mRNA_E_fasciculatus_S2_contig7172.15350.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7172.15350.1
Unique NamemRNA_E_fasciculatus_S2_contig7172.15350.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
BLAST of mRNA_E_fasciculatus_S2_contig7172.15350.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L164_9PHAE)

HSP 1 Score: 495 bits (1275), Expect = 4.620e-169
Identity = 236/245 (96.33%), Postives = 242/245 (98.78%), Query Frame = 1
Query:    1 EVPGDESWVSPYSSLGPAAKYVTFEPDCAGWNNVRMAFETVVVFAYVTGRTLVMPPIKQRLHGLPQSQAGERVGFFAYYQMEAVEELVDVISMQDFLGRESKNLGKLPPANLLEKPADLWNFFEGDSVRNLTWPAWEVSKKALVFPSSPGKPLPLEDQGFVQRLQDFLNTRQPVTYDEDAWNSKVIHFSGDCHDSRAEGSKNRRPLIHFYAFMLHADTLVDSRVKRFARDRLRYRDRIFCKASQV 735
            EVPGDESWVSPYSSLGPAAKYVTFEPDCAGWNNVRMAFETVVVFAYVTGRTLVMPP+KQRLHGLPQSQAGERVGFFAYYQMEAVEELVDVISMQDFLGRESKNLGKLPPANLLEKPADLWNFFEGDSVRNLTWPAWEV+KKALVFPSSPGKPLPLEDQGF+QRL DFLNTRQ +TYDEDAWNSKVIHFSGDCHD+RAEGSKNRRPLIHFYAFMLHAD LVDSRVKRFARDRLRYRDRIFCKASQ+
Sbjct:  346 EVPGDESWVSPYSSLGPAAKYVTFEPDCAGWNNVRMAFETVVVFAYVTGRTLVMPPVKQRLHGLPQSQAGERVGFFAYYQMEAVEELVDVISMQDFLGRESKNLGKLPPANLLEKPADLWNFFEGDSVRNLTWPAWEVTKKALVFPSSPGKPLPLEDQGFLQRLHDFLNTRQAITYDEDAWNSKVIHFSGDCHDNRAEGSKNRRPLIHFYAFMLHADKLVDSRVKRFARDRLRYRDRIFCKASQI 590          
BLAST of mRNA_E_fasciculatus_S2_contig7172.15350.1 vs.
Match: GDP-fucose (protein O-fucosyltransferase, family GT65 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR32_ECTSI)

HSP 1 Score: 427 bits (1099), Expect = 5.390e-148
Identity = 207/210 (98.57%), Postives = 209/210 (99.52%), Query Frame = 1
Query:  106 MAFETVVVFAYVTGRTLVMPPIKQRLHGLPQSQAGERVGFFAYYQMEAVEELVDVISMQDFLGRESKNLGKLPPANLLEKPADLWNFFEGDSVRNLTWPAWEVSKKALVFPSSPGKPLPLEDQGFVQRLQDFLNTRQPVTYDEDAWNSKVIHFSGDCHDSRAEGSKNRRPLIHFYAFMLHADTLVDSRVKRFARDRLRYRDRIFCKASQV 735
            MAFETVVVFAYVTGRTLVMPP+KQRLHGLPQSQAGERVGFFAYYQMEAVEELVDVISMQDFLGRESKNLGKLPPANLLEKPADLWNFFEGDSVRNLTWPAWEVSKKALVFPSSPGKPLPLEDQGFVQRLQDFLNTRQ VTYDEDAWNSKVIHFSGDCHDSRAEGSKNRRPLIHFYAFMLHADTLVDSRVKRFARDRLRYRDRIFCKASQ+
Sbjct:    1 MAFETVVVFAYVTGRTLVMPPVKQRLHGLPQSQAGERVGFFAYYQMEAVEELVDVISMQDFLGRESKNLGKLPPANLLEKPADLWNFFEGDSVRNLTWPAWEVSKKALVFPSSPGKPLPLEDQGFVQRLQDFLNTRQAVTYDEDAWNSKVIHFSGDCHDSRAEGSKNRRPLIHFYAFMLHADTLVDSRVKRFARDRLRYRDRIFCKASQI 210          
BLAST of mRNA_E_fasciculatus_S2_contig7172.15350.1 vs.
