mRNA_E_fasciculatus_S2_contig7183.15359.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7183.15359.1
Unique NamemRNA_E_fasciculatus_S2_contig7183.15359.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig7183.15359.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGI3_9PHAE)

HSP 1 Score: 334 bits (857), Expect = 9.340e-109
Identity = 199/226 (88.05%), Postives = 202/226 (89.38%), Query Frame = 1 
Query:  172 MRMGPSMPLLGALLGAGLTATSAFVSTTPIVSSSLSTRQQ-HQPCSSGRXXXXXXXXXXXXXXXXXXXXXXXVGGEGLAELGSMVSGAVGQVHASAMGSGLGTFLLLADDPPAPPNIYGEVAQGGFFIIFSGVFSAYIIATMIRTMPIDQLEKLTAELGGGNEIADLEAQRIETTKRFKELTKDMAQAADPTMGVKPDEALSEKLSQQTAKALQTDIASIEDEYGD 846
            MRMGPSMPLLGALLGAGLTATSAFVSTTP+VSSSLS RQ          XXXXXXXXXXXXXX         VGGEGLAELGSMVSGAVGQ HASAMGSG+GTFLLLADDPPAPPNIYGEVAQGGFFIIFSGVFSAYIIATMIR MPIDQLEKLTAELGGGNEIADLEAQRIETTKRFKELTKDMAQAADPTMGVKPD ALSE+LSQQT KALQTDIASIEDEYGD
Sbjct:    1 MRMGPSMPLLGALLGAGLTATSAFVSTTPVVSSSLSARQLVXXXXXXXXXXXXXXXXXXXXXXRAMLFGGGGVGGEGLAELGSMVSGAVGQAHASAMGSGMGTFLLLADDPPAPPNIYGEVAQGGFFIIFSGVFSAYIIATMIRNMPIDQLEKLTAELGGGNEIADLEAQRIETTKRFKELTKDMAQAADPTMGVKPDGALSERLSQQTTKALQTDIASIEDEYGD 226
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BLAST of mRNA_E_fasciculatus_S2_contig7183.15359.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMV7_ECTSI)

HSP 1 Score: 194 bits (493), Expect = 6.340e-56
Identity = 105/123 (85.37%), Postives = 107/123 (86.99%), Query Frame = 1 
Query:  478 FLLLADDPPAPPNIYGEVAQGGFFIIFSGVFSAYIIATMIRTMPIDQLEKLTAELGGGNEIADLEAQRIETTKRFKELTKDMAQAADPTMGVKPDEALSEKLSQQTAKALQTDIASIEDEYGD 846
            FL LA      P     V   GFFIIFSGVFSAYIIATMIRTMPIDQLEKLTAELGGGNEIADLEAQRIETTKRFKELTKDMAQAADPTMGVKPD+ALSE+LSQQT KALQTDIASIEDEYGD
Sbjct:   13 FLRLAFSCLLHPFSTRFVFHRGFFIIFSGVFSAYIIATMIRTMPIDQLEKLTAELGGGNEIADLEAQRIETTKRFKELTKDMAQAADPTMGVKPDDALSERLSQQTTKALQTDIASIEDEYGD 135
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7183.15359.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized9.340e-10988.05protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized6.340e-5685.37protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7183contigE_fasciculatus_S2_contig7183:1329..6150 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start1
Model size1771
Hectar predicted targeting categorychloroplast
Exons4
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-09_002670.1
Cds size678
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7183.15359.1prot_E_fasciculatus_S2_contig7183.15359.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7183 1500..5228 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842380.931332-UTR-E_fasciculatus_S2_contig7183:1328..14991696842380.931332-UTR-E_fasciculatus_S2_contig7183:1328..1499Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig7183 1329..1499 +
