mRNA_E_fasciculatus_S2_contig7176.15353.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7176.15353.1
Unique NamemRNA_E_fasciculatus_S2_contig7176.15353.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
BLAST of mRNA_E_fasciculatus_S2_contig7176.15353.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU07_ECTSI)

HSP 1 Score: 129 bits (323), Expect = 6.220e-35
Identity = 66/85 (77.65%), Postives = 73/85 (85.88%), Query Frame = 3
Query:    3 ETMMKIMTSTSALQQSAVGADCDDERSLDAIARGADWGKAWERKQFPMDPSTCTFWCAIALGALAKGSPIESVSKYAELAQEARA 257
            ETM+KIM S ++LQQSAV ADCDDERS DAIARGA W +A ER Q P DPSTCTFWCAIALGALA+GSPI+SV KY+ELAQEA A
Sbjct:   27 ETMVKIMRSPASLQQSAVEADCDDERSYDAIARGAHWIQASERNQLPRDPSTCTFWCAIALGALAEGSPIQSVYKYSELAQEALA 111          
BLAST of mRNA_E_fasciculatus_S2_contig7176.15353.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZI7_ECTSI)

HSP 1 Score: 101 bits (252), Expect = 2.440e-24
Identity = 53/83 (63.86%), Postives = 62/83 (74.70%), Query Frame = 3
Query:    9 MMKIMTSTSALQQSAVGADCDDERSLDAIARGADWGKAWERKQFPMDPSTCTFWCAIALGALAKGSPIESVSKYAELAQEARA 257
            M+KIMT+   LQ SAVG D  ++   DAI RGADW KA E  Q PM+PS+CTFWCAIALGAL KG PI SV+KY++LA EA A
Sbjct:   29 MVKIMTT---LQSSAVGGDFGEQGRFDAIVRGADWSKASEGHQIPMNPSSCTFWCAIALGALVKGHPIGSVTKYSQLAHEALA 108          
BLAST of mRNA_E_fasciculatus_S2_contig7176.15353.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCV1_ECTSI)

HSP 1 Score: 102 bits (253), Expect = 5.230e-24
Identity = 53/86 (61.63%), Postives = 62/86 (72.09%), Query Frame = 3
Query:    3 ETMMKIMTSTSALQQSAVGADCDDE-RSLDAIARGADWGKAWERKQFPMDPSTCTFWCAIALGALAKGSPIESVSKYAELAQEARA 257
            ETM+ IM   ++ QQS  G DCD+     +A+A G D  K   R QFPMDPS CTFWCA+ALGALAKGSPIESV+ YA+LAQEA A
Sbjct:   50 ETMVTIMLPRASSQQSVFGDDCDEGGHYFEAVAPGGDLSKTSARNQFPMDPSACTFWCAVALGALAKGSPIESVTSYAQLAQEALA 135          
BLAST of mRNA_E_fasciculatus_S2_contig7176.15353.1 vs.
Match: Zn(2)-C6 (fungal-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU13_ECTSI)

HSP 1 Score: 102 bits (253), Expect = 1.350e-23
Identity = 52/85 (61.18%), Postives = 63/85 (74.12%), Query Frame = 3
Query:    3 ETMMKIMTSTSALQQSAVGADCDDERSLDAIARGADWGKAWERKQFPMDPSTCTFWCAIALGALAKGSPIESVSKYAELAQEARA 257
            E M++IM + + LQ+ AVG  CD+E   DAIARG D   A E  Q PM+P +CTFWCAIALGALAKGSP ESV+KY++LA EA A
Sbjct:  145 EAMVQIMATPATLQRPAVGGGCDEEALFDAIARGEDLINASEGHQHPMNPRSCTFWCAIALGALAKGSPFESVAKYSQLAHEALA 229          
BLAST of mRNA_E_fasciculatus_S2_contig7176.15353.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU05_ECTSI)

HSP 1 Score: 102 bits (253), Expect = 1.730e-23
Identity = 56/74 (75.68%), Postives = 60/74 (81.08%), Query Frame = 3
Query:    3 ETMMKIMTSTSALQQSAVGADCDDERSLDAIARGADWGKAWERKQFPMDPSTCTFWCAIALGALAKGSPIESVS 224
            ETM+KIMT  S+LQQSAVGAD   ERS+D  A GA+  KA ER Q PMDPSTCTFWCAIALGALAKGSPIES S
Sbjct:   27 ETMVKIMTPPSSLQQSAVGAD---ERSVDTNAPGANLIKASERNQLPMDPSTCTFWCAIALGALAKGSPIESTS 97          
BLAST of mRNA_E_fasciculatus_S2_contig7176.15353.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K642_9PHAE)