Match: Fucosyltransferase (n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U3X1_9STRA)

HSP 1 Score: 180 bits (457), Expect = 1.120e-49
Identity = 106/248 (42.74%), Postives = 146/248 (58.87%), Query Frame = 1
Query:    7 PGDESWVSPYSSLGPAAKYVTFEPDCAGWNNVRMAFETVVVFAYVTGRTLVMPPIKQRLHGLPQ-SQAGERVGFFA-YYQMEAVEELVDVISMQDFLGRESK--NLGKLPPANLLEKPAD-LWNFFEGDSVRNLTWPAWEVSKKALVFPSSPGKPLPLEDQGFVQRLQDFLNTRQPVTYDEDAWNSKVIHFSGDCHDSRAEGSKNRRPLIHFYAFMLHADTLVDSRVKRFARDRLRYRDRIFCKASQV 735
            P  E  V+P+++LGP  KYVTFEPD  GWNN+RMA E V+VFAY TGRTLVMPP +Q ++ L + S  G+    FA ++ +  ++E +++I M+DFL  E+   NLG LPP+N  +   D LW + EG  V    W  ++V    L FP +PGKP+        +RL++F   R PV Y+E   ++KVIHF         +GS   R L HFY F    D  +D  VKRF R  + YRD +FC A ++
Sbjct:  164 PDLEKVVNPWAALGPEKKYVTFEPDRGGWNNIRMAMEVVLVFAYATGRTLVMPP-EQNMYLLNKGSDPGDNTLHFADFFYLHRLQEKMEMIEMKDFLETEAVTGNLGALPPSNSTDLRRDVLWKYLEGLEVGTTHWKPFDV---CLAFPETPGKPIEDHSAEQQERLKEFCGKRTPVHYNETLQDAKVIHFGA------GQGS---RVLAHFYTFEHFMDPALDRAVKRFVRSYIHYRDEVFCAAGRI 398          
BLAST of mRNA_E_fasciculatus_S2_contig7172.15350.1 vs.
Match: Uncharacterized (protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S0N0_9ARCH)

HSP 1 Score: 133 bits (335), Expect = 1.460e-32
Identity = 89/254 (35.04%), Postives = 126/254 (49.61%), Query Frame = 1
Query:   31 PYSSLGPAAKYVTFEPDCAGWNNVRMAFETVVVFAYVTGRTLVMPPIKQRLHGLPQSQAGERVGFFA-YYQMEAVEELVDVISMQDFLGRE---------SKNLGKLPPANLL-------EKPADLWNFFEGDSVRNLTWPAWEVSKKALVFPSSPGKPLPLED--QGFVQRLQDFLNTRQPVTYDEDAWNSKVIHFSGDCHDSRAEGSKNRRPLIHFYAFMLHADTLVDSRVKRFARDRLRYRDRIFCKASQV 735
            PY   GP  KYVTFEPD  GWNN+RM  E V+VFAY TGRTLV+PP  Q ++ L   +  ++   FA ++  E ++E + VI+M++FL RE         S +L + PP N         E+   +W +    S      P W+   + LV PS P       D  +   QRL  F   R  + YD+D  N   +HF        ++     R L HFY F+   +  ++   KRF RD + Y+  IFCKA+ +
Sbjct:   91 PYIDYGPRVKYVTFEPDVGGWNNIRMQMELVLVFAYATGRTLVLPP-DQPMYLLQAGKGHQKAHSFADFFPFEKIQERMSVITMEEFLQREAVAGHLRNRSTHLVQFPPGNKTVFNTMEREERWAMWAYLRDVSA----CPPWKSMHEFLVIPSGPHDNRSATDLSEPEQQRLAAFAANRTAMYYDDDWQNEPYLHFI-------SKPELGYRLLEHFYTFIYFENQEMERFFKRFVRDYVHYQREIFCKAALI 332          
BLAST of mRNA_E_fasciculatus_S2_contig7172.15350.1 vs.