1696842380.9834955-UTR-E_fasciculatus_S2_contig7183:5228..61501696842380.9834955-UTR-E_fasciculatus_S2_contig7183:5228..6150Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig7183 5229..6150 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842380.941761-CDS-E_fasciculatus_S2_contig7183:1499..15761696842380.941761-CDS-E_fasciculatus_S2_contig7183:1499..1576Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7183 1500..1576 +
1696842380.9516582-CDS-E_fasciculatus_S2_contig7183:3437..37281696842380.9516582-CDS-E_fasciculatus_S2_contig7183:3437..3728Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7183 3438..3728 +
1696842380.9618437-CDS-E_fasciculatus_S2_contig7183:4412..45001696842380.9618437-CDS-E_fasciculatus_S2_contig7183:4412..4500Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7183 4413..4500 +
1696842380.9727802-CDS-E_fasciculatus_S2_contig7183:5006..52281696842380.9727802-CDS-E_fasciculatus_S2_contig7183:5006..5228Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7183 5007..5228 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7183.15359.1

>prot_E_fasciculatus_S2_contig7183.15359.1 ID=prot_E_fasciculatus_S2_contig7183.15359.1|Name=mRNA_E_fasciculatus_S2_contig7183.15359.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=226bp
MRMGPSMPLLGALLGAGLTATSAFVSTTPIVSSSLSTRQQHQPCSSGRTT
SATPNSRRRTATTAMLFGGGGVGGEGLAELGSMVSGAVGQVHASAMGSGL
GTFLLLADDPPAPPNIYGEVAQGGFFIIFSGVFSAYIIATMIRTMPIDQL
EKLTAELGGGNEIADLEAQRIETTKRFKELTKDMAQAADPTMGVKPDEAL
SEKLSQQTAKALQTDIASIEDEYGD*
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mRNA from alignment at E_fasciculatus_S2_contig7183:1329..6150+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7183.15359.1 ID=mRNA_E_fasciculatus_S2_contig7183.15359.1|Name=mRNA_E_fasciculatus_S2_contig7183.15359.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=4822bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7183:1329..6150+ (Ectocarpus fasciculatus EfasUO2)
TGTCCGCTGGCTTTGGCTCTATCGAAAACCAAACGGGAGGGAAGGCGCAC
GAGGGAGGGAGAGAACGGACGGGCGATAGCTAGAGTAGGCTATTTGTCAA
ACGAAAAGAGAAGAAGGGCGGCCGATTGTGCGAGAGCAGCAGAGAGAGCT
AAGGGGAGCGTGTGGGAAATCATGCGCATGGGACCCAGCATGCCGCTGCT
TGGAGCGTTGCTCGGAGCCGGCTTAACCGCGACCTCGGCATTCGTTTCGT
GAGTTCGTGGTGCAGGCTGCATTTTCATGTGTTGGTGCAGCATTCTGTCT
CCATGCTCGATATTGTTGCCCTTCACATGTTGATGGTTCTTTGCAGTTGA
ACCTGTGGATCAGCCGCAGGTTCGCGGGTGCCGCTTCTGCCCCATCATAT
CATAGCTACAACGCGTGCGCCCAAACCCTGCGGTTGTTATCGTGGGGTTG
CTGCTAAGACCCGCAGAGAAAGTAGGAAGGCAAGGGAGGCTACGTCTGTG
ACTTCGTGCAAACTCTAGAGCCACCTCTTGCCGATCTTGGCTTACTGAAT
CCATCTGCGGTGTGTGTGGCAGCGACCACGAGAAGACATAAACACAGCAG
CAATCATGCATGCACACAGCAGTAGCACGTGTACACCGATCAGCAAAAGA
