mRNA_E_fasciculatus_S2_contig718.15356.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig718.15356.1
Unique NamemRNA_E_fasciculatus_S2_contig718.15356.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
BLAST of mRNA_E_fasciculatus_S2_contig718.15356.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LE38_ECTSI)

HSP 1 Score: 401 bits (1030), Expect = 3.200e-141
Identity = 193/201 (96.02%), Postives = 196/201 (97.51%), Query Frame = 1
Query:    1 MRPARKRLGVRDEVAAAPSAFPDRYLRGEVPCSKHCSAASALVWVCPLEQLDYEYYLPMFFDGIRCLEEPCMTLARQGVSDLLSAARGSSQRILPSLPNIMRALRMAISCKNPGVILFACSALRQLATGNKEVGEALVGYYKMFLHVFNLFMNCTKSTGDKIDYGQRNSQDIGEAVSCTVETLERNGGKHAFAHIKHCIPT 603
            MRPARK L VRDEVAA PSAFPDRYLRGEVPCSKHCSAASALVWVCPLEQLDYEYYLPMFFDGIRCLEEPCMTLARQGVSDLLSAARG  QRILPSLPNIMRALR+AISCKNPGVI+FACSALRQLATGNKEVGEALVGYYKMFLHVFNLFMNCTKSTGDKIDYGQRNSQD+GEAVSCTVETLERNGGKHAFAHIKHCIPT
Sbjct:    1 MRPARKGLSVRDEVAAVPSAFPDRYLRGEVPCSKHCSAASALVWVCPLEQLDYEYYLPMFFDGIRCLEEPCMTLARQGVSDLLSAARGYPQRILPSLPNIMRALRVAISCKNPGVIIFACSALRQLATGNKEVGEALVGYYKMFLHVFNLFMNCTKSTGDKIDYGQRNSQDVGEAVSCTVETLERNGGKHAFAHIKHCIPT 201          
BLAST of mRNA_E_fasciculatus_S2_contig718.15356.1 vs.
Match: Hypothetical (protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y192_9STRA)

HSP 1 Score: 198 bits (504), Expect = 8.060e-59
Identity = 93/184 (50.54%), Postives = 129/184 (70.11%), Query Frame = 1
Query:   61 FPDRYLRGEVPCS-KHCSAASALVWVCPLEQLDYEYYLPMFFDGIRCLEEPCMTLARQGVSDLLSAARGSSQRILPSLPNIMRALRMAISCKNPGVILFACSALRQLATGNKEVGEALVGYYKMFLHVFNLFMNCTKSTGDKIDYGQRNSQDIGEAVSCTVETLERNGGKHAFAHIKHCIPTCE 609
            FP RY RGE+PCS +H S+  AL+W+CPL+ LDYE+YLPMFF+GIRC E+P   +A QGV +LL A++G  +RILP+LP +++ LRMA+  K P +I+ A   ++ L   N  +GEA+V YY+  L VFNLF    ++ GD +DYGQR   DI   +  T+E LER GG+ +FA+IK+ +PT E
Sbjct:  210 FPIRYKRGELPCSIEHKSSGYALLWICPLQTLDYEHYLPMFFEGIRCTEDPYKYMASQGVMELLDASKGYPERILPTLPEVVKYLRMALMSKLPDIIITALRCIQSLVLCNVGIGEAMVPYYRQLLSVFNLFRGKRRNLGDGMDYGQRKGDDINSVIDETLEVLERTGGEDSFANIKYMVPTYE 393          
BLAST of mRNA_E_fasciculatus_S2_contig718.15356.1 vs.
Match: Hypothetical (protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9H4I7_HETAK)