Match: Uncharacterized (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSB5_9STRA)

HSP 1 Score: 126 bits (317), Expect = 8.700e-30
Identity = 89/245 (36.33%), Postives = 127/245 (51.84%), Query Frame = 1
Query:   43 LGPAAKYVTFEPDCAGWNNVRMAFETVVVFAYVTGRTLVMPPIKQRLHGL--PQSQAGERVGFFAYYQMEAVEEL--VDVISMQDFLGRE-SKNLGKLPPANLLEKPADLWNFFEGDSVRNLTWPAWEVSKKALVFPSSPGKPLPLEDQGFVQR---------LQDFLNTRQPVTYDEDAWNSKVIHFSGDCHDSRAEGSKNRRPLIHFYAFMLHADTLVDSRVKRFARDRLRYRDRIFCKASQV 735
            LGP  KYVTFE D AGWNN RM  E V++FA +TGRTLVMPP +QR++ L   ++ A  R+ F  ++ +E V  L  + VI+ ++FL RE ++N G      L +  ++L +  E   +      AW  +   LV P   G  LP E  G V           ++ +L  R+ + Y  +   + +IH+           ++  R L HFY F  H+   VD   KR  RD + YRD +FCKASQV
Sbjct:  165 LGPERKYVTFEADTAGWNNKRMGMEAVLIFASLTGRTLVMPP-EQRIYQLNHDRAAANARLDFSDFFPLERVTALHRLSVITTEEFLAREGAQNAGSTLRIELSKAASEL-SAVEAARLLEKVAGAWGEAALPLVRPGRQGYVLPFEAGGRVNLTDPRYADGDVERWLAGRELLEYTPEMQAAPIIHWR----------ARESRLLTHFYTFARHSAPAVDRYHKRLMRDLMHYRDEMFCKASQV 397          
BLAST of mRNA_E_fasciculatus_S2_contig7172.15350.1 vs.
Match: Hypothetical (protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A6S7ZGN1_9STRA)

HSP 1 Score: 125 bits (313), Expect = 3.920e-29
Identity = 93/287 (32.40%), Postives = 135/287 (47.04%), Query Frame = 1
Query:    4 VPGDESWVSPYSSLGPAAKYVTFEPDCAGWNNVRMAFETVVVFAYVTGRTLVMPPIKQRLHGLPQSQAGER--------------------VGFFAYYQMEAVEELVDVISMQDF------------LGRESKNLGKLPPAN--LLEKPADLWNFFEGDSVRNLTWPAWEVSKKALVFPSSPGKPLPLEDQGFVQRLQDFLNT---------RQPVTYDEDAWNSKVIHFSGDCHDSRAEGSKNRRPLIHFYAFMLHADTLVDSRVKRFARDRLRYRDRIFCKASQV 735
            +P D+ W SPY +LGP  KY+ FEPD  GWNN+R+ FE  +  A+ TGRT V+PP + R++ L +S   ++                     GF   + ME + E + VI+M++F            L R  + L KL   N  L  K + L ++ +  SV+    P W  SK  + FP        L  +G  +   + LN          R+PV YDE+ WNSKV+ FS  C  +        R L+ FY+ +  AD   D  +KRF RD L Y   I C  +++
Sbjct:  159 LPKDKVWESPYKNLGPKNKYLLFEPDEGGWNNLRLGFEANLALAFATGRTFVLPP-RDRVYLLKKSSQQQKEKLNKLFKSDTNLISARSPVYGFEDIFAMEPLRERMRVITMEEFIREVINDPSNNELPRPQEELIKLVQENKFLSWKNSLLRSWIQRISVQ----PKWNPSKVFVAFPQRDR----LHKEGIEKFTDNQLNVGMRPWKKRRREPVFYDEELWNSKVLLFS-QCRGAPC------RMLVQFYSLLYFADEKDDKMLKRFIRDHLHYSSDILCTGARI 429          
BLAST of mRNA_E_fasciculatus_S2_contig7172.15350.1 vs.
