mRNA_E_fasciculatus_S2_contig7145.15321.1 (mRNA) Ectocarpus fasciculatus EfasUO2
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Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig7145.15321.1 vs.
Match: Major (facilitator superfamily permease n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1X7_ECTSI) HSP 1 Score: 333 bits (853), Expect = 1.020e-101 Identity = 286/477 (59.96%), Postives = 309/477 (64.78%), Query Frame = 1
Query: 439 MGTGADDMVASAHAMSIGVGEVIGPMIGGFVVELLPRSPAFACEPDMPIVQLHDPIFQLAGELRPHQSSXXXXXXXXXXXXXDRLPGSDGERGQEELSDDIE-VYYPETTSADVAVDARQGEDIGNTETQEGENVVRTTGQEKK-KSRRLTLRSGEEQGXXXXXXXXXEDWIAVEFREGWTSTARLLGEDSHENEWVYKREEDALWMLLAEXXXXXKRARGKLRRGHPGDASSRRSASKPVEAGERRSDAGDRDDERELGQXXXXXXXXXRDSRALLERVGGRKTRRGRHRIRAKRERN-------------------HDAAGVTSSKGGEEAXXXXXXXXXXXXXXXXXXX-------VDGVGGLDGPGAGAGRPQEAGGGAADVEDLPVVGQALTAAAXXXXXGATQNVDAVDGDGGGGEGSCDSAFPLATTLLAWASGFAVLAMYRLLPLSAGGVGGGGG---KTAHGVV-LPA 1773
MGTGADDMVASAHAMSIGVGEVIGPMIGGFVVELLP SPAFACEPD+PIVQLHDPIFQLAGELRPH SSXXXXXXXXX E+G E+S+D E VY+PE +SAD+A DARQGED G+ + + GE+VVR TGQE+ KSR LT GEEQG EDWIAVEFREG T+T R SHENE V + XXXXX RARGKLR+GHP D+SS RSASKP EA RR DA RD ER+LGQ XXXXXX + RAL+ER RE + AA VTSSK G+E XXXXXXXXXXXXXXXXXXX VD GGL GP GAG P E G G D+E +PVVGQALT XXXXX GSCDSAFPLATTLLAWASGFAVLAMYR LP AGGVG K AHGVV LPA
Sbjct: 258 MGTGADDMVASAHAMSIGVGEVIGPMIGGFVVELLPTSPAFACEPDVPIVQLHDPIFQLAGELRPHLSSXXXXXXXXX------------EQGPGEVSEDAEEVYFPEISSADIAADARQGEDFGSADAKVGEDVVRVTGQEENNKSRLLTSHDGEEQGREQGRGEE-EDWIAVEFREGGTTTGRY----SHENEEVSRMLXXXXXXXXXXXXXXXXRARGKLRQGHPDDSSSTRSASKPAEAAGRRRDASGRDGERKLGQQXXXXXX---EGRALVERGXXXXXXXXXXXXXXXRENDAAAAAGGVVDLVDARDRLPSGAAAVTSSKAGKEXXXXXXXXXXXXXXXXXXXXXXXXXXGVDRAGGLGGPRGGAGLPLEMGSGENDIEYIPVVGQALTGXXXXXXXXXXXXXXXXXXXXXXXAGSCDSAFPLATTLLAWASGFAVLAMYRFLPSPAGGVGXXXXXXXKAAHGVVVLPA 714
BLAST of mRNA_E_fasciculatus_S2_contig7145.15321.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPD6_9PHAE) HSP 1 Score: 318 bits (815), Expect = 8.600e-99 Identity = 275/453 (60.71%), Postives = 299/453 (66.00%), Query Frame = 1
Query: 439 MGTGADDMVASAHAMSIGVGEVIGPMIGGFVVELLPRSPAFACEPDMPIVQLHDPIFQLAGELRPHQSSXXXXXXXXXXXXXDRLPGSDGERGQEELSDDIE-VYYPETTSADVAVDARQGEDIGNTETQEGENVVRTTGQEKK-KSRRLTLRSGEEQGXXXXXXXXXEDWIAVEFREGWTSTARLLGEDSHENEWVYKREEDALWMLLAEXXXXXKRARGKLRRGHPGDASSRRSASKPVEAGERRSDAGDRDDERELGQXXXXXXXXXRDSRALLERVGGRKTRRGRHRIRAKRERNHDAAGVTSSKGGEEAXXXXXXXXXXXXXXXXXXXVDGVGGLDGPGAGAGRPQEAGGGAADVEDLPVVGQALTAAAXXXXXGATQNVDAVDGDG-GGGEGSCDSAFPLATTLLAWASGFAVLAMYRLLPLSAGGVGGGG----GKTAHGVV-LPA 1773
MGTGADDMVASAHAMSIGVGEVIGPMIGGFVV+LLP SPAFACEP++PIVQLHDPIFQLAGE+RPH SS XXXXXXXXXXXX E+GQ+ELS+D E VY P +SAD+A DARQGED+G+ ET++GE+VV T QE+ KSR LTL GE XXXXXX EDWI VEFR+G ST RLLGEDSHE++ V + L XXXXX GKLR+G P K XXXXXXXXX LER GR+ RRGRHRIR+KRE XXXX XXXXX +DG GGL G GAG P E G G DVE LPVVGQALT A XXX Q+V AVDG G GGG GSCDSAFPLATTLLAWASGFAVLAMYRLLP AGGVGG G GK AHGVV LPA
Sbjct: 45 MGTGADDMVASAHAMSIGVGEVIGPMIGGFVVDLLPTSPAFACEPNVPIVQLHDPIFQLAGEIRPHLSSSXXXXXXXXXXXXXXXX----EQGQQELSEDAEAVYSPAISSADIAADARQGEDLGSAETKQGEDVVWVTRQEENNKSRLLTLHDGEX-XXXXXXXAEEEDWITVEFRQGGPSTGRLLGEDSHEDDGVSRM----LLXXXXXXXXXXXXXXGKLRQGQPXXXXXXXXXXKXXXXXXXXXXXXXXXX---XXXXXXXXXXXXXXXXXXLERGRGRRARRGRHRIRSKREXXXXXXXXXXXXX-XXXXXXXDPHGMVAVAXXXXXGLDGAGGLGGSRGGAGLPIEMGSGENDVEYLPVVGQALTGAGAAXXXXXXQSVGAVDGLGDGGGAGSCDSAFPLATTLLAWASGFAVLAMYRLLPSPAGGVGGVGXXVGGKAAHGVVVLPA 484
BLAST of mRNA_E_fasciculatus_S2_contig7145.15321.1 vs.