HSP 1 Score: 94.7 bits (234), Expect = 1.520e-22
Identity = 51/84 (60.71%), Postives = 61/84 (72.62%), Query Frame = 3
Query:    9 MMKIMTSTSALQQSAVGADCDDERSLDAIARGADWG-KAWERKQFPMDPSTCTFWCAIALGALAKGSPIESVSKYAELAQEARA 257
            M+K+MT    LQ SAVG D  D+   DA+A+GADW  K  E  Q PM+PS+CTFWCAIALGAL KG PIES +KY++LA EA A
Sbjct:    1 MVKVMT---ILQPSAVGGDFGDQGRFDAMAQGADWSSKVSEGHQIPMNPSSCTFWCAIALGALVKGRPIESGTKYSQLAHEALA 81          
BLAST of mRNA_E_fasciculatus_S2_contig7176.15353.1 vs.
Match: Zn(2)-C6 (fungal-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYW4_9PHAE)

HSP 1 Score: 99.0 bits (245), Expect = 2.690e-22
Identity = 50/83 (60.24%), Postives = 60/83 (72.29%), Query Frame = 3
Query:    3 ETMMKIMTSTSALQQSAVGADCDDERSLDAIARGADWGKAWERKQFPMDPSTCTFWCAIALGALAKGSPIESVSKYAELAQEA 251
            ETM++IM S + LQQSA+G  C +   +  + R   W +A ER Q PMD STCTFWCAIALGALAKGSP+ESV+KY  LA EA
Sbjct:  150 ETMVRIMASPAPLQQSAIGGACSE---VGTMVRAPCWNEASERNQLPMDASTCTFWCAIALGALAKGSPVESVAKYRHLAHEA 229          
BLAST of mRNA_E_fasciculatus_S2_contig7176.15353.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCW5_ECTSI)

HSP 1 Score: 96.3 bits (238), Expect = 2.200e-21
Identity = 50/86 (58.14%), Postives = 60/86 (69.77%), Query Frame = 3
Query:    3 ETMMKIMTSTSALQQSAVGADCDDE-RSLDAIARGADWGKAWERKQFPMDPSTCTFWCAIALGALAKGSPIESVSKYAELAQEARA 257
            ETM+KIM   ++ QQ  +G DCD+     +A+ARG D  K     + PMDPS CTFWCA+ALGALAKGSPIESV+ YA LAQ A A
Sbjct:   27 ETMVKIMLPPASSQQPVLGDDCDEGGHYFEAVARGGDLSKTSAGNRLPMDPSACTFWCAVALGALAKGSPIESVTSYARLAQAALA 112          
BLAST of mRNA_E_fasciculatus_S2_contig7176.15353.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU09_ECTSI)

HSP 1 Score: 96.3 bits (238), Expect = 2.210e-21
Identity = 50/83 (60.24%), Postives = 59/83 (71.08%), Query Frame = 3
Query:    3 ETMMKIMTSTSALQQSAVGADCDDERSLDAIARGADWGKAWERKQFPMDPSTCTFWCAIALGALAKGSPIESVSKYAELAQEA 251
            ETM+KIM S + LQQSA+G        + ++ R   W KA E+ Q PMDPSTCTFWCAIALGALAKG P+ESV+KY  LA EA
Sbjct:   46 ETMVKIMASPAPLQQSAIGGAFG---GVGSMVRARCWNKASEKPQLPMDPSTCTFWCAIALGALAKGCPVESVAKYRHLAHEA 125          
BLAST of mRNA_E_fasciculatus_S2_contig7176.15353.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJG4_9PHAE)