HSP 1 Score: 194 bits (493), Expect = 7.440e-58
Identity = 95/184 (51.63%), Postives = 125/184 (67.93%), Query Frame = 1
Query:   61 FPDRYLRGEVPCS-KHCSAASALVWVCPLEQLDYEYYLPMFFDGIRCLEEPCMTLARQGVSDLLSAARGSSQRILPSLPNIMRALRMAISCKNPGVILFACSALRQLATGNKEVGEALVGYYKMFLHVFNLFMNCTKSTGDKIDYGQRNSQDIGEAVSCTVETLERNGGKHAFAHIKHCIPTCE 609
            FP RY RGE+PCS +H +A  AL WVCPL+ LDY++YLP+FFDGIR  E+P   LARQGV +LL AARG  +R+LP LP ++  LR A+  ++P V+L A   + +L   N  VGEALV YY+  L V NLF+   ++ GD +DYGQR  +D+   V   +E LER GG  AFA+IK+ +PT E
Sbjct:  149 FPVRYNRGELPCSVEHTAAGYALTWVCPLQTLDYDHYLPIFFDGIRATEQPYKFLARQGVRELLEAARGYPERVLPCLPEVVAGLRRALDTRDPPVLLAALGCVEELVGCNAGVGEALVPYYRQLLSVMNLFLAKRENLGDAMDYGQRRGEDLAARVGEVLEALERTGGPDAFANIKYSVPTYE 332          
BLAST of mRNA_E_fasciculatus_S2_contig718.15356.1 vs.
Match: Hypothetical (protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FEA0_9STRA)

HSP 1 Score: 188 bits (478), Expect = 1.420e-56
Identity = 92/202 (45.54%), Postives = 130/202 (64.36%), Query Frame = 1
Query:    7 PARKRLGVRDEVAAAPSAFPDRYLRGEVPCS-KHCSAASALVWVCPLEQLDYEYYLPMFFDGIRCLEEPCMTLARQGVSDLLSAARGSSQRILPSLPNIMRALRMAISCKNPGVILFACSALRQLATGNKEVGEALVGYYKMFLHVFNLFMNCTKSTGDKIDYGQRNSQDIGEAVSCTVETLERNGGKHAFAHIKHCIPTCE 609
            P + + G   +     + FP RY RGE+PC+ +H S+A+ L WVCPL  LDYE+YLP+F DGIRC E P   LARQG  +LL  A+G   R++P +P +++ LR+A++  +P +IL A + L++L   N  VGEALV YY+  L V NLF+    + GD IDY Q    D+  A+  T+E LE+NGG +AF +IK+ +PT E
Sbjct:   53 PPKPKAGAYRKKDVPTTLFPIRYKRGELPCAIEHRSSANGLSWVCPLHNLDYEHYLPIFVDGIRCTENPYCFLARQGCHELLEGAQGYPDRVIPCIPELIKPLRLALTTNHPDIILAALTFLKELVLCNYGVGEALVPYYRQLLSVLNLFLTKRTNIGDAIDYSQFKGNDMSTAIMETLEVLEKNGGSNAFINIKYMVPTYE 254          
BLAST of mRNA_E_fasciculatus_S2_contig718.15356.1 vs.
Match: Uncharacterized (protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y431_AURAN)

HSP 1 Score: 181 bits (460), Expect = 3.220e-54
Identity = 88/196 (44.90%), Postives = 127/196 (64.80%), Query Frame = 1
Query:   25 GVRDEVAAAPSAFPDRYLRGEVPCS-KHCSAASALVWVCPLEQLDYEYYLPMFFDGIRCLEEPCMTLARQGVSDLLSAARGSSQRILPSLPNIMRALRMAISCKNPGVILFACSALRQLATGNKEVGEALVGYYKMFLHVFNLFMNCTKSTGDKIDYGQRNSQDIGEAVSCTVETLERNGGKHAFAHIKHCIPTCE 609
            GV  +     + FP RY RGE+PCS +H  + + L W+CPL QLDYE+YLP+F DGIRC E P   +ARQG  +L+  A+G    +LP LP++++ +R+A++ K+P ++  A  AL+++   N  VGEALV +Y+  L V NLF    ++ GD I YGQR   D+G AV  T+E LE+ GG +AF +IK+ +P  E
Sbjct:   30 GVFRKTKVEATMFPIRYRRGELPCSIEHRGSGNNLSWICPLLQLDYEHYLPIFLDGIRCTESPYQFVARQGFDELIEEAKGFPDCVLPCLPDLIKPIRLALNTKDPDIVHAALRALQKIVLSNYGVGEALVPFYRQLLSVMNLFFTKRQNLGDAIFYGQRKGTDLGTAVLETLELLEKTGGPNAFVNIKYMVPAYE 225          
BLAST of mRNA_E_fasciculatus_S2_contig718.15356.1 vs.
Match: Uncharacterized (protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SS01_9ARCH)

