mRNA_E_fasciculatus_S2_contig7212.15393.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7212.15393.1
Unique NamemRNA_E_fasciculatus_S2_contig7212.15393.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
BLAST of mRNA_E_fasciculatus_S2_contig7212.15393.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812TC40_SYMMI)

HSP 1 Score: 121 bits (304), Expect = 2.720e-32
Identity = 64/137 (46.72%), Postives = 88/137 (64.23%), Query Frame = 1
Query:   13 NASLMYTTDPAMAT-KGSKALPVQGGFLLVRPDLRVYDELRAIITYVQHVVCFRQGNWRVGPGWRGSHIGYFYGGATIQGLLAYYY-NIIAPGNATEVDRCVYNHMSDSDECAERTPSAIKSVHFTQSCKKPWLCAR 417
            N SL+YTTDP MA+ KG   +PVQGGFL+++P L  Y  +  I+          +G++R    W G+ IG+F+GG TIQG+LAYYY N  A   +  +DRC YN M+D+++CA  + + IKS HFT  C+KPW C R
Sbjct:   27 NKSLIYTTDPNMASHKGEDKMPVQGGFLVIKPSLTDYRRIVDIVV---------EGDYRGSAAWGGTKIGWFWGGRTIQGVLAYYYTNQTAAWRSVRLDRCRYNTMADTEKCAATSMNDIKSAHFTV-CQKPWNCLR 153          
BLAST of mRNA_E_fasciculatus_S2_contig7212.15393.1 vs.
Match: Hypothetical (protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UJ30_9STRA)

HSP 1 Score: 124 bits (311), Expect = 2.520e-31
Identity = 66/151 (43.71%), Postives = 89/151 (58.94%), Query Frame = 1
Query:    7 ESNASLMYTTDPAMATK---------GSKALPVQGGFLLVRPDLRVYDELRAIITYVQHVVCFRQGNWRVGPG-----WRGSHIGYFYGGATIQGLLAYYYNIIAPGNATEVDRCVYNHMSDSDECAERTPSAIKSVHFTQSCKKPWLCAR 417
            E++ASL +T D  M ++         G K  P QGGFLLV P ++ YD L AII        FR+G  +  PG     W+G+ IGY++GG T+QGLL YYY + APG + EVD C YN+M D++EC       +++ HFT  C+KPW C R
Sbjct:  158 EADASLQFTYDMGMCSRCQKNATLEHGGKVPPYQGGFLLVSPSMKHYDALTAIIREGD----FREGGAKNAPGKKGIAWKGTRIGYYWGGRTVQGLLPYYYTVEAPGESLEVDMCAYNNMVDNEECQGVPVDYVQNAHFTV-CQKPWKCKR 303          
BLAST of mRNA_E_fasciculatus_S2_contig7212.15393.1 vs.
Match: Hypothetical (protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3B9M4_9EUKA)

HSP 1 Score: 118 bits (295), Expect = 1.030e-29
Identity = 65/133 (48.87%), Postives = 84/133 (63.16%), Query Frame = 1
Query:   19 SLMYTTDPAMATKGSKALPVQGGFLLVRPDLRVYDELRAIITYVQHVVCFRQGNWRVGPGWRGSHIGYFYGGATIQGLLAYYYNIIAPGNATEV-DRCVYNHM-SDSDECAERTPSAIKSVHFTQSCKKPWLC 411
            SL+YT DPAMA K + ALP QGGFLL+ P++ + +EL  II         R+GN+R G GWR S IG+ YGGAT+QGLLAYYY  +AP + + + D C YN M +    C+      + S HFT  C+KPW C
Sbjct:   64 SLVYTGDPAMAAKNAAALPAQGGFLLIAPNVTIREELLEII---------REGNFRGGGGWRDSRIGWGYGGATVQGLLAYYYKRVAPPSLSAMLDFCRYNRMLTHRFNCSGVAIDEVFSTHFTV-CQKPWTC 186          
BLAST of mRNA_E_fasciculatus_S2_contig7212.15393.1 vs.
Match: Hypothetical (protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XNK0_HETAK)

