mRNA_E_fasciculatus_S2_contig7151.15330.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7151.15330.1
Unique NamemRNA_E_fasciculatus_S2_contig7151.15330.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig7151.15330.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK59_9PHAE)

HSP 1 Score: 122 bits (307), Expect = 2.200e-27
Identity = 55/58 (94.83%), Postives = 56/58 (96.55%), Query Frame = 2 
Query:    2 KWYLMAGTWLSRWHAYVLSGTGEDLDFPTPSPGPITNGDIVDEDLVPIAGKVAGKHYR 175
            KWYLMAGTWLSRWHAYVLSGTGEDLDFPTPSPGPITNGDIVDE+LVPI G VAGKHYR
Sbjct: 1175 KWYLMAGTWLSRWHAYVLSGTGEDLDFPTPSPGPITNGDIVDENLVPIPGMVAGKHYR 1232
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7151.15330.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized2.200e-2794.83protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7151contigE_fasciculatus_S2_contig7151:3576..5007 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start1
Model size938
Hectar predicted targeting categoryother localisation
Exons2
Cds size297
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842377.6635678-UTR-E_fasciculatus_S2_contig7151:3575..35881696842377.6635678-UTR-E_fasciculatus_S2_contig7151:3575..3588Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig7151 3576..3588 +
1696842377.6981714-UTR-E_fasciculatus_S2_contig7151:4379..50071696842377.6981714-UTR-E_fasciculatus_S2_contig7151:4379..5007Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig7151 4380..5007 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842377.673712-CDS-E_fasciculatus_S2_contig7151:3588..37491696842377.673712-CDS-E_fasciculatus_S2_contig7151:3588..3749Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7151 3589..3749 +
1696842377.688218-CDS-E_fasciculatus_S2_contig7151:4243..43791696842377.688218-CDS-E_fasciculatus_S2_contig7151:4243..4379Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7151 4244..4379 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7151.15330.1prot_E_fasciculatus_S2_contig7151.15330.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7151 3589..4379 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7151.15330.1

>prot_E_fasciculatus_S2_contig7151.15330.1 ID=prot_E_fasciculatus_S2_contig7151.15330.1|Name=mRNA_E_fasciculatus_S2_contig7151.15330.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=99bp
MAGTWLSRWHAYVLSGTGEDLDFPTPSPGPITNGDIVDEDLVPIAGKVAG
KHYRGAMIEVWSYLHERYGGGPVICRSDPDGLYETRTPNHNESSPPLP*
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mRNA from alignment at E_fasciculatus_S2_contig7151:3576..5007+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7151.15330.1 ID=mRNA_E_fasciculatus_S2_contig7151.15330.1|Name=mRNA_E_fasciculatus_S2_contig7151.15330.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1432bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7151:3576..5007+ (Ectocarpus fasciculatus EfasUO2)
AAAGTGGTACCTCATGGCAGGGACGTGGCTGAGCAGATGGCACGCGTACG
TCCTCTCCGGGACGGGCGAGGACCTGGACTTCCCCACGCCGTCGCCGGGG
CCGATAACGAACGGCGACATCGTTGACGAGGATCTTGTCCCGATAGCAGG
AAAAGTGGCGGGGAAACACTACCGGTGAGGGAGGGAACGGGGGGCGGGGG
GTCCTTGTAGCCGTAGTTGTGAGACGATTGACCTCATATCCCTATGTACA
AAACCGGGGCGGGACACGCCGGGTTTTTACCGGCCGAGGGGGGGGGGGGG
GTACAGAGGGCAGGAGGTGTTGTGCACCTACTTTTTTCTATGGTCCTGAA
GCTTGACAACTCCCATCGCTTTTTTTATTCGTAACAATTAGCTCACTTTT
GCTGCTGAAAACGGGCTGGCTCATTGGGTCGTGTTTTGGGGAAAGTATGA
ACAGGGTTATAGCCGGTGCGGGGGGGAAGATCGACCAGGCAGGAGACGAT
GCGGTTGTTGCCAGGCGAGGGTACGTGGGGGAACAGCAGTTGTAGCGAAG
AGGGGCCATAAACCATTCGTGCACGAACATTTTTTTCTGAAAGCACCGGC
CGCACGCTCTAGGTTCAACGTGTCGGCGCCTCCTCATTTCTCTGTTGTTA
TTTTTTTGCATCCCTCAGAGGCGCCATGATCGAGGTGTGGAGCTACCTTC
ACGAGCGTTACGGAGGGGGGCCCGTGATATGCCGGAGCGACCCCGACGGC
CTGTACGAGACCAGGACACCGAACCACAACGAATCGTCGCCACCATTGCC
GTAGCCTTGAGCGATGAATGAGAGTTGGTCTCACGCACCCGCGTCCCCGA
AAGTTCCGGCCGGTACTTGATTTTGACACCGCTTCTGGAGGAAGGGAGAC
GTTCGTCATTGCTGTTTTTGCGCTGCCTATCATGTGGAAAAGCTTGAGCT
GTGTACAGGTAGGAAATCGCGAGGCTTCCTGGAGCAGTTGGGAGGAAAGC
GTGTGTCCCTTCCGACCCAGATCTCTCCACCTTTGCCGCACGGCGCGTAG
GAAAACTCAAGTCTCGATCGGGCCGCCAAGTGCGTGCGTTTGATTTCGGC
ACAGACGGGGGCGGCGCTGCAGAGAGAGACCGAGGTCGTTTTACCAGCGA
TTGGTTGAGCGCCGCTGGGAAGAAATTCACACTGGTGGGTTAAGAAGAAG
CGGTTCTGGCCCTACTCCGAATTGGTGTGATTTGCGGCGGGCTGTTCCCT
CGTGTGGCGAGGGTTTGGCTCTTGCGCAATCAATCAGCCGTAGGGGGGGC
ACCGAGTGTATGTTTCCTCGCCGCTTGGTCTTGGGGAGCAACGCCTGTGG
CCTGTCGGTGCGGTGGCACTTGCGGATCGTCGGCAGATCGTCGACGAAGA
GGACAGAGCTCGACGAGTGGAAGGCCGAAACA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7151:3576..5007+

>mRNA_E_fasciculatus_S2_contig7151.15330.1 ID=mRNA_E_fasciculatus_S2_contig7151.15330.1|Name=mRNA_E_fasciculatus_S2_contig7151.15330.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=297bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7151:3576..5007+ (Ectocarpus fasciculatus EfasUO2)
ATGGCAGGGACGTGGCTGAGCAGATGGCACGCGTACGTCCTCTCCGGGAC
GGGCGAGGACCTGGACTTCCCCACGCCGTCGCCGGGGCCGATAACGAACG
GCGACATCGTTGACGAGGATCTTGTCCCGATAGCAGGAAAAGTGGCGGGG
AAACACTACCGAGGCGCCATGATCGAGGTGTGGAGCTACCTTCACGAGCG
TTACGGAGGGGGGCCCGTGATATGCCGGAGCGACCCCGACGGCCTGTACG
AGACCAGGACACCGAACCACAACGAATCGTCGCCACCATTGCCGTAG
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