%), Postives = 143/194 (73.71%), Query Frame = 3 
Query:  423 HILDRQIVAAGKGGKPAEVSLSAFSFLFSEMVQYFQDRVTSIADLERKLEEAGYGMGLRVLELQTFRERLQKRRVRLLPMLQWVSSNVWKASRGCGASHRALFGKTADSLERSTENEDEYMIHEREPMTNSFVSVPADLGQLNCAALVAGVIAGVLDGASFPARVSAHNVEMEKGQRDKTVFLIKFDPEVLARE 1004
            HILDR + + GK     EVSLSAF+FLFSEMVQYFQ RV +I DLE +L++AG+G+G+R+ EL   RE+  +R  RL+ MLQ+V S  WKA          LFGK AD+LERSTENEDEYMIHE EP+TN F+SVP DLGQL+CAA +AG+I G+L    FPA+V+AH VE   GQRDKTVFL+KFD  V+ RE
Sbjct:   16 HILDRPL-SRGKN----EVSLSAFAFLFSEMVQYFQGRVQNINDLETRLDDAGFGVGVRIQELLCQREKAGRRETRLINMLQFVVSTCWKA----------LFGKAADALERSTENEDEYMIHEVEPLTNKFISVPPDLGQLDCAAYIAGMIRGILTSGGFPAQVTAHAVEAGNGQRDKTVFLVKFDEVVMRRE 194
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7227.15408.1 vs.
Match: Uncharacterized (protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BVJ4_HYAAE)

HSP 1 Score: 214 bits (545), Expect = 2.990e-64
Identity = 117/206 (56.80%), Postives = 149/206 (72.33%), Query Frame = 3 
Query:  387 MDSAKRASAPRTHILDRQIVAAGKGGKPAEVSLSAFSFLFSEMVQYFQDRVTSIADLERKLEEAGYGMGLRVLELQTFRERLQKRRVRLLPMLQWVSSNVWKASRGCGASHRALFGKTADSLERSTENEDEYMIHEREPMTNSFVSVPADLGQLNCAALVAGVIAGVLDGASFPARVSAHNVEMEKGQRDKTVFLIKFDPEVLARE 1004
            M+  +  S    HILDR +      GK +EVSLS FSFLFSEMVQYFQ RV +I+DLE +L+ AG+G+G+RVLE+   RE+  +R +RLL MLQ++ SN WKA          LFGK AD+LERSTENE+EYMIHE EP+TN FVSVP DLGQL+CAA +AG++ G+L  + F A V+AH VE+  GQR+KTVFL+KF+  V+ RE
Sbjct:   96 MEGGRGVSTTNLHILDRPL----SRGK-SEVSLSVFSFLFSEMVQYFQGRVQNISDLENRLDIAGFGVGVRVLEILGHREKSGRREIRLLAMLQFIVSNCWKA----------LFGKAADALERSTENENEYMIHELEPLTNKFVSVPPDLGQLDCAAYIAGIVRGILCSSGFLADVTAHTVEVPGGQRNKTVFLVKFNESVIHRE 286
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BLAST of mRNA_E_fasciculatus_S2_contig7227.15408.1 vs.
Match: Trafficking (protein particle complex subunit n=26 Tax=Peronosporaceae TaxID=4777 RepID=H3G9X2_PHYRM)

HSP 1 Score: 209 bits (532), Expect = 9.910e-64
Identity = 109/178 (61.24%), Postives = 135/178 (75.84%), Query Frame = 3 
Query:  471 AEVSLSAFSFLFSEMVQYFQDRVTSIADLERKLEEAGYGMGLRVLELQTFRERLQKRRVRLLPMLQWVSSNVWKASRGCGASHRALFGKTADSLERSTENEDEYMIHEREPMTNSFVSVPADLGQLNCAALVAGVIAGVLDGASFPARVSAHNVEMEKGQRDKTVFLIKFDPEVLARE 1004
            +EVSLSAFSFLFSEMVQYFQ RV +I+DLE +L+ AG+G+G+RV+EL   RE+  +R  RLL MLQ++ S  WKA          LFGK AD+LERSTENE EYMIHE EP+TN FVSVP DLGQL+CAA +AG++ G+L  + + A V+AH VE+  GQRDKTVFL+KFD  V+ RE
Sbjct:   14 SEVSLSAFSFLFSEMVQYFQGRVQNISDLENRLDGAGFGVGVRVVELLCHREKSGRRETRLLAMLQFIVSTCWKA----------LFGKAADALERSTENEYEYMIHELEPLTNKFVSVPPDLGQLDCAAYIAGIVRGILCSSGYLAEVTAHTVEVPGGQRDKTVFLVKFDESVIRRE 181
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7227.15408.1 vs.