Match: Hypothetical (protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZW72_TRICV)

HSP 1 Score: 122 bits (306), Expect = 2.490e-28
Identity = 89/279 (31.90%), Postives = 130/279 (46.59%), Query Frame = 1
Query:    1 EVPGDESWVSPYSSLGPAAKYVTFEPDCAGWNNVRMAFETVVVFAYVTGRTLVMPPIKQRLHGLPQSQAGERVGFFAYYQMEAVEELVDVISMQDFLGRESKNLGKL---------PPANLLEKPADLWNFFEGDSVRNLTW-PAWEVSKKALVFPSSPGKPLPLE------------------------DQGFVQRLQDFLNTRQPVTYDEDAWNSKVIHFSGDCHDSRAEGSKNRRPLIHFYAFMLHADTLVDSRVKRFARDRLRYRDRIFCKASQV 735
            ++ GD  + SP+   G   KY+TFE D  GWNN+RMA ET+V  A+  GRTLV+ P K ++    QS+      FF    +    + +DV++M +FL +E+  +G L         PP N      D  +F +   +R + + P W        FPSS G    L+                        D   V+R+++FL  R    YDE+   + ++HF  D        SK  R L+HFYAF+   D   D  +KR  RD LRY D + C A++V
Sbjct:   94 DIRGDTEFASPFKEEG-EVKYLTFEHDLGGWNNMRMAMETMVALAHAMGRTLVLLP-KTKI--FLQSEGKSYTDFFHLEALGKEHKGIDVVTMDEFLQQEAV-IGNLKDKNGNPAFPPGNRTNWDGDRHHFAQ--YLRKVAYTPEWRYENCIAAFPSSSGNSTSLKANHAAAQKMGAPKGEKWGKEPLAVDAPTVERMREFLLGRSLCIYDEEMQKAPIVHFMVD-------SSKKLRYLVHFYAFLFFEDWHHDLHLKRLIRDHLRYNDELQCAAARV 358          
BLAST of mRNA_E_fasciculatus_S2_contig7172.15350.1 vs.
Match: Uncharacterized (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CC39_9STRA)

HSP 1 Score: 120 bits (301), Expect = 2.570e-27
Identity = 80/240 (33.33%), Postives = 119/240 (49.58%), Query Frame = 1
Query:   46 GPAAKYVTFEPDCAGWNNVRMAFETVVVFAYVTGRTLVMPPIKQRLHGLPQSQAGERVGFFAYYQMEAVE--ELVDVISMQDFLGR---ESKNLGKLPPANLLEKPAD-LWNFFE---GDSVRNLTWPAWEVSKKALVFPSSPGKPLPLEDQGFV--QRLQDFLNTRQPVTYDEDAWNSKVIHFSGDCHDSRAEGSKNRRPLIHFYAFMLHADTLVDSRVKRFARDRLRYRDRIFCKASQ 732
            GP  +YVTFE D  GWNN+RM  ETVV FA +TGRTLV+PP+    HGL     GE +    YY  + +     +  ++  ++L R   ++  LG +P     E   D ++ F+E   G     L  P     + A+VFP   G+ + + D  +   +   D+L  R+ + YD     ++VIH+S          +   R L  ++ F+ H D  V+    R  RD + YRD +FCKASQ
Sbjct:  799 GPREQYVTFEMDWGGWNNIRMGVETVVAFASMTGRTLVLPPV----HGLYLQNGGEPLALTDYYSPDLINYPNRLATVTTHEYLARMDADNGGLGVMPDKPTAEMDHDDIYKFYEKVAGQYAAGL--PELNCGQTAIVFPDKAGEVIDMGDPRYSGNKDFTDWLAEREIIQYDSRWQEARVIHWS----------NARTRLLTIYHTFLYHMDPSVNRYQMRLIRDMMHYRDEVFCKASQ 1022          
BLAST of mRNA_E_fasciculatus_S2_contig7172.15350.1 vs.