HSP 1 Score: 174 bits (442), Expect = 2.690e-50
Identity = 86/194 (44.33%), Postives = 121/194 (62.37%), Query Frame = 1
Query:   31 RDEVAAAPSAFPDRYLRGEVPCS-KHCSAASALVWVCPLEQLDYEYYLPMFFDGIRCLEEPCMTLARQGVSDLLSAARGSSQRILPSLPNIMRALRMAISCKNPGVILFACSALRQLATGNKEVGEALVGYYKMFLHVFNLFMNCTKSTGDKIDYGQRNSQDIGEAVSCTVETLERNGGKHAFAHIKHCIPTCE 609
            R E+   PS  P+RY RGE+PC+ +H ++   L W CPLE LDYEYYLP+FFDG++C +     +ARQG+ D+L A+RG  +RI+P L  + R LR A++  +  ++L    +L QL   N EVG  L+ Y + FL     FM+  K TGDKIDYGQR + D+GE +   +E +E +GG  A   IK  +P C+
Sbjct:  130 RPEIKIPPSMLPNRYKRGELPCTIEHGTSGLYLSWACPLENLDYEYYLPLFFDGLQCKDHITSFIARQGIEDMLYASRGHPERIIPVLHLLARPLRNALAKFDEEILLPVLKSLEQLILSNAEVGAELLKYGRQFLVPIAYFMDKNKHTGDKIDYGQRRNDDVGEQIRRVLELMEEHGGPRALQLIKFSVPLCK 323          
BLAST of mRNA_E_fasciculatus_S2_contig718.15356.1 vs.
Match: Parkin (co-regulated protein-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJW5_9STRA)

HSP 1 Score: 164 bits (415), Expect = 4.030e-46
Identity = 87/189 (46.03%), Postives = 113/189 (59.79%), Query Frame = 1
Query:   46 AAPSAFPDRYLRGEVPCSKHCSAASALVWVCPLEQLDYEYYLPMFFDGIRCLEEPCMTLARQGVSDLLSAARGSSQRILPSLPNIMRALRMAISCKNPGVILFACSALRQLATGNKEVGEALVGYYKMFLHVFNLFMN---CTKSTGDKIDYGQRNSQDIGEAVSCTVETLERNGGKHAFAHIKHCIPT 603
            A PS FP RY  G++PCS   S    LVWVCPL+QLDY YYLP+F DGIRC  +PC  LARQG+ DLLSAA G+ +R++P L +I  ALR A    +  ++ + C  L  L     EVG ALV +YK FL + N  +N      + G +I  G     D+   +  T++ LER+GG   FA IKH +PT
Sbjct:  151 ATPSRFPGRYAMGDIPCSID-SGDGVLVWVCPLQQLDYHYYLPLFLDGIRCTADPCKMLARQGLLDLLSAATGTPERVVPLLKDIAMALRNACLTDSQELVAYTCKVLETLVGIGPEVGLALVPHYKAFLSLLNKHINDAPLKNAQGKEI--GHNRKLDLSVLIEETLQMLERSGGSGVFAVIKHAVPT 336          
BLAST of mRNA_E_fasciculatus_S2_contig718.15356.1 vs.
Match: Hypothetical (protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4ED43_9STRA)