Match: Trafficking (protein particle complex subunit n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3XAK0_GLOUD)

HSP 1 Score: 210 bits (534), Expect = 1.180e-63
Identity = 121/221 (54.75%), Postives = 150/221 (67.87%), Query Frame = 3 
Query:  372 RRSTTMDSAKRASAPRTHILDR---------QIVAAGKGGKPAEVSLSAFSFLFSEMVQYFQDRVTSIADLERKLEEAGYGMGLRVLELQTFRERLQKRRVRLLPMLQWVSSNVWKASRGCGASHRALFGKTADSLERSTENEDEYMIHEREPMTNSFVSVPADLGQLNCAALVAGVIAGVLDGASFPARVSAHNVEM-EKGQRDKTVFLIKFDPEVLARE 1004
            RRST + + K       HILDR          ++A  +      VSLSAFSFLFSEMVQYFQ RV +I+DLE +L++AG+G+G+RV EL   RE+  +R  RL+ +LQ++ S  WKA          LFGK AD+LERSTENEDEYMIHE EP+TN F+SVP DLGQL+CAA +AG+I GVL  + F A V+AH VE+   GQRDKTVFLIKFD  V+ RE
Sbjct:    4 RRSTGLTATK------LHILDRPLSRGKNEVHVLALMRHTHTQSVSLSAFSFLFSEMVQYFQGRVQNISDLENRLDDAGFGVGVRVGELLCHREKSGRRETRLISILQFIVSTCWKA----------LFGKAADALERSTENEDEYMIHELEPLTNKFISVPPDLGQLDCAAYIAGIIRGVLTSSGFTANVTAHTVEVGTPGQRDKTVFLIKFDERVMRRE 208
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7227.15408.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Trafficking7.710e-12994.76protein particle complex subunit n=2 Tax=Ectocarpu... [more]
Trafficking1.650e-7866.16protein particle complex subunit n=2 Tax=Monodopsi... [more]
Trafficking3.350e-7666.83protein particle complex subunit n=1 Tax=Heterosig... [more]
Transport2.570e-7056.60protein particle component n=1 Tax=Tribonema minus... [more]
Trafficking4.970e-7059.81protein particle complex subunit n=1 Tax=Pythium i... [more]
Trafficking1.930e-6960.20protein particle complex subunit n=1 Tax=Pythium b... [more]
Uncharacterized4.150e-6660.31protein n=1 Tax=Pythium oligandrum TaxID=41045 Rep... [more]
Uncharacterized2.990e-6456.80protein n=1 Tax=Hyaloperonospora arabidopsidis (st... [more]
Trafficking9.910e-6461.24protein particle complex subunit n=26 Tax=Peronosp... [more]
Trafficking1.180e-6354.75protein particle complex subunit n=1 Tax=Globispor... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7227contigE_fasciculatus_S2_contig7227:1676..4898 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score378.3
Seed ortholog evalue2.4e-102
Seed eggNOG ortholog2880.D7FQV7
Preferred nameTRAPPC5
Model size1019
KEGG koko:K02332,ko:K10840,ko:K20280
KEGG Pathwayko01100,ko03420,ko04139,map01100,map03420,map04139
KEGG ModuleM00294