HSP 1 Score: 95.5 bits (236), Expect = 4.330e-21
Identity = 49/82 (59.76%), Postives = 60/82 (73.17%), Query Frame = 3
Query:    9 MMKIMTSTSALQQSAVGADCDDE-RSLDAIARGADWGKAWERKQFPMDPSTCTFWCAIALGALAKGSPIESVSKYAELAQEA 251
            M+KIM   ++ QQ A+G DCD+    L A+A G D GKA  R Q   DPS CTFWCA+ALGALAKG+PIESV+ YA+LA+EA
Sbjct:    1 MVKIMLPPASFQQPALGDDCDEGGHYLKAVAPGGDLGKAPARNQLAKDPSACTFWCAVALGALAKGNPIESVTSYAQLAEEA 82          
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7176.15353.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Uncharacterized6.220e-3577.65protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized2.440e-2463.86protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized5.230e-2461.63protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Zn(2)-C61.350e-2361.18fungal-type domain-containing protein n=1 Tax=Ecto... [more]
Uncharacterized1.730e-2375.68protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized1.520e-2260.71protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Zn(2)-C62.690e-2260.24fungal-type domain-containing protein n=1 Tax=Ecto... [more]
Uncharacterized2.200e-2158.14protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized2.210e-2160.24protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized4.330e-2159.76protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7176contigE_fasciculatus_S2_contig7176:865..1296 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop0
Start1
Model size259
Hectar predicted targeting categoryother localisation
Exons2
Cds size249
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842380.2450216-CDS-E_fasciculatus_S2_contig7176:864..9031696842380.2450216-CDS-E_fasciculatus_S2_contig7176:864..903Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7176 865..903 -
1696842380.2573721-CDS-E_fasciculatus_S2_contig7176:1078..12881696842380.2573721-CDS-E_fasciculatus_S2_contig7176:1078..1288Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7176 1079..1288 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842380.2683458-UTR-E_fasciculatus_S2_contig7176:1288..12961696842380.2683458-UTR-E_fasciculatus_S2_contig7176:1288..1296Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig7176 1289..1296 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7176.15353.1prot_E_fasciculatus_S2_contig7176.15353.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7176 865..1288 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7176.15353.1

>prot_E_fasciculatus_S2_contig7176.15353.1 ID=prot_E_fasciculatus_S2_contig7176.15353.1|Name=mRNA_E_fasciculatus_S2_contig7176.15353.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=83bp
MMKIMTSTSALQQSAVGADCDDERSLDAIARGADWGKAWERKQFPMDPST
CTFWCAIALGALAKGSPIESVSKYAELAQEARA
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mRNA from alignment at E_fasciculatus_S2_contig7176:865..1296-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7176.15353.1 ID=mRNA_E_fasciculatus_S2_contig7176.15353.1|Name=mRNA_E_fasciculatus_S2_contig7176.15353.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=432bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7176:865..1296- (Ectocarpus fasciculatus EfasUO2)
GCGAGACGATGATGAAGATCATGACATCGACCTCCGCTCTACAGCAGTCG GCGGTTGGGGCCGACTGTGATGACGAAAGGTCCTTGGATGCAATCGCACG CGGTGCGGATTGGGGTAAGGCTTGGGAACGCAAGCAGTTTCCTATGGACC CGTCGACGTGCACGTTCTGGTGTGCAATTGCTCTGGGGGCGCTTGCGAAG GGCAGTCCTATCGAGTCGGTAAGAACGTTGCGCCGTTTCTCTCTCGCTGC ATAAGTTGGAGAAGCCCTTGTCGTTTGCCGAAGGTGTCATCATGTTTCCT GTGGTGGCATTGAAACGCCAATTAGTGGGAAGTGTATACATCACAGCCTG TTCATGCTGCAGACGTCCTTGTCTCGCCGGCGTTTTGCGAAAGGTGTCCA AGTACGCTGAACTGGCACAGGAAGCCCGAGCT
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7176:865..1296-

>mRNA_E_fasciculatus_S2_contig7176.15353.1 ID=mRNA_E_fasciculatus_S2_contig7176.15353.1|Name=mRNA_E_fasciculatus_S2_contig7176.15353.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=249bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7176:865..1296- (Ectocarpus fasciculatus EfasUO2)
ATGATGAAGATCATGACATCGACCTCCGCTCTACAGCAGTCGGCGGTTGG
GGCCGACTGTGATGACGAAAGGTCCTTGGATGCAATCGCACGCGGTGCGG
ATTGGGGTAAGGCTTGGGAACGCAAGCAGTTTCCTATGGACCCGTCGACG
TGCACGTTCTGGTGTGCAATTGCTCTGGGGGCGCTTGCGAAGGGCAGTCC
TATCGAGTCGGTGTCCAAGTACGCTGAACTGGCACAGGAAGCCCGAGCT
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