mRNA_E_fasciculatus_S2_contig7146.15322.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7146.15322.1
Unique NamemRNA_E_fasciculatus_S2_contig7146.15322.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig7146.15322.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXH1_ECTSI)

HSP 1 Score: 278 bits (711), Expect = 4.880e-93
Identity = 148/185 (80.00%), Postives = 160/185 (86.49%), Query Frame = 1 
Query:    1 MAVSVETTRGFQDVQQAKLYEAIADNHKASSGAIEEISTAFQGLMQMVSKPGIP-VSASRPLLDTEKATASASQGTANIDSGEIDQADKIKLGGMAPHPSSSTSLATRMPSMVCGGSAEHLGSMIMTDIDESPVLAKTFSDATSFGYDFTTIACTTSTPAAISVNMSLPHSSFSTDGTFDGSRTE 552
            MA  VETTRGFQDVQQAKLYEAIADNHKASSGAIEEIS AF+GLMQMVSKPG P VSASRPLLD+EK  ASA QG+A  DSG+ID  DKIK  GMAPHPSS+ S AT +P M C GS + LGSM  TD DESP+LAKTFSD+TSFGYDF+TIACTTSTPAAISVNMSLPH+SFSTDGTFDGSRT+
Sbjct:    1 MAAGVETTRGFQDVQQAKLYEAIADNHKASSGAIEEISVAFEGLMQMVSKPGTPPVSASRPLLDSEKVAASAFQGSAQADSGKIDHEDKIKQVGMAPHPSSNASSATHIPPMACEGSTDRLGSMTTTDSDESPILAKTFSDSTSFGYDFSTIACTTSTPAAISVNMSLPHASFSTDGTFDGSRTD 185
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7146.15322.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized4.880e-9380.00protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7146contigE_fasciculatus_S2_contig7146:1909..3007 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop0
Start1
Model size552
Hectar predicted targeting categoryother localisation
Exons3
Cds size552
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842376.8199334-CDS-E_fasciculatus_S2_contig7146:1908..20711696842376.8199334-CDS-E_fasciculatus_S2_contig7146:1908..2071Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7146 1909..2071 -
1696842376.8306022-CDS-E_fasciculatus_S2_contig7146:2364..27051696842376.8306022-CDS-E_fasciculatus_S2_contig7146:2364..2705Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7146 2365..2705 -
1696842376.8406587-CDS-E_fasciculatus_S2_contig7146:2959..30071696842376.8406587-CDS-E_fasciculatus_S2_contig7146:2959..3007Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7146 2960..3007 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7146.15322.1prot_E_fasciculatus_S2_contig7146.15322.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7146 1909..3007 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7146.15322.1