Match: Uncharacterized (protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FHK3_9STRA)

HSP 1 Score: 119 bits (299), Expect = 2.590e-27
Identity = 84/286 (29.37%), Postives = 140/286 (48.95%), Query Frame = 1
Query:    1 EVPGDESWVSPYSSLGPAAKYVTFEPDCAGWNNVRMAFETVVVFAYVTGRTLVMPPIKQRLHGLPQSQAGER-----VGFFAYYQMEAVEELVDVISMQDFLGRESK--NLGK-----LPPANLLEKPADL------WNFFEGDSVRNLTWPA-WEVSKKALVFPSSPGKPLPLEDQGFVQRL----------QDFLNTRQPVT-------YDEDAWNSKVIHFSGDCHDSRA-----EGSKNRRPLIHFYAFMLHADTLVDSRVKRFARDRLRYRDRIFCKASQV 735
            ++P D  + SPY++ G + KY+TFEPD  GWNN+RM+ ET    A+  GR LV+P  +Q ++ L Q +  E        FF + ++ A  + V+VI+M++F+ RE    N+ K      PP+N  +    +      W++     +RN+T  + W+ SK   VFP  PGK    E +   + +          + ++N   PV         +  ++  ++  ++     S+      + +   R L+HFYAF+   D   D   KR+ RD LRY D I C A+++
Sbjct:   96 DIPSDSHFASPYANYGESPKYLTFEPDEGGWNNIRMSMETATALAHAMGRILVLP-FEQNMYLLKQDKKKENNRFTFKNFFPFDEISAEHKGVEVITMEEFMQREVMPGNIQKDGKVQFPPSNQTDWEGHIRDGKAFWHW-----LRNVTLASTWDFSKCTAVFPKEPGKKAADEMEKLYETMDMSEQSHGIFKKYINKPTPVNGTVTDRLKEMLSFRKEICLYNDQMQKSKVMHFMGDNNSGARLLVHFYAFLFFEDWEQDLWTKRYVRDHLRYIDEIQCAAAKI 375          
BLAST of mRNA_E_fasciculatus_S2_contig7172.15350.1 vs.
Match: Hypothetical (protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SM68_9STRA)

HSP 1 Score: 119 bits (297), Expect = 5.970e-27
Identity = 84/252 (33.33%), Postives = 116/252 (46.03%), Query Frame = 1
Query:   16 ESWVSPYSSLGPAAKYVTFEPDCAGWNNVRMAFETVVVFAYVTGRTLVMPPIKQRLHGLPQSQAGE---RVGFFAYYQMEAVEELVDVISMQDFLGRESKNLGKLPPANLLEKPADLWNFFEGDSVRNLTW--------PAWEVSKKALVFPSSPGKPLPLEDQGFVQRLQDFLNTRQPVTY-DEDAWNSKVIHFSGDCHDSRAEGSKNRRPLIHFYAFMLHADTLVDSRVKRFARDRLRYRDRIFCKASQV 735
            E+  SPY+  GP  KY+TFEPD  GWNN+RMAFET+ V A+ TGR LVMPP  QRL+ L  + AG      G  A+   +A+   ++VIS+  FL    KN         L + A          +R   W        P W   K+ + F      P    ++        F    + V Y D+    +  +H +          S   R   H+Y F+L  D + D   KRF RDRL+Y+D +FC A +V
Sbjct:  154 ETHASPYAGYGPKRKYLTFEPDAGGWNNIRMAFETLAVLAHATGRVLVMPP-PQRLYLLKVTHAGNTRAHHGVDAFLDFDALRGALEVISISQFLNETIKNDNTRRHLKGLAERATNGGVIARRQLRE--WMRRHADVEPRWAPLKECVAF-----GPCSTHNKYRHLTADKFCTHTRRVRYVDQRFAGAPWVHMT-------TNASHGYRMFTHWYTFLLFDDGVTDLYYKRFGRDRLKYKDEVFCAAGRV 390          
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7172.15350.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Uncharacterized4.620e-16996.33protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