HSP 1 Score: 110 bits (275), Expect = 2.480e-26
Identity = 56/115 (48.70%), Postives = 74/115 (64.35%), Query Frame = 1
Query:   76 VQGGFLLVRPDLRVYDELRAIITYVQHVVCFRQGNWRVGPGWRGSHIGYFYGGATIQGLLAYYYNIIAPGNATEVDRCVYNHMSDSDE---CAERTPSAIKSVHFTQSCKKPWLC 411
            VQGGF+LVRP++ VY E         +V  FR G++R    W GS IG+F+GG TIQG+++YYYN +  G   EVDRC+YN+M+D+ E   C E     +K VHFT  C+KPW C
Sbjct:  166 VQGGFILVRPNIEVYKE---------YVEIFRVGDFRERGQWGGSGIGHFWGGVTIQGVVSYYYNYLHRGKGAEVDRCIYNNMADAPENGRCRETPLEQVKGVHFTV-CRKPWDC 270          
BLAST of mRNA_E_fasciculatus_S2_contig7212.15393.1 vs.
Match: Uncharacterized (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z761_9STRA)

HSP 1 Score: 111 bits (277), Expect = 6.480e-26
Identity = 64/163 (39.26%), Postives = 81/163 (49.69%), Query Frame = 1
Query:   22 LMYTTDPAMATKGSKALPVQGGFLLVRPDLRVYDELRAIITYVQHVVCFRQGNWRVGPGWRGSHIGYFYGGATIQGLLAYYYN--------------IIAPGN-------------------ATEVDRCVYNHMSDSDECAERTPSAIKSVHFTQSCKKPWLC 411
            L+YTTD  MA      +PVQGGFLL RP    +DEL  I+         ++G+W    GW  S IG+F+GG TIQGLLAYYY               +++P                     + E DRC +NHM D+ EC       + SVHFTQSC KPW+C
Sbjct:  214 LVYTTDVKMAPNAHN-MPVQGGFLLCRPSQATFDELVGIV---------KKGDWAPNVGWARSGIGFFHGGPTIQGLLAYYYRHDRTLPNRALPPPLLLSPPXXPLQXXXXXXXRFLKPTELSYEADRCAFNHMWDTPECRSYAIGDVHSVHFTQSCPKPWVC 366          
BLAST of mRNA_E_fasciculatus_S2_contig7212.15393.1 vs.
Match: Predicted (protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7G703_PHATC)

HSP 1 Score: 110 bits (274), Expect = 9.240e-26
Identity = 62/159 (38.99%), Postives = 86/159 (54.09%), Query Frame = 1
Query:    1 PTESNASLMYTTDPAMATKGSKALPVQGGFLLVRPDLRVYDELRAIITYVQHVVCFRQGNWRVGPGWRGSHIGYFYGGATIQGLLAYYYNIIAPGNATEVDRCVYNHMSDS----------------------DECAERTPSAIKSVHFTQSCKKPWLC 411
            PT  NA   +T D  M     +  PVQGGFL++RPDL VY+E RAI+          +G++R G GW G  +G F+G  T QG+++YYYN++ PG A E++RCVYN M D+                      ++C ER    I + H+T  C+KPW C
Sbjct:  195 PTSINA--FFTLDYNMVGPKKQYKPVQGGFLVMRPDLNVYEEFRAIVL---------EGDFRDGQGW-GGKVGPFHGSMTFQGIISYYYNVLHPGQAIELNRCVYNQMCDNPRTGKTVNDVVQGECRTNTETCEDCRERNLEDIVTTHYTL-CQKPWWC 340          
BLAST of mRNA_E_fasciculatus_S2_contig7212.15393.1 vs.
Match: Putative (zinc-protease albF n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ22_ECTSI)