>prot_E_fasciculatus_S2_contig7146.15322.1 ID=prot_E_fasciculatus_S2_contig7146.15322.1|Name=mRNA_E_fasciculatus_S2_contig7146.15322.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=184bp
MAVSVETTRGFQDVQQAKLYEAIADNHKASSGAIEEISTAFQGLMQMVSK
PGIPVSASRPLLDTEKATASASQGTANIDSGEIDQADKIKLGGMAPHPSS
STSLATRMPSMVCGGSAEHLGSMIMTDIDESPVLAKTFSDATSFGYDFTT
IACTTSTPAAISVNMSLPHSSFSTDGTFDGSRTE
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mRNA from alignment at E_fasciculatus_S2_contig7146:1909..3007-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7146.15322.1 ID=mRNA_E_fasciculatus_S2_contig7146.15322.1|Name=mRNA_E_fasciculatus_S2_contig7146.15322.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1099bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7146:1909..3007- (Ectocarpus fasciculatus EfasUO2)
ATGGCTGTGAGCGTGGAAACCACTCGAGGCTTCCAGGACGTTCAACAGGT
GCGCTACATTCTTCATTAGAGTTCGCAGGATACTGCTAAATCCGACGTAT
AGTTCACCATGTTACACGTGTCAACAACGAAGCGGGGTAGGGACGCGTAT
CGTTGTCCGTCACACGTTGGTATGCAAACCCTAGTCCTAATATTGAAAAC
TCGCAGATTCAAGGGAACTCCCAAGCACACTCATAGCACATGTACGTTGC
GCGGCATCATTAGCACGGTTCACGTACGCCGTCTTGCCTTTCTAACCCCC
AGGCGAAGCTGTACGAAGCCATCGCGGACAACCACAAGGCGTCGTCGGGA
GCTATCGAGGAAATATCGACGGCCTTCCAAGGGCTGATGCAGATGGTGTC
CAAGCCAGGTATCCCGGTGTCGGCATCGCGCCCACTACTCGATACCGAGA
AGGCGACGGCCTCGGCTTCCCAAGGCACAGCAAACATCGACTCTGGCGAG
ATCGACCAGGCGGACAAGATCAAGCTGGGGGGGATGGCGCCCCACCCCTC
GTCGAGCACGTCGTTGGCCACACGCATGCCGTCCATGGTTTGTGGAGGCA
GCGCGGAGCACCTCGGCAGCATGATCATGACGGACATCGATGAGTGAGTG
TGTGCTGGATCACATACATCACGTATTGTCGTTTTCACTTCTCTGGTGCT
AATTTGGCTGCAACCACGTTGCGAACTCTACTGTTTGTCCCACTCTTGGT
GGACATCGATGTTCAGAATGCAGCATGTTTTACATGACGATTCCGGCAAC
AGGAGGATAACCGCTGGTGTGAGACTGAGTGAGTGCGAGAACGGCATGTG
TTATGTTTTCCGTGACGCCCCTCTGTCTTAATCCTCCAGTCCCTGGCCGA
CATACTTTCCTTCTGCCTCATTCGCCTCCCAAGCAGATCGCCCGTCCTCG
CCAAGACGTTCTCGGATGCCACCAGCTTCGGATACGATTTCACCACGATC
GCCTGCACCACATCGACTCCGGCAGCAATTTCGGTGAACATGTCCCTTCC
TCACTCTTCTTTCAGCACAGACGGCACCTTCGACGGAAGCCGCACGGAA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7146:1909..3007-

>mRNA_E_fasciculatus_S2_contig7146.15322.1 ID=mRNA_E_fasciculatus_S2_contig7146.15322.1|Name=mRNA_E_fasciculatus_S2_contig7146.15322.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=552bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7146:1909..3007- (Ectocarpus fasciculatus EfasUO2)
ATGGCTGTGAGCGTGGAAACCACTCGAGGCTTCCAGGACGTTCAACAGGC
GAAGCTGTACGAAGCCATCGCGGACAACCACAAGGCGTCGTCGGGAGCTA
TCGAGGAAATATCGACGGCCTTCCAAGGGCTGATGCAGATGGTGTCCAAG
CCAGGTATCCCGGTGTCGGCATCGCGCCCACTACTCGATACCGAGAAGGC
GACGGCCTCGGCTTCCCAAGGCACAGCAAACATCGACTCTGGCGAGATCG
ACCAGGCGGACAAGATCAAGCTGGGGGGGATGGCGCCCCACCCCTCGTCG
AGCACGTCGTTGGCCACACGCATGCCGTCCATGGTTTGTGGAGGCAGCGC
GGAGCACCTCGGCAGCATGATCATGACGGACATCGATGAATCGCCCGTCC
TCGCCAAGACGTTCTCGGATGCCACCAGCTTCGGATACGATTTCACCACG
ATCGCCTGCACCACATCGACTCCGGCAGCAATTTCGGTGAACATGTCCCT
TCCTCACTCTTCTTTCAGCACAGACGGCACCTTCGACGGAAGCCGCACGG
AA
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