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005085,GO:0005088,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005793,GO:0005794,GO:0005829,GO:0006810,GO:0006886,GO:0006888,GO:0006900,GO:0006901,GO:0006903,GO:0006996,GO:0008104,GO:0008150,GO:0009987,GO:0012505,GO:0015031,GO:0015833,GO:0016043,GO:0016050,GO:0016192,GO:0017016,GO:0017112,GO:0017137,GO:0019899,GO:0022607,GO:0030008,GO:0031267,GO:0031410,GO:0031982,GO:0032991,GO:0033036,GO:0034613,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044431,GO:0044433,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046907,GO:0048193,GO:0048194,GO:0048199,GO:0048207,GO:0048208,GO:0051020,GO:0051179,GO:0051234,GO:0051640,GO:0051641,GO:0051648,GO:0051649,GO:0051650,GO:0051656,GO:0061024,GO:0065003,GO:0065007,GO:0065009,GO:0070727,GO:0071702,GO:0071705,GO:0071840,GO:0090114,GO:0097708,GO:0098772,GO:0099023,GO:1990070,GO:1990071,GO:1990072
Exons6
EggNOG free text desc.Golgi vesicle transport
EggNOG OGsCOG5128@1,KOG3315@2759
Ec32 ortholog descriptionTransport protein particle component (TRAPP)/ SPP30-like
Ec32 orthologEc-02_003050.1
EC2.7.7.7
Cds size633
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03029,ko03032,ko03036,ko03400,ko04131
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7227.15408.1prot_E_fasciculatus_S2_contig7227.15408.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7227 2062..4898 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842386.0189066-UTR-E_fasciculatus_S2_contig7227:1675..20611696842386.0189066-UTR-E_fasciculatus_S2_contig7227:1675..2061Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig7227 1676..2061 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842386.033303-CDS-E_fasciculatus_S2_contig7227:2061..21511696842386.033303-CDS-E_fasciculatus_S2_contig7227:2061..2151Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7227 2062..2151 +
1696842386.0462608-CDS-E_fasciculatus_S2_contig7227:2675..27641696842386.0462608-CDS-E_fasciculatus_S2_contig7227:2675..2764Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7227 2676..2764 +
1696842386.0568616-CDS-E_fasciculatus_S2_contig7227:3239..33961696842386.0568616-CDS-E_fasciculatus_S2_contig7227:3239..3396Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7227 3240..3396 +
1696842386.0656695-CDS-E_fasciculatus_S2_contig7227:3900..39781696842386.0656695-CDS-E_fasciculatus_S2_contig7227:3900..3978Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7227 3901..3978 +
1696842386.0763924-CDS-E_fasciculatus_S2_contig7227:4274..43791696842386.0763924-CDS-E_fasciculatus_S2_contig7227:4274..4379Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7227 4275..4379 +
1696842386.0867138-CDS-E_fasciculatus_S2_contig7227:4784..48981696842386.0867138-CDS-E_fasciculatus_S2_contig7227:4784..4898Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7227 4785..4898 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7227.15408.1