GDP-fucose5.390e-14898.57protein O-fucosyltransferase, family GT65 n=1 Tax=... [more]
Fucosyltransferase1.120e-4942.74n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U3X1_... [more]
Uncharacterized1.460e-3235.04protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A48... [more]
Uncharacterized8.700e-3036.33protein n=1 Tax=Tribonema minus TaxID=303371 RepID... [more]
Hypothetical3.920e-2932.40protein n=1 Tax=Aplanochytrium stocchinoi TaxID=21... [more]
Hypothetical2.490e-2831.90protein n=1 Tax=Trieres chinensis TaxID=1514140 Re... [more]
Uncharacterized2.570e-2733.33protein n=1 Tax=Tribonema minus TaxID=303371 RepID... [more]
Uncharacterized2.590e-2729.37protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 ... [more]
Hypothetical5.970e-2733.33protein n=1 Tax=Pelagomonas calceolata TaxID=35677... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7172contigE_fasciculatus_S2_contig7172:5024..7616 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score427.9
Seed ortholog evalue3.2e-117
Seed eggNOG ortholog2880.D7FR32
Model size752
Hectar predicted targeting categoryother localisation
Exons4
EggNOG free text desc.GDP-fucose protein O-fucosyltransferase
EggNOG OGs2B2NM@1,2S0D4@2759
Ec32 ortholog descriptionGDP-fucose protein O-fucosyltransferase, family GT65
Ec32 orthologEc-09_003680.1
Cds size750
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842380.0540593-CDS-E_fasciculatus_S2_contig7172:5023..52631696842380.0540593-CDS-E_fasciculatus_S2_contig7172:5023..5263Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7172 5024..5263 +
1696842380.066404-CDS-E_fasciculatus_S2_contig7172:5411..55431696842380.066404-CDS-E_fasciculatus_S2_contig7172:5411..5543Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7172 5412..5543 +
1696842380.0777764-CDS-E_fasciculatus_S2_contig7172:6657..68011696842380.0777764-CDS-E_fasciculatus_S2_contig7172:6657..6801Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7172 6658..6801 +
1696842380.0924678-CDS-E_fasciculatus_S2_contig7172:7382..76161696842380.0924678-CDS-E_fasciculatus_S2_contig7172:7382..7616Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7172 7383..7616 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7172.15350.1prot_E_fasciculatus_S2_contig7172.15350.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7172 5024..7616 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7172.15350.1