HSP 1 Score: 164 bits (416), Expect = 5.560e-46
Identity = 77/184 (41.85%), Postives = 119/184 (64.67%), Query Frame = 1
Query:   61 FPDRYLRGEVPCS-KHCSAASALVWVCPLEQLDYEYYLPMFFDGIRCLEEPCMTLARQGVSDLLSAARGSSQRILPSLPNIMRALRMAISCKNPGVILFACSALRQLATGNKEVGEALVGYYKMFLHVFNLFMNCTKSTGDKIDYGQRNSQDIGEAVSCTVETLERNGGKHAFAHIKHCIPTCE 609
            FP RY RGE+PC+ +H +  + L W CPL QLDYE+YLP+F DGIRC +     +ARQG  +++  A+G    +LP +P +++ +R+A++  +P +++   +AL+++   N  VGEA+V +Y+  L   NLF    ++ GD+I YGQR   D+G AV  T+E LE+ GG +AF +IK  +P  E
Sbjct:  182 FPTRYERGELPCAIEHGACHNTLSWACPLLQLDYEHYLPIFLDGIRCTDARYKFVARQGFDEMIEEAKGFPDCVLPVVPALIKPIRLALATHDPDIVVAGLNALQKVVLSNYGVGEAMVPFYRQLLQPMNLFYTKRQNIGDQIFYGQRKGTDLGTAVLETLELLEKTGGPNAFVNIKSYVPVYE 365          
BLAST of mRNA_E_fasciculatus_S2_contig718.15356.1 vs.
Match: Putative (mitochondrial PACRGB n=2 Tax=Leptomonas pyrrhocoris TaxID=157538 RepID=A0A0M9GB55_9TRYP)

HSP 1 Score: 162 bits (409), Expect = 1.800e-45
Identity = 82/186 (44.09%), Postives = 117/186 (62.90%), Query Frame = 1
Query:   52 PSAFPDRYLRGEVPCSKHCSAASALVWVCPLEQLDYEYYLPMFFDGIRCLEEPCMTLARQGVSDLLSAARGSSQRILPSLPNIMRALRMAISCKNPGVILFACSALRQLATGNKEVGEALVGYYKMFLHVFNLFMNCTKSTGDKIDYGQRNSQDIGEAVSCTVETLERNGGKHAFAHIKHCIPTCE 609
            P+ F   Y RG++P S   +A   L+W   + +LDY +YLP+FFDG+R LEEP   +A QG  DLL        +ILP++P I+  L+ A++ ++P V+      +++L      VGEALV YY+  L VFNLF N TK+ GD++DYGQRNSQD+   ++ T+  LER GG  A+ +IK+ IPT E
Sbjct:  133 PTEFRHHYERGDLPLSVQHAAKRTLMWKVDVSKLDYHHYLPIFFDGLRELEEPFSFVAHQGSLDLLE---NGGAKILPTVPQIIMPLKTALNTRHPDVLRKVFHVIQKLVVSGDHVGEALVPYYRQLLPVFNLFKNRTKNMGDRMDYGQRNSQDLSSLINDTLYLLERYGGPDAYINIKYMIPTYE 315          
BLAST of mRNA_E_fasciculatus_S2_contig718.15356.1 vs.
Match: Uncharacterized (protein n=18 Tax=Leishmania TaxID=5658 RepID=E9AFU6_LEIMA)