TAAGCCTGTTTGCCTCGCAAGCTACATGGGTGTTGTCGTTGCTGAAAGAC
GTTGCAAAACCACGTGTGTATACATGTATGCATATCTGTACTGCTGCTGT
GGTTAGGAATGTGTCTCCCGCACGTGCGACTTGCCGGTAAGTCTTAGCCA
CGTGCGCTTGGGTGGGGTACATGTGGCTCGTTGCCCGACCTGTGCGATAA
ATACGTAAATACGACACCCCCCCCTCCCCCCGGCCTTGGCAACACCTCTA
GGGTTCACGATGGGTCCCACGGTAGCCCTGCAACACACTCATGGACTTTG
AACACGATATATCCATCCGGTGGGGAAACTAAGGAATTACCCCACCGGCG
GTTTGGTTTCTAAACAGCGTTGCCGTTAAAGGTTTCCACACACACACCGA
TCACAGAGAACGCCACATGAGTGTGGCAATTTTAGATTCATTTTGGAGTG
TGTGCTGTGGAGCCGCTCTGCATCATCCCCAGCGCCGTCGGCTTGTCTTC
GTTCCTGAAGAGATAGACCGGCGCCCTGCCTGCTGGACACAACACACACA
CAAGTGGCACCCATGCACCCAACCCCGTGAAAACCCTTGAGACTTGCTGA
CCTGCGCTTGATAGTGCGGGAGGATGTTTTGACGTGAATGGATGCCGTAG
TCGTTAGACCGTTGGCCTAGCACCCCTACGTACAATGCCGGGACGGAGGA
GCGACATGCCTTCCGGGTTTTCGCCGGCCCAGGCTACCTTTTTCAAGGAT
GAACCAGACGTTGGTCATCACCGCCGCGTTGGCTGTGCCAAACCAGATTA
CCATTACCATTACCATGGGTTAACTGGGCGTCCCGGCTAACCAGACCTTG
CGCTAGATAGTGCAGGGGGAGGCTCAATATGTGTGTCCCTAGGTAGCATT
CTCCACGGCGCGAATAGCCCCGAGCCTAGAGTCCCACACACAGCGAGTTG
ATGTTTGTTCCAAAATGGCGTCAAGGCACAGCGTCGTCTTCGAACCCTTT
GTGAAGTGTGCTCACGGTTCCTGAGCCGCGTCTGCAGCTGGCGGTGTCAT
CTGAATATCGCACCGCACGCAAGAACGGGGCTGGCCGTATCAATGAATAT
TGGTTGAGACAGGAATTCTGTGTGTGGTTGTTCGTGCCGGGGGCGAATAT
TGCATTCACAGAAGAAGCTACACTGTTTTGTTGAAACGAATGCCGTTGAC
AAACCTGGCGGCTCGCAAGACTCGCACCCGAACACCCAAACAGACGGGCA
GCAGAGTGCATGCTTGGGACGGGCAGTATCCGCTGTGGGCCAGCGCTGCA
GCGCCTACCCATCTTCTCAGCTCGCCTATCTGTGTGTGTAGTTCTGTGTC
CCATCTGCGTTTTGCTTAATCGTTATTCGGAATACCGGTAACGCCTGAGT
GTAGCGCCCATCCCCCCCCCCACCGTGCCCTGTTTTTTTTTGTGTGTAAC
CCACAACAGGACAACTCCCATCGTGTCCTCAAGCCTGTCCACTCGTCAGC
AGCACCAGCCATGCAGCAGCGGCAGAACAACATCAGCCACACCAAACTCT
CGACGGCGAACAGCTACAACGGCTATGCTGTTCGGGGGCGGAGGAGTGGG
CGGGGAGGGTTTGGCGGAGCTCGGGTCGATGGTGTCCGGTGCCGTGGGGC
AGGTGCACGCGAGCGCGATGGGCTCCGGCTTGGGCACCTTCCTCCTCCTC
GCGGATGATCCGCCGGCGCCCCCCAACATCTACGGCGAAGTCGCACAGGG
GTGAGTGTATGGGAGATGTGTGCCTTGTGTGCTACGTATACTGTACGTCT
ATTCTAGCATGATTTGTGTCTCCTTGTTCTGTGTGAACGAACGTCAGGTG
CTTGTTTTGCCGGTTTAGCGCTTGCACACGTTGTTGACCTTGTGGTCTTC
ATCCCAACGGCTGCAGCGCGAAACGTGAAAAGGTAAAAGCGTATGCTAAA
TAGACAAGGTTGCGGGACGAATAGGATTGGAAGCCTCTTCGTACTTTTGT
TTCGGACATATTGTTCCGGCAGCGCTAATTGACTGGCCTGTTCCCCCGTT
TGTTGGTTGAGGTCGATTTGTTTATTACAGCGACAAGAATTTGGATCACA
TGTTCTTACAACTGTCCTACTGTGTTCGAAATGTTGGTCAGAGCTGTTTT
CCACTCCAGCAGCAGCTGCAACCGTTTTGGTTTTCCAGATTCGACCCACA
ACGAGCCTGCTGATTCCCACAGTGTCGACCCAGCTATAAGGCAGGCCCCA
CGTTATCTTCCAATCCCGACCCTGTTCACGTTGAGTAGCCCCGTACCCTG
CGCGCACGACGCTACCGTTCCCGCCATCTCTCCACCCCACACCCATCGTG
CCCGTTTTCGGTGCGGGTTTGTTTCCTTCACCTGTTTTTTTTTTGTCTCC
TGCCCCCGTTCTCGACACACTTTGTTTTTCACAGAGGTTTTTTCATCATC
TTCTCTGGCGTCTTCTCGGCGTACATCATCGCCACCATGATCCGCACCAT
GCCGATCGACCAGTTGGAGAAGGTGCATGCTGGAGTTTTGGTGTTGGGGC
TGCTCTGCCATTCTTGTCGGTGTTGTTGGTGTTCCTCTGCGTAGTCTCCC