HSP 1 Score: 107 bits (267), Expect = 1.630e-25
Identity = 58/100 (58.00%), Postives = 69/100 (69.00%), Query Frame = 1
Query:   52 TKGSKALPVQGGFLLVRPDLRVYDELRAIITYVQHVVCFRQGNWRVGPGWRGSHIGYFYGGATIQGLLAYYYNIIAPGNATEVDRCVYNHMSDSDECAER 351
            T+  + + V    L++ P     DEL A      HVV FRQG+W+VGPGWR SHIGYFYGGATIQGLLAYYYNIIAPGNATEVDR V +  + +  C +R
Sbjct:  178 TQYHRVMHVDADTLMLHP----MDELMARPRDYVHVVWFRQGDWKVGPGWRRSHIGYFYGGATIQGLLAYYYNIIAPGNATEVDR-VGSRRAPALSCGKR 272          
BLAST of mRNA_E_fasciculatus_S2_contig7212.15393.1 vs.
Match: Hypothetical (protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4T1G8_9STRA)

HSP 1 Score: 109 bits (273), Expect = 2.120e-25
Identity = 62/150 (41.33%), Postives = 85/150 (56.67%), Query Frame = 1
Query:   10 SNASLMYTTDPAMATKGSKALPVQGGFLLVRPDLRVYDELRAIITYVQHVVCFRQGNWRVGPGWRGSHIGYFYGGATIQGLLAYYYNIIAPGNATEVDRCVYNHMSDS----------------DECAERTPSAIKSVHFTQSCKKPWLC 411
            S+ +  +T D  M   G K + VQGGFL+VRP L V++E R+II          +GN+R G GW G + GYF G   IQGL AYYY+ + PG A E++RC +N M+D                 ++C+ +  S + SVHFT  C+KPWLC
Sbjct:  259 SHINAYFTRDYNMVNPGKKHVGVQGGFLVVRPSLDVFEEYRSIIL---------EGNFRPGAGWGGQYGGYF-GAQQIQGLCAYYYDHLHPGEAAELNRCYFNAMADKPIQQSSGKCRTGEDVCEDCSTKDVSDLYSVHFTL-CQKPWLC 397          
BLAST of mRNA_E_fasciculatus_S2_contig7212.15393.1 vs.
Match: Uncharacterized (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C6W8_9STRA)

HSP 1 Score: 103 bits (258), Expect = 6.840e-24
Identity = 60/130 (46.15%), Postives = 76/130 (58.46%), Query Frame = 1
Query:   22 LMYTTDPAMATKGSKALPVQGGFLLVRPDLRVYDELRAIITYVQHVVCFRQGNWRVGPGWRGSHIGYFYGGATIQGLLAYYYNIIAPGNATEVDRCVYNHMSDSDECAERTPSAIKSVHFTQSCKKPWLC 411
            L+YT D  MA+     +PVQGGFLL+RP L ++  L  I+         R+G++  G GW  S IG+F+GG TIQGLLAYYY  + P  A   D CV N+M   D+C  R P    S HFT  C+KPW C
Sbjct:  171 LVYTEDAPMASNKHN-MPVQGGFLLLRPSLEIFQTLVEIV---------RKGDF-TGDGWNKSGIGWFWGGDTIQGLLAYYYRAVKPERAFIADPCVVNNML-IDDCRTRDPLETYSYHFTL-CQKPWKC 287          
BLAST of mRNA_E_fasciculatus_S2_contig7212.15393.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCJ8_ECTSI)