>prot_E_fasciculatus_S2_contig7172.15350.1 ID=prot_E_fasciculatus_S2_contig7172.15350.1|Name=mRNA_E_fasciculatus_S2_contig7172.15350.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=250bp
EVPGDESWVSPYSSLGPAAKYVTFEPDCAGWNNVRMAFETVVVFAYVTGR
TLVMPPIKQRLHGLPQSQAGERVGFFAYYQMEAVEELVDVISMQDFLGRE
SKNLGKLPPANLLEKPADLWNFFEGDSVRNLTWPAWEVSKKALVFPSSPG
KPLPLEDQGFVQRLQDFLNTRQPVTYDEDAWNSKVIHFSGDCHDSRAEGS
KNRRPLIHFYAFMLHADTLVDSRVKRFARDRLRYRDRIFCKASQVRSEG*
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mRNA from alignment at E_fasciculatus_S2_contig7172:5024..7616+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7172.15350.1 ID=mRNA_E_fasciculatus_S2_contig7172.15350.1|Name=mRNA_E_fasciculatus_S2_contig7172.15350.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=2593bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7172:5024..7616+ (Ectocarpus fasciculatus EfasUO2)
GAGGTCCCCGGCGACGAGAGTTGGGTAAGCCCCTACTCGAGCCTCGGACC TGCGGCGAAATACGTTACGTTTGAGCCAGACTGTGCCGGTTGGAACAACG TGCGAATGGCCTTCGAGACCGTGGTCGTGTTCGCGTATGTCACCGGGAGG ACTTTGGTGATGCCCCCCATCAAGCAGCGCCTCCATGGGTTGCCGCAGTC GCAGGCCGGAGAGCGGGTGGGATTTTTCGCCTACTATCAGGTGCGTTCTT GTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTGGTGGTGGTCGTTGTTGT TGTTTTTGTTGTTGGTGTTTTGAGCGCCGCTGTTGCTTTGCAGGCGTTAA TTTCTCCGTCTTGTATCCACTATTTGTTGGTTGGTCAGATGGAGGCCGTG GAGGAGCTCGTGGACGTGATATCCATGCAGGACTTCCTGGGACGGGAGTC GAAGAATCTGGGAAAGCTTCCTCCGGCTAACCTGCTCGAGAAACCGGCGG ACCTGTGGAATTTCTTCGAGGTGGGTGTGAAGGGTAGGTTCAAGAATATG ACCAACAAAGAAGTTAACCGTAGGTGTCACCATATAAGATATCACACCCC CTGGGCCGATCTCCAAAGCTCGATTACTCCACAGCAGGAGGAGTGGCGGT GGCGGAAATGGCGGAATTGGCACTGTCTCGTCGAGAGCTCTCCGAACATG TGTCATGTCATTTTAATGTCATTTTATTGCGGTATCCTCTTCGTCGTGGA ACAAGAGAGCTTTGAAGGTTTGAAATTCGGCACAGGGGGTGTGGTATCTT GCGCAACCTACGGTCTTCCTCCTATTGTAAGTCTTACTCTTGTGTGTCAC CACGGGTTGAAGCTCCTGCTGTACATGTGCTGGCAGAAATGCTGCGCGTG AAAAATATATGTTTTTCGACCTACTTTTATATTTGTCACACCCAATCAGA CCGAGTATCAGTCTGAGTGCTGATTTAACGTGATGAAAATATTACCGATG TGTTTAGTTATCACACCCACTCAGACCATGTAGTACTCAGTCACCGTTTG TGTTTTGCGTGTGTTGTCGTCCCCATGTATTCTGGCGCGCTGTAGTCACC GAATTCTTCGACCACCGCCCCTTGTTTTTACCTGCTGCATGAGTTTGTCT CTCAGACTCTGGAGATTCGATTCTGCTATGCTCCATGCTGCTTTTGAATG TCCTAATGCCTGCCAATGCTGCTACACGGGCGGCGGTTGCTTGCAGCCCT GCTGCTGCTGCTGCCACTGCTCCCTCCCCTGTTCGCGGGTATCACTATAT CACTAGTTCATCGTCCTCTCTCTTGATAATTAGCTCATCCCTCCTCCATT CCCCCCAGCACCTGAGTGTCACCCCCCGCTCCCCCTGTCGCGCTTGGTGA