mRNA_E_fasciculatus_S2_contig7151.15328.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7151.15328.1
Unique NamemRNA_E_fasciculatus_S2_contig7151.15328.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig7151.15328.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK59_9PHAE)

HSP 1 Score: 211 bits (536), Expect = 7.870e-61
Identity = 104/106 (98.11%), Postives = 104/106 (98.11%), Query Frame = 2 
Query:   59 GGTGGSNSWVYMSKAWALKWATSAYPGPVSNHHVVCRHGRVKPNVGVKRATKEMVAVPRGVHRSLVNRYGPRTPAGVAGKPSPLDATTGGVKVAVAPGESADRISV 376
            GGTGGSNSWVYMSKAWALKWATSAYPGPVSNHHVVCRHGRVKPNVGVKRA KEMVAVPRGVHRSLVNRYGPRTPA VAGKPSPLDATTGGVKVAVAPGESADRISV
Sbjct:  856 GGTGGSNSWVYMSKAWALKWATSAYPGPVSNHHVVCRHGRVKPNVGVKRAAKEMVAVPRGVHRSLVNRYGPRTPAVVAGKPSPLDATTGGVKVAVAPGESADRISV 961
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BLAST of mRNA_E_fasciculatus_S2_contig7151.15328.1 vs.
Match: Ubiquitin (carboxyl-terminal hydrolase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS72_ECTSI)

HSP 1 Score: 108 bits (269), Expect = 7.600e-25
Identity = 57/61 (93.44%), Postives = 57/61 (93.44%), Query Frame = 2 
Query:  194 GVKRATKEMVAVPRGVHRSLVNRYGPRTPAGVAGKPSPLDATTGGVKVAVAPGESADRISV 376
            G   ATKEMVAVPRGVHRSLVNRYGPRTPA VAGKPSPLDATTGGVKVAVAPGESADRISV
Sbjct:  863 GSNSATKEMVAVPRGVHRSLVNRYGPRTPAVVAGKPSPLDATTGGVKVAVAPGESADRISV 923
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7151.15328.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized7.870e-6198.11protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Ubiquitin7.600e-2593.44carboxyl-terminal hydrolase n=1 Tax=Ectocarpus sil... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7151contigE_fasciculatus_S2_contig7151:89..815 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop0
Start0
Model size378
Hectar predicted targeting categoryother localisation
Exons2
Cds size378
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842377.5731018-CDS-E_fasciculatus_S2_contig7151:88..2921696842377.5731018-CDS-E_fasciculatus_S2_contig7151:88..292Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7151 89..292 +
1696842377.5886986-CDS-E_fasciculatus_S2_contig7151:641..8151696842377.5886986-CDS-E_fasciculatus_S2_contig7151:641..815Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7151 642..815 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7151.15328.1prot_E_fasciculatus_S2_contig7151.15328.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7151 89..815 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7151.15328.1

>prot_E_fasciculatus_S2_contig7151.15328.1 ID=prot_E_fasciculatus_S2_contig7151.15328.1|Name=mRNA_E_fasciculatus_S2_contig7151.15328.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=126bp
RYSTAKGPRAAAGVRVGERGGHGGFQLVGLHVEGVGAQVGYERVPRPGVE
SPRGVPPRQGQAKCRGQEGYEGDGCRPARGPQVPGEPVRSAYPGGGGGKA
LAAGRYDGRREGGGGAGGVGGQDQRR
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mRNA from alignment at E_fasciculatus_S2_contig7151:89..815+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7151.15328.1 ID=mRNA_E_fasciculatus_S2_contig7151.15328.1|Name=mRNA_E_fasciculatus_S2_contig7151.15328.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=727bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7151:89..815+ (Ectocarpus fasciculatus EfasUO2)
CGTTACTCGACGGCGAAAGGGCCGAGGGCGGCGGCCGGGGTCCGAGTCGG
AGAGCGAGGGGGGCACGGGGGGTTCCAACTCGTGGGTTTACATGTCGAAG
GCGTGGGCGCTCAAGTGGGCTACGAGCGCGTACCCCGGCCCGGTGTCGAA
TCACCACGTGGTGTGCCGCCACGGCAGGGTCAAGCCAAATGTCGGGGTCA
AGAGGTGAGGGGGCTGGGGACTGGAGGGAGGGAGAGAGAGGGGCGTTGAG
ACACTCTATGGAGGACCAAGACCGTGATGAGGATTGAGGAGGATGATGAG
CTCCGTTAGCTGCTACGAGTACCACCCTATTATCTGCAGCAGTAGAACTT
GATGTAGTCGCGGTGGTAGCAGGTCCAGACAACACCCCGAAGCCGACGTA
AACTCAACACGCGGAACCTACGTATACCACCCCCTACCCGTGCGCACACG
CGCTCGCCCCAACCCCTTGCCCTCTCTCTCTCTCTCAACGCACCCGCCCT
TCTTTTTGTGTCGCTGCTGATGACGACCACCCTACTGCTCTGCACCGTCT
CAGGGCTACGAAGGAGATGGTTGCCGTCCCGCGCGGGGTCCACAGGTCCC
TGGTGAACCGGTACGGTCCGCGTACCCCGGCGGGGGTGGCGGGAAAGCCC
TCGCCGCTGGACGCTACGACGGGCGGCGTGAAGGTGGCGGTGGCGCCGGG
GGAGTCGGCGGACAGGATCAGCGTCGG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7151:89..815+

>mRNA_E_fasciculatus_S2_contig7151.15328.1 ID=mRNA_E_fasciculatus_S2_contig7151.15328.1|Name=mRNA_E_fasciculatus_S2_contig7151.15328.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=378bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7151:89..815+ (Ectocarpus fasciculatus EfasUO2)
CGTTACTCGACGGCGAAAGGGCCGAGGGCGGCGGCCGGGGTCCGAGTCGG
AGAGCGAGGGGGGCACGGGGGGTTCCAACTCGTGGGTTTACATGTCGAAG
GCGTGGGCGCTCAAGTGGGCTACGAGCGCGTACCCCGGCCCGGTGTCGAA
TCACCACGTGGTGTGCCGCCACGGCAGGGTCAAGCCAAATGTCGGGGTCA
AGAGGGCTACGAAGGAGATGGTTGCCGTCCCGCGCGGGGTCCACAGGTCC
CTGGTGAACCGGTACGGTCCGCGTACCCCGGCGGGGGTGGCGGGAAAGCC
CTCGCCGCTGGACGCTACGACGGGCGGCGTGAAGGTGGCGGTGGCGCCGG
GGGAGTCGGCGGACAGGATCAGCGTCGG
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