HSP 1 Score: 155 bits (393), Expect = 3.980e-43
Identity = 79/197 (40.10%), Postives = 118/197 (59.90%), Query Frame = 1
Query:   19 RLGVRDEVAAAPSAFPDRYLRGEVPCSKHCSAASALVWVCPLEQLDYEYYLPMFFDGIRCLEEPCMTLARQGVSDLLSAARGSSQRILPSLPNIMRALRMAISCKNPGVILFACSALRQLATGNKEVGEALVGYYKMFLHVFNLFMNCTKSTGDKIDYGQRNSQDIGEAVSCTVETLERNGGKHAFAHIKHCIPTCE 609
            + G   +    P+ F   Y R ++P S    A  +L W   + +LDY +YLP+FFDG+R LEEP   +A QG  DLL    G   +ILP++P ++  L+ A++ ++P V+      +++L      +GEALV YY+  L VFN+F N TKS GD++DYGQRNS D+   ++ T+  LER GG  A+ +IK+ +PT E
Sbjct:  118 KAGAYSKQRMPPTDFRHHYERSDLPLSIQHGAKRSLHWKVDVSKLDYHHYLPIFFDGLRELEEPFSFVAYQGSMDLLE---GGGAKILPTVPQLIVPLKTALNSRHPDVLRKVFHVIQKLVVSGDHIGEALVPYYRQLLPVFNMFKNRTKSMGDRMDYGQRNSHDLSSLINDTLYLLERYGGPDAYINIKYMVPTYE 311          
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig718.15356.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Uncharacterized3.200e-14196.02protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Hypothetical8.060e-5950.54protein n=1 Tax=Fibrocapsa japonica TaxID=94617 Re... [more]
Hypothetical7.440e-5851.63protein n=1 Tax=Heterosigma akashiwo TaxID=2829 Re... [more]
Hypothetical1.420e-5645.54protein n=1 Tax=Florenciella parvula TaxID=236787 ... [more]
Uncharacterized3.220e-5444.90protein n=1 Tax=Aureococcus anophagefferens TaxID=... [more]
Uncharacterized2.690e-5044.33protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A48... [more]
Parkin4.030e-4646.03co-regulated protein-domain-containing protein n=1... [more]
Hypothetical5.560e-4641.85protein n=1 Tax=Pelagomonas calceolata TaxID=35677... [more]
Putative1.800e-4544.09mitochondrial PACRGB n=2 Tax=Leptomonas pyrrhocori... [more]
Uncharacterized3.980e-4340.10protein n=18 Tax=Leishmania TaxID=5658 RepID=E9AFU... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig718contigE_fasciculatus_S2_contig718:15549..18071 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score404.4
Seed ortholog evalue3.1e-110
Seed eggNOG ortholog2880.D8LE38
Model size612
Hectar predicted targeting categoryother localisation
Exons5
EggNOG free text desc.negative regulation of cell death
EggNOG OGsKOG3961@1,KOG3961@2759
Ec32 ortholog descriptionArmadillo-type fold
Ec32 orthologEc-05_004190.1
Cds size612
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842380.4956543-CDS-E_fasciculatus_S2_contig718:15548..156631696842380.4956543-CDS-E_fasciculatus_S2_contig718:15548..15663Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig718 15549..15663 +
1696842380.5127113-CDS-E_fasciculatus_S2_contig718:16000..161161696842380.5127113-CDS-E_fasciculatus_S2_contig718:16000..16116Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig718 16001..16116 +
1696842380.522989-CDS-E_fasciculatus_S2_contig718:16914..170791696842380.522989-CDS-E_fasciculatus_S2_contig718:16914..17079Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig718 16915..17079 +
1696842380.53372-CDS-E_fasciculatus_S2_contig718:17501..176051696842380.53372-CDS-E_fasciculatus_S2_contig718:17501..17605Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig718 17502..17605 +
1696842380.5450087-CDS-E_fasciculatus_S2_contig718:17959..180711696842380.5450087-CDS-E_fasciculatus_S2_contig718:17959..18071Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig718 17960..18071 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig718.15356.1prot_E_fasciculatus_S2_contig718.15356.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig718 15549..18071 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig718.15356.1