TGTGAGAGCCTGGTCCGGCGAGAACCCGGTAATGCTCCGTCCCGGCTTTG TAGGGATGCGAGGTCAATGGTCTAACGACTACGGCATGCACGGCTATGAG TATACCCCCCAAAGTATCTCAAAATCGCCTCCTAAATGCGAGGTCAATGG TCTAACGACTACGGCATGCTCGACTGTAAGTACCCCCCCTCCCCCCCTCC TCCTGCGGCACGCCTTCGGCCATGGAAACCCCAGGGCGACTCGGTGCGAA ACCTGACGTGGCCGGCTTGGGAGGTGTCGAAGAAGGCCTTGGTTTTCCCG TCGTCGCCGGGAAAGCCGCTGCCGCTTGAAGACCAGGGCTTCGTGCAGAG GTTGCAGGATTTTCTCAACACCAGACAGGTGAGTGCGGGTGCAAGCGTGT GCGTGTGTGTTTTTATTATTAGCATCGACCGCGCTAACCGGCTGATGATG CCAATGAATAGTCTAGACGTCAGTCATCTTCAGTGTGTGTGTTTACTGCT GGACTGCTGTTGACGTTGACCGCACCACGCCAAACGCCTTTTGTTTCTTT TTCTTGCACCCTCTCCGCCTTGGTTTTCCCTCGAACCGCACATGTTTTTT TTTTCCTTTTGGCCACTGTTTACTGTTTACTCCATCAGCTCTCACAGCAT TCCTGCCGGGTAGGGGCTCCAATCCGTGTGGGTACCTGACAATTTTTCTT CCTCTCCTCATTTTAGTTACTTTCCGAAGAGCGTTTTCCTATTTCTTCTT GCTCTCCTCATTTTAGTTACTTTCCAAGAGGTTTCAACGAGTGCTGTTGG TATCTTGTATACTTCATTCATCTTTTCATCTTTTCATATCCCCTTGTTTA CAGCCGATCAGTAAAGGACAAAAAAACCCCTGATGATTACGTCATCCATG TAATCACCTTGTGTCTTTCTTTCTTTTTTTGTCGTTTTTCTTTTTCTTTT TCTCCGCAGCCGGTGACCTACGACGAAGACGCGTGGAACTCGAAAGTCAT CCACTTCTCCGGAGATTGCCACGACAGCCGGGCGGAGGGGAGCAAAAATC GCCGCCCCCTGATCCACTTCTACGCTTTCATGCTGCACGCGGACACGCTG GTGGACTCGAGGGTGAAGCGCTTCGCGAGGGATCGACTCAGATATCGGGA CCGGATATTCTGCAAGGCCAGCCAGGTTAGAAGCGAAGGATAA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7172:5024..7616+

>mRNA_E_fasciculatus_S2_contig7172.15350.1 ID=mRNA_E_fasciculatus_S2_contig7172.15350.1|Name=mRNA_E_fasciculatus_S2_contig7172.15350.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=750bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7172:5024..7616+ (Ectocarpus fasciculatus EfasUO2)
GAGGTCCCCGGCGACGAGAGTTGGGTAAGCCCCTACTCGAGCCTCGGACC
TGCGGCGAAATACGTTACGTTTGAGCCAGACTGTGCCGGTTGGAACAACG
TGCGAATGGCCTTCGAGACCGTGGTCGTGTTCGCGTATGTCACCGGGAGG
ACTTTGGTGATGCCCCCCATCAAGCAGCGCCTCCATGGGTTGCCGCAGTC
GCAGGCCGGAGAGCGGGTGGGATTTTTCGCCTACTATCAGATGGAGGCCG
TGGAGGAGCTCGTGGACGTGATATCCATGCAGGACTTCCTGGGACGGGAG
TCGAAGAATCTGGGAAAGCTTCCTCCGGCTAACCTGCTCGAGAAACCGGC
GGACCTGTGGAATTTCTTCGAGGGCGACTCGGTGCGAAACCTGACGTGGC
CGGCTTGGGAGGTGTCGAAGAAGGCCTTGGTTTTCCCGTCGTCGCCGGGA
AAGCCGCTGCCGCTTGAAGACCAGGGCTTCGTGCAGAGGTTGCAGGATTT
TCTCAACACCAGACAGCCGGTGACCTACGACGAAGACGCGTGGAACTCGA
AAGTCATCCACTTCTCCGGAGATTGCCACGACAGCCGGGCGGAGGGGAGC
AAAAATCGCCGCCCCCTGATCCACTTCTACGCTTTCATGCTGCACGCGGA
CACGCTGGTGGACTCGAGGGTGAAGCGCTTCGCGAGGGATCGACTCAGAT
ATCGGGACCGGATATTCTGCAAGGCCAGCCAGGTTAGAAGCGAAGGATAA
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