CTGCTCCGTTGTACATTCTCTTTTGCTCTGGGCAGTTTAGCACTCACCCT
GTCGTCTACCCAGTGCTCGCGTACACGTACGTTATTGCACAATTGGAGGA
AGGGATAGGAGCGCGCGGGGAAATCACCGAGTCAATGTTTTGTGCGCTCT
GGTCTGTCTGTCCCTCGCAGGATACATGCAGCCATTTGGTTGACTCGCAT
TTCTGTGTGTTGGAATTCTGCGGCTCAACATTGGTGGAAACAACACCGAA
TCACAACAGAACACAACAATGAAAACCATAACTGGGGCCAAGCCATTACC
TGGACCGAAATTGGGCCAAGTCCGGAAGGACACTTCACTTTCAAATCAAA
CCGCAATAGAAAGAAAACTCACCAAATCCGAACGCCACTAAACGCACAAT
GAATCGGTGCAACCATCGCGAATGGCAGCTCACGGCCGAGCTGGGGGGCG
GAAACGAGATCGCCGACTTGGAGGCGCAGAGGATCGAGACTACCAAGAGG
TTTAAGGAGCTCACTAAAGACATGGCGCAGGCCGCGGATCCTACGATGGG
GGTAAAGCCCGACGAGGCGCTGTCGGAGAAGCTGAGCCAGCAGACGGCGA
AGGCCCTGCAGACGGACATCGCGTCCATAGAGGACGAGTATGGGGACTAG
TCTAGACTAGACTATTAGACGCCGAGGAGCCTTTGTTGTTTGGATGGGTG
ACTTTTCTTTTGGTGGTTTCCCGGATCATTGTTGTTGGCTATGGGGAGCA
AAAGCACGGCCAACTCTGAGACGGAATTTCGTGGCGGCCTGTTGGGGTCC
TGGATGACGAGTGCGTTGTGCAAGATTGCATCTCTTCCCTCTTGTAATGT
CGAGAAGTATGCTGGTTTCGAGGAGCCTTGGCGGAAGTCGACTGGACGAA
AGATAGAGCAGTAGAATGTGATTGTTTCTCTCGACCTGTCTAGAGCTTTC
CCACAGAGTTTGAAGAAAACGACATTGGAATTGAAGGCGTTTTATTTTTT
CAAGCAGACACCCAACACCATGCGAAAGGTACTGCGTGGAGATGTTCCGA
TTCCATGGGAGTGAAACGTGGAGGAAGCTTTCTCTGCGCGAGCTTTTTAT
GGCACGGTTTGGTGCACCAAATTTCGAGGCCTAAAGCACGAGCTTTGGTG
CGACAAGTTGTGGGGATAGTGCACGCACCTTCGATGAGGTTGACTCCAAG
AGCTTCGACCAAGATGTGGTGGCCGAGGTCTTGGGAATGGAGCGATGTCC
GCCGCTGTCCTCTGGGCGTTTCTCGGCCGTATTAGACTAGTGTAGATTGT
GGAGAGATGATGTAGACGTTGTCCTTCAGGTCATTTCGCAGCAAAGCACA
CACAGCTTGAGTACTACGCGAACGGCAGCAATGGGAAAACATGACACAAC
GCATGCCAGGTCCAGATAGTAAGTACGTGGAGGACTTTTCTCTGCGCGTG
TGAAAAGTTTTCTTTTGTAACCCTTTCACTAGCCTCGTTGGAATAATGAA
CAAGAGGGGGCTTTTGCATGGTCGATCGCCCCAGGGGAAAGATCGGTCCA
CAGCCAGCCCGGATAGACTAGA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7183:1329..6150+

>mRNA_E_fasciculatus_S2_contig7183.15359.1 ID=mRNA_E_fasciculatus_S2_contig7183.15359.1|Name=mRNA_E_fasciculatus_S2_contig7183.15359.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=678bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7183:1329..6150+ (Ectocarpus fasciculatus EfasUO2)
ATGCGCATGGGACCCAGCATGCCGCTGCTTGGAGCGTTGCTCGGAGCCGG
CTTAACCGCGACCTCGGCATTCGTTTCGACAACTCCCATCGTGTCCTCAA
GCCTGTCCACTCGTCAGCAGCACCAGCCATGCAGCAGCGGCAGAACAACA
TCAGCCACACCAAACTCTCGACGGCGAACAGCTACAACGGCTATGCTGTT
CGGGGGCGGAGGAGTGGGCGGGGAGGGTTTGGCGGAGCTCGGGTCGATGG
TGTCCGGTGCCGTGGGGCAGGTGCACGCGAGCGCGATGGGCTCCGGCTTG
GGCACCTTCCTCCTCCTCGCGGATGATCCGCCGGCGCCCCCCAACATCTA
CGGCGAAGTCGCACAGGGAGGTTTTTTCATCATCTTCTCTGGCGTCTTCT
CGGCGTACATCATCGCCACCATGATCCGCACCATGCCGATCGACCAGTTG
GAGAAGCTCACGGCCGAGCTGGGGGGCGGAAACGAGATCGCCGACTTGGA
GGCGCAGAGGATCGAGACTACCAAGAGGTTTAAGGAGCTCACTAAAGACA
TGGCGCAGGCCGCGGATCCTACGATGGGGGTAAAGCCCGACGAGGCGCTG
TCGGAGAAGCTGAGCCAGCAGACGGCGAAGGCCCTGCAGACGGACATCGC
GTCCATAGAGGACGAGTATGGGGACTAG
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