HSP 1 Score: 104 bits (259), Expect = 8.340e-24
Identity = 56/137 (40.88%), Postives = 78/137 (56.93%), Query Frame = 1
Query:    7 ESNASLMYTTDPAMATKGSKALPVQGGFLLVRPDLRVYDELRAIITYVQHVVCFRQGNWRVGPGWRGSHIGYFYGGATIQGLLAYYYNIIAPGNAT--EVDRCVYNHMSDSDECAERTPSAIKSVHFTQSCKKPWLC 411
            ++  SL+YT D  M +  +  +PVQGGFL+VRPD  V+ +L  I+         ++ ++    GW GS IG F+GG  +QG+L YYY   AP       VDR VYN+M D   C     S ++S HFT +C+KPW C
Sbjct:  186 DAEESLLYTADINMGSSYTPVMPVQGGFLVVRPDPEVFQDLVQIV---------KRTSFYPSKGWGGSMIGLFWGGVNVQGILPYYYERRAPAGVLYRSVDRSVYNNMVDRPSCQAVDISQVRSAHFT-NCQKPWEC 312          
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7212.15393.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Hypothetical2.720e-3246.72protein (Fragment) n=1 Tax=Symbiodinium microadria... [more]
Hypothetical2.520e-3143.71protein n=2 Tax=Phaeomonas parva TaxID=124430 RepI... [more]
Hypothetical1.030e-2948.87protein n=1 Tax=Haptolina ericina TaxID=156174 Rep... [more]
Hypothetical2.480e-2648.70protein n=1 Tax=Heterosigma akashiwo TaxID=2829 Re... [more]
Uncharacterized6.480e-2639.26protein n=1 Tax=Tribonema minus TaxID=303371 RepID... [more]
Predicted9.240e-2638.99protein n=1 Tax=Phaeodactylum tricornutum (strain ... [more]
Putative1.630e-2558.00zinc-protease albF n=1 Tax=Ectocarpus siliculosus ... [more]
Hypothetical2.120e-2541.33protein n=1 Tax=Ditylum brightwellii TaxID=49249 R... [more]
Uncharacterized6.840e-2446.15protein n=1 Tax=Tribonema minus TaxID=303371 RepID... [more]
Uncharacterized8.340e-2440.88protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7212contigE_fasciculatus_S2_contig7212:75..1309 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score107.8
Seed ortholog evalue4e-21
Seed eggNOG ortholog2850.Phatr48402
Model size438
Hectar predicted targeting categoryother localisation
Exons4
EggNOG OGs2B6VE@1,2S0N3@2759,2XEQ5@2836
Cds size414
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842384.5423186-UTR-E_fasciculatus_S2_contig7212:74..981696842384.5423186-UTR-E_fasciculatus_S2_contig7212:74..98Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig7212 75..98 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842384.553723-CDS-E_fasciculatus_S2_contig7212:98..2121696842384.553723-CDS-E_fasciculatus_S2_contig7212:98..212Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7212 99..212 +
1696842384.5627673-CDS-E_fasciculatus_S2_contig7212:746..9131696842384.5627673-CDS-E_fasciculatus_S2_contig7212:746..913Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7212 747..913 +
1696842384.571916-CDS-E_fasciculatus_S2_contig7212:1074..11091696842384.571916-CDS-E_fasciculatus_S2_contig7212:1074..1109Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7212 1075..1109 +
1696842384.5892127-CDS-E_fasciculatus_S2_contig7212:1211..13091696842384.5892127-CDS-E_fasciculatus_S2_contig7212:1211..1309Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7212 1212..1309 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7212.15393.1prot_E_fasciculatus_S2_contig7212.15393.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7212 99..1309 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7212.15393.1