>prot_E_fasciculatus_S2_contig7227.15408.1 ID=prot_E_fasciculatus_S2_contig7227.15408.1|Name=mRNA_E_fasciculatus_S2_contig7227.15408.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=211bp
MDSAKRASAPRTHILDRQIVAAGKGGKPAEVSLSAFSFLFSEMVQYFQDR
VTSIADLERKLEEAGYGMGLRVLELQTFRERLQKRRVRLLPMLQWVSSNV
WKASRGCGASHRALFGKTADSLERSTENEDEYMIHEREPMTNSFVSVPAD
LGQLNCAALVAGVIAGVLDGASFPARVSAHNVEMEKGQRDKTVFLIKFDP
EVLAREARLG*
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mRNA from alignment at E_fasciculatus_S2_contig7227:1676..4898+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7227.15408.1 ID=mRNA_E_fasciculatus_S2_contig7227.15408.1|Name=mRNA_E_fasciculatus_S2_contig7227.15408.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=3223bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7227:1676..4898+ (Ectocarpus fasciculatus EfasUO2)
CAGGCAGGTGGGCACCTTTTACTTGCTGCTGGGGCGCGAACGTCACAACG
ACACGCGTACCATCCCAACCATACGGCGACTCTATTTCCAGCGAGCGTAG
TCGTGGTGAAACGAATCTGGCAAGGGCCGGACCTGCCATCACACTGCTGT
TGCTTGGCATTGGTACACCGGACCGCGCCCCCCGACGAACAACGCAACAC
GCAACGGCGCCACCTAGCGGCTCTCCAGCAGCAGCGGCAGAGACAGAGAT
TCCGGGAACTATCGAGCGTAGAGCTGCTTCATCTTTAATTGTGTGGGATA
GGGCTGAAGTAACCAGCTTCTCTGTGATTCCCGCCAACTCTTGAAGCTCC
TCTCTGTCAGCATAGGCGACCAGGAGATCAACTACGATGGATTCGGCCAA
AAGAGCAAGTGCTCCGCGAACACATATCCTGGATCGCCAGATCGTAGCGG
CAGGGAAGGGCGGAAAGCCGGCGGAGGTGCGCCATGAGTGGTATACACAT
GATGACAATTGCTGAATTTGTTCTTCCTGCTGTTTGGTACTATTTGCTGT
AGTTCTTCGAGGGTTGGCGAGTCGGTGAAGGCCTGGCGTGAGTTTAGGGT
TTGGATGCGACAGGTGGCGCAATTCCCCCGTTGATCTCACCTCTCTGGCC
ATGCACGACTGTTGGCTCTTGGCCGGGCGGTGCATGTGTGTGTGTGCGTA
CGTAGTTGTCGTTCGAGCTCATCTCTCGGCCCGCGGTAAGCACACAGCAG
ACGGATGGAATTCTTGACAGCTTCGCAATCCGCATCAACAGATCCTGAAA
CCACCACGCAACGGCGCTGCTTGTGCATACACGACCCATCCATGCATGAT
GAGCACCCCTCCACAACACTTTCGCTAGCTCGCCCAGTGCAACGACGTTG
CGTTGTTCGGACCCCAACCTCTTAGGCACCTACGTAGACTTCGCAAGATC
ATCCAACGGATTTGGAACCAACTGCAAGCGTTTTTTCGCCTGAAATACAG
GTGAGCCTGAGCGCCTTCAGCTTCCTCTTCTCGGAGATGGTTCAGTACTT
CCAAGATAGAGTCACGAGCATCGCCGACCTGGAGCGCAAGTGAGACGTGA
CCCTTACCGACCGACCTGATCACCTACGAGTTCCTGGAGTTGTTATCACC
GACCGCATATTGGGCTGAGCCAACCAAAGAGGATTGGCGGCGGGGGAGGG
GGGGGTGAACGCTATACAGGCGACGAGTACCTCTACGGTAATAGCGGCCG
ACTCAACGAACGTCAACAGCAGTTGTCTTCATGTGTGGCAACTTGATGGA
AGAGTTGAGGGGATGGTTCCCGCGGGGGCCGGCGGGTGCCCGGTGGAGAG
CTAGTTCATTGCCCCGGAGTTGGTTCCCTCGCAACGCTCCCATGAAGACG
CGTCTAAGCCCGCGCGTGTCGCTTCGGTCCACCCACCAGAGAGCTTGAAC
CCCCGACCTTTTTCGTGGCGTGTGGCGCAGAACAAGTCCGAATGCCTTCG
GACAACATGCCCAATCTCCACCGCTATGAATGTTTTCTTCTTGTGGTTGG
TCGATTGCGTGCAGGCTTGAGGAGGCAGGGTACGGCATGGGCCTCCGCGT
GCTGGAACTGCAGACTTTCCGCGAGAGACTGCAGAAGCGAAGAGTCCGCC
TCTTGCCCATGCTGCAATGGGTTTCCTCCAATGTTTGGAAGGCGAGTCGC