>prot_E_fasciculatus_S2_contig718.15356.1 ID=prot_E_fasciculatus_S2_contig718.15356.1|Name=mRNA_E_fasciculatus_S2_contig718.15356.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=204bp
MRPARKRLGVRDEVAAAPSAFPDRYLRGEVPCSKHCSAASALVWVCPLEQ
LDYEYYLPMFFDGIRCLEEPCMTLARQGVSDLLSAARGSSQRILPSLPNI
MRALRMAISCKNPGVILFACSALRQLATGNKEVGEALVGYYKMFLHVFNL
FMNCTKSTGDKIDYGQRNSQDIGEAVSCTVETLERNGGKHAFAHIKHCIP
TCE*
back to top

mRNA from alignment at E_fasciculatus_S2_contig718:15549..18071+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig718.15356.1 ID=mRNA_E_fasciculatus_S2_contig718.15356.1|Name=mRNA_E_fasciculatus_S2_contig718.15356.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=2523bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig718:15549..18071+ (Ectocarpus fasciculatus EfasUO2)
ATGCGACCAGCCAGGAAGAGGTTGGGCGTGAGAGACGAAGTGGCTGCCGC ACCGTCCGCGTTTCCGGACCGATATCTCAGAGGAGAGGTTCCTTGCTCCA AGCATTGCTCTGCTGGTAAGAAAATAACCATGTCTGCCTTCGGAGGGGGT TTTAGAACTATCACCGATTGCGTAGGATACCAAACTCTGGGTCGCTTTTC AAACCCAAATGTACTGCAGTCAACAGCACAAAAAACCGTTAACGGTGCCG AAAATGGAGGCGTTGGAATCGAAAGCACACCATTTGATTGTGGCACATCC TCTTCGTCGTGGAATAATCGCCTGTCCGATTTTCGAGGAGGACCTATCGC TAAGGTGTTAGACCGCGTTTTGCGCTGGGGCGGCGTGATTTGCCTGCACG TTGCAATCAAGTGTGAACGTAGCCGCCTCCGTTCCTTCTTCCCATAATTC AGCAAGCGCGTTGGTCTGGGTCTGTCCTCTGGAGCAGCTGGATTACGAGT ACTACTTGCCAATGTTTTTTGATGGAATCCGCTGCCTCGAAGAACCGTGC ATGACGCTAGCAAGACAGGTCAGTGCTTACCCAATGTGAAGTTAAAGGGG CCCAACCGGCTCAAATAGTCCATTTAACCTCACAATATAAACACCTTGAG GTGATTGACTTCAGCGCTGACTAGTGGTCTAGTGGTTATCGTGCTTCTCA ACACCATATGATGCTATTGGCATTTCAGTATGTCTTCAACTCAAGCCCCA GTCTTTTTGATGCAGAGAGTTCATGAATATACTGCTTGCATCGCTCTGGT CCCAGTTCGTCTCATGCGGAAAAGCGCACTGCATCTTGTATGACGGGAAT CGAACCTGCGACGTTCTTTCGTGGGGTAAAATGGACTCTCCCCCTAGACC ATCGCTGACCACTGTATGTAGGCTGTATGTAGGCTAGTAGTGGTACACTG CCTGCTAAACGTCCTATCTCGGACACTCCAAAAGACGGAACAACGCCCCT CTCTTCCTGATTCTGGTGTTTTGGAAATAAGGGTGGGTAGCTCTGGAAAC CGGGGAGAACTCTGGCGTCATTGGTCACACCTGAGTTGTCCATAGTAATC GACGGCTCTATAGTTCTGAGACTTGGTGAGATGTCGTGGCGAGTCCACCA ACGTTCACAAGGCACCATGAACCTCCACGAAAAGCATCAGCCTACGGCAA CCTCCATGGCACGTGAATGAAGCGTACGTGGCCCTCTACAATAGATTCAC GAGACATCGGAAGACCCCATGATTCGAGACGCTCATGACAATTAGGTCCA TGCGTAAACACACAAAAAAACTGCAATCAGATTAAAGTATTGTGTTGCCT ATGCAACCAACACCAGGGGGTGTCTGATCTTTTGAGCGCGGCGCGAGGCT CTTCCCAGCGCATCCTGCCATCATTGCCGAACATCATGAGGGCCCTGAGG ATGGCCATCTCTTGCAAGAATCCAGGAGTGATTCTGTTCGCTTGCAGTGC TCTACGCCAGCTTGCCACCGGGAACAAAGAGGTTCGTTCGTGCAGCTATC GACAACCGCTGGAGAACAGCGAGTCTCGACGATGAGAATCGTGCTTGTAC CGCTAAGGCTGCTTACTTGCAGTCTCTACCGATGTTTCTCATTGCACCAC TCCGATGCTCTTCGCTTCGGTTTGATGAATGATGTGACCGGTTGATAACT CGATATCCCTCGCATTAGAAGTCTTCATGCTGGTTAGATGACTGGTCGTC GACGTTTTCAGTACCCCGTGGTACTCGTGAAGAGAATCCCACTAGTCACC GTCACGAAGGAACTTTCTGCCGAAAAGAACGGTCACCAACCCGTACATTG CTGGCCATGATAGTTTTGTGTCTACCGCTTGGACCTTACTCCTCGCAACC AGCTCCCGTCAACGGTGTATAAACGTCCGAAAATCATGCCACTCTGAACA CAGGTGGGCGAGGCTTTGGTGGGGTATTACAAGATGTTCTTGCACGTCTT CAATTTGTTCATGAACTGCACCAAGAGCACCGGGGACAAGATAGACTACG GACAGCGGTGAGAGCTAAAGTATACGTGTTCGGAGCAACGAGGTGTACTT CTACGTCATCGGTAGCTCAGCGGCGCTCGTTCGGTGGTCACGGTTGACGA GACTTGGCGAGATCATCCCATCGTCAGAGCTCGTTCGCAGTACATATCAT ACCCCTGTGAAAAAAATGCAGACCAGACAACAATCTATTGCGCACCCGTT GCGTCCATGTTTGAAAAGCATACTTCTAGCAGTATAGATCGCTACGCTGT GTGACACCTTAGTTCGCTCTAATAGCAAAACTCGTACTAGGCTGCGCCTT GTTATCACAGACACACCGGTATGTCGCTGTTGTCGGTGGCGATGGCGTTT TCGTCCCTCAGGAATAGCCAAGACATTGGTGAGGCCGTGTCGTGCACGGT GGAGACGTTAGAGCGCAACGGTGGCAAGCATGCGTTTGCCCACATCAAGC ACTGCATCCCTACGTGTGAGTAA
back to top

Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig718:15549..18071+

>mRNA_E_fasciculatus_S2_contig718.15356.1 ID=mRNA_E_fasciculatus_S2_contig718.15356.1|Name=mRNA_E_fasciculatus_S2_contig718.15356.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=612bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig718:15549..18071+ (Ectocarpus fasciculatus EfasUO2)
ATGCGACCAGCCAGGAAGAGGTTGGGCGTGAGAGACGAAGTGGCTGCCGC
ACCGTCCGCGTTTCCGGACCGATATCTCAGAGGAGAGGTTCCTTGCTCCA
AGCATTGCTCTGCTGCAAGCGCGTTGGTCTGGGTCTGTCCTCTGGAGCAG
CTGGATTACGAGTACTACTTGCCAATGTTTTTTGATGGAATCCGCTGCCT
CGAAGAACCGTGCATGACGCTAGCAAGACAGGGGGTGTCTGATCTTTTGA
GCGCGGCGCGAGGCTCTTCCCAGCGCATCCTGCCATCATTGCCGAACATC
ATGAGGGCCCTGAGGATGGCCATCTCTTGCAAGAATCCAGGAGTGATTCT
GTTCGCTTGCAGTGCTCTACGCCAGCTTGCCACCGGGAACAAAGAGGTGG
GCGAGGCTTTGGTGGGGTATTACAAGATGTTCTTGCACGTCTTCAATTTG
TTCATGAACTGCACCAAGAGCACCGGGGACAAGATAGACTACGGACAGCG
GAATAGCCAAGACATTGGTGAGGCCGTGTCGTGCACGGTGGAGACGTTAG
AGCGCAACGGTGGCAAGCATGCGTTTGCCCACATCAAGCACTGCATCCCT
ACGTGTGAGTAA
back to top