>prot_E_fasciculatus_S2_contig7212.15393.1 ID=prot_E_fasciculatus_S2_contig7212.15393.1|Name=mRNA_E_fasciculatus_S2_contig7212.15393.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=138bp
MYTTDPAMATKGSKALPVQGGFLLVRPDLRVYDELRAIITYVQHVVCFRQ
GNWRVGPGWRGSHIGYFYGGATIQGLLAYYYNIIAPGNATEVDRCVYNHM
SDSDECAERTPSAIKSVHFTQSCKKPWLCARSAVRVS*
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mRNA from alignment at E_fasciculatus_S2_contig7212:75..1309+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7212.15393.1 ID=mRNA_E_fasciculatus_S2_contig7212.15393.1|Name=mRNA_E_fasciculatus_S2_contig7212.15393.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1235bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7212:75..1309+ (Ectocarpus fasciculatus EfasUO2)
CCAACAGAGTCGAATGCAAGCCTGATGTACACGACGGACCCCGCCATGGC GACGAAAGGTTCTAAAGCGTTGCCAGTGCAGGGGGGCTTTCTCCTTGTCC GTCCGGATCTGAGGGTCTACGATGAGCTGCGGGCCATCGTACGCGAGGCG AGGCCCTAAATGATTTGCTTGCCACGCTTGGGGTGTACCCGAAGCGGCAG CAATTCCCCCGCTTGCTTTTCGTTGAGCTATTCATGCTGACGTTTGGGCT GTTCATGCTGAAGGTTGGCGGCCTCCAGAGACGTCAGGCGCACCCTGTGT TGGTTCCTCGGACCGGGGGTTTCAATAGTGTGTGGAAGGGTTATTTTGCC TAAACGTCCCCTCTCCTATCTACGTACCTGCGAACTAACTTTTCCCTCCG GGAGCCGTTGCACGAAACGACGAGTACGTGCGGTAGATGGGAAGCACCGT ACACGCGGTACGGAGTTGAAGGCTGTCCAGCGGCCGTGTACGGTGGTGCC GCACACACGTCAGTCATAGTCACGCTGGGGTTGGGTGCTCCTTCCGCCTC GCCCTTGGCATCTATCGATCTTCACCTCCCGCCCTCGTTGAGCGCAGCCG TGAAGCGAAGCCACCATGTTGCCGTTGAGCGGACTTGCTCCCTTTTATAG CAACACCCCACGACTAGACTAGATTACATATGTACAACATGTTGTCTGTT TTCGGCAGGGTAACTGGAGGGTGGGGCCGGGATGGCGCGGCAGCCATATC GGCTACTTTTACGGGGGCGCTACGATACAGGGATTGCTGGCGTACTATTA CAACATCATTGCTCCGGGAAATGCGACCGAGGTGGACAGGTGAGTGGGGG GGTTGTGCTGGCGAGGGCAATGCCCATGTTAATCTGCTTCTTGGTGTTGT CGTCGTCGTCGTTGCCACAGTATGGCAGTGTTGCGCTTGAATGCGCGTTA AACGAAGTCACCGGCGCGCGCCCCCCCCCCCCCACACCCGTACCAAAAAG GTGCGTATACAACCACATGTCGGACAGCGACGAGTGTCGCTCCGAGCGGT ACACCGTTGTCGCAACGACGGAAAATTCACCCCAAGAACAGAACGCCGAC CGGGGAGGCACGGACAGGGGGCCGACAGATGGCAGAGGCGCAGAGCGTAC GCCTTCCGCGATCAAGAGCGTACACTTCACTCAGTCCTGCAAGAAGCCAT GGCTCTGCGCTCGTTCCGCGGTAAGGGTTAGCTAG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7212:75..1309+

>mRNA_E_fasciculatus_S2_contig7212.15393.1 ID=mRNA_E_fasciculatus_S2_contig7212.15393.1|Name=mRNA_E_fasciculatus_S2_contig7212.15393.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=414bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7212:75..1309+ (Ectocarpus fasciculatus EfasUO2)
ATGTACACGACGGACCCCGCCATGGCGACGAAAGGTTCTAAAGCGTTGCC
AGTGCAGGGGGGCTTTCTCCTTGTCCGTCCGGATCTGAGGGTCTACGATG
AGCTGCGGGCCATCATTACATATGTACAACATGTTGTCTGTTTTCGGCAG
GGTAACTGGAGGGTGGGGCCGGGATGGCGCGGCAGCCATATCGGCTACTT
TTACGGGGGCGCTACGATACAGGGATTGCTGGCGTACTATTACAACATCA
TTGCTCCGGGAAATGCGACCGAGGTGGACAGGTGCGTATACAACCACATG
TCGGACAGCGACGAGTGCGCAGAGCGTACGCCTTCCGCGATCAAGAGCGT
ACACTTCACTCAGTCCTGCAAGAAGCCATGGCTCTGCGCTCGTTCCGCGG
TAAGGGTTAGCTAG
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