GGTTGTGGGGCCTCTCACCGTGTTGGGTCGCCTAAGTCATCCCCGGATCC
ACAAGCCCCTGGTATTGTGCTGTCTGCTCTCGGCGAATTAGCGCGCGTCC
TACCTACAGAGAGGTGGCGGTGGATTTTCCCCCTACGCTGTGTGGGTAGC
ACACGACTTTGTTGTCGCCGATTCCCGTACCAAGTACATGTAGGCCAATC
CGCCCGCACCTTCGCTGCTTTCATGCGTATTTCTCTTCACCGACACGTCA
CATTCCTCGCCGGTCCCACCAAAATAATGTACAACTCTGTCTCACGGTAT
GCTTGTGGCATCAGCGATTGCGGCGAAGAGACAACGGGAGACGCGTTTTG
ATGCCTCGCGGTGCGCGTCCCCGGACACCTCACTCTCCGCTGAATGAGGG
CGTTTCGGCCGACCGAGGTTGTAGTGTTGCTCTTACAACTGCGGTGTTAG
TTGCTGTCACATCCGCAGCGCGGACATGATCCTACCGTTTGGAACCTCAC
TTGCTGAACATGCACGTTTTCTCAGGCGTTGTTCGGCAAGACGGCCGATT
CTCTGGAGAGGAGTACGGAAAACGAGGACGAGTACATGATTCACGAGAGA
GAGGTAAGGCAAAAACGTTTTGGATACCATATGCATGTTCGCACATCATA
CAGTATTTCTGATTGTTCCTACTTCGTCGTGGCGCCTGCCTCGCTGCTTT
GACGTTTTTTTCATCACAACGCCATCACACGGTTTGCTTTTCCGCAAGCA
CACCCCCATACGTGGGAAACAAATGCTCCGTCCTCGCGAGGCCGCGTGGT
CAAATGGCCTAAGAGCTAAGGCATGCCAAACATGAATACCCCCCCCCTAT
CCCACCCCTTCGCGCTGGCCTCCTCGCTGCCCGGTGTCGTTTCCGCCAGC
CCATGACGAACAGTTTCGTGAGCGTGCCGGCCGACCTGGGGCAGTTGAAT
TGCGCCGCCCTCGTGGCGGGTGTGATTGCCGGAGTCTTAGACGGAGCCTC
GTTCGTGAGTGCCGCATGCGGTCTCGGCTTCTAGACTTGTCATTCAGCGG
CGTCCCGTTGTAGTCGGTTTTCCTCCGATCCTGATTTGGGGCGATTGTAC
CGAGTCTTGGGAGGCCCATGCCTTTTTCGCCCCGTCTTGGGGCTCGTGTC
GAGCGCGGTGAATTTCGTTCATATAGATATACCCGTGCAATCCTGCCGCG
ATGTCTCCGTCTTTTCACCTCTGTGCAGCACCGAGAGATGTGTCTTGGAC
GCACGGGTAATTTTTCCAGTAGTCGATATTTTCATGGAACACGCGACCAC
GGTTTCCAGGAGATTCCCTCACGATCGTTGAGTGCAATCGACAGCCCTGC
CCTTACCCCCGCCCCGCCCTCCCTGTCATGCCTCTCTACCCCCGTATTGT
GATTTGTAGCCGGCACGGGTCTCCGCACACAACGTGGAAATGGAGAAAGG
ACAGCGAGACAAGACAGTATTTTTGATCAAGTTTGATCCTGAGGTTTTGG
CCAGGGAAGCCAGGTTAGGATAA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7227:1676..4898+

>mRNA_E_fasciculatus_S2_contig7227.15408.1 ID=mRNA_E_fasciculatus_S2_contig7227.15408.1|Name=mRNA_E_fasciculatus_S2_contig7227.15408.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=633bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7227:1676..4898+ (Ectocarpus fasciculatus EfasUO2)
ATGGATTCGGCCAAAAGAGCAAGTGCTCCGCGAACACATATCCTGGATCG
CCAGATCGTAGCGGCAGGGAAGGGCGGAAAGCCGGCGGAGGTGAGCCTGA
GCGCCTTCAGCTTCCTCTTCTCGGAGATGGTTCAGTACTTCCAAGATAGA
GTCACGAGCATCGCCGACCTGGAGCGCAAGCTTGAGGAGGCAGGGTACGG
CATGGGCCTCCGCGTGCTGGAACTGCAGACTTTCCGCGAGAGACTGCAGA
AGCGAAGAGTCCGCCTCTTGCCCATGCTGCAATGGGTTTCCTCCAATGTT
TGGAAGGCGAGTCGCGGTTGTGGGGCCTCTCACCGTGCGTTGTTCGGCAA
GACGGCCGATTCTCTGGAGAGGAGTACGGAAAACGAGGACGAGTACATGA
TTCACGAGAGAGAGCCCATGACGAACAGTTTCGTGAGCGTGCCGGCCGAC
CTGGGGCAGTTGAATTGCGCCGCCCTCGTGGCGGGTGTGATTGCCGGAGT
CTTAGACGGAGCCTCGTTCCCGGCACGGGTCTCCGCACACAACGTGGAAA
TGGAGAAAGGACAGCGAGACAAGACAGTATTTTTGATCAAGTTTGATCCT
GAGGTTTTGGCCAGGGAAGCCAGGTTAGGATAA
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