Match: MFS (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR06_9PHAE) HSP 1 Score: 176 bits (446), Expect = 2.090e-49 Identity = 89/91 (97.80%), Postives = 89/91 (97.80%), Query Frame = 2
Query: 11 GGGLAFWKVARNRGVLTGAFVTAYNYAVIGFLEVTLAPHLAQTLSTSPRSIGFVLVLPNVLYTLTAMKAEDIVDRQGARRTLLAGLCIMSM 283
GG LAFWKVARNRGVLTGAFVTAYNYAVIGFLEVTLAPHLAQTLSTSPRSIGF LVLPNVLYTLTAMKAEDIVDRQGARRTLLAGLCIMSM
Sbjct: 18 GGTLAFWKVARNRGVLTGAFVTAYNYAVIGFLEVTLAPHLAQTLSTSPRSIGFALVLPNVLYTLTAMKAEDIVDRQGARRTLLAGLCIMSM 108
BLAST of mRNA_E_fasciculatus_S2_contig7145.15321.1 vs.
Match: Major (facilitator superfamily domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CL52_9STRA) HSP 1 Score: 145 bits (366), Expect = 8.640e-33 Identity = 73/131 (55.73%), Postives = 98/131 (74.81%), Query Frame = 2
Query: 35 VARNRGVLTGAFVTAYNYAVIGFLEVTLAPHLAQTLSTSPRSIGFVLVLPNVLYTLTAMKAEDIVDRQGARRTLLAGLCIMSMSLLMSGPSPALAPALVTRGAARGAISVGLLAFQVGSALASVPAFTAMQ 427
VAR RGVL GA VTA N+ +IGFLE TL+PHLAQ L T+P+S+GF+ ++P++ Y+L A K E +V+ GARRT+L G ++S+SL + GP+PAL ++ A RGAI+ G+L FQVGSA+A VPAF MQ
Sbjct: 762 VARARGVLAGALVTAANFGLIGFLEATLSPHLAQALQTTPQSVGFIFIVPSITYSLMAAKTERVVEGFGARRTMLFGFAVLSISLFLFGPAPALDAVGLSPAAVRGAIAAGMLIFQVGSAMACVPAFAIMQ 892
BLAST of mRNA_E_fasciculatus_S2_contig7145.15321.1 vs.
Match: MFS-type (transporter SLC18B1-like n=1 Tax=Branchiostoma belcheri TaxID=7741 RepID=A0A6P4YTM3_BRABE) HSP 1 Score: 57.8 bits (138), Expect = 1.130e-5 Identity = 34/84 (40.48%), Postives = 51/84 (60.71%), Query Frame = 2
Query: 71 VTAYNYAVIGFLEVTLAPHLAQTLSTSPRSIGFVLVLPNVLYTLTAMKAEDIVDRQ-GARRTLLAGLCIMSMSLLMSGPSPALA 319
VT+ N + FL+ L P+L+ TSP SIG + VL +YTL A + DR+ AR ++ G+ ++++S+LM GPSP LA
Sbjct: 149 VTSCN---MSFLQPILEPYLSDQFKTSPTSIGLIFVLWGGVYTLAAPVWGFLADRKKAARLMIIGGMSVLTVSVLMIGPSPLLA 229 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7145.15321.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig7145.15321.1 >prot_E_fasciculatus_S2_contig7145.15321.1 ID=prot_E_fasciculatus_S2_contig7145.15321.1|Name=mRNA_E_fasciculatus_S2_contig7145.15321.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=592bp PGGGRGLGLLEGGEKSRGADRSFRDGLQLRRHRLPRGYSGAPPGSDAVNFback to top mRNA from alignment at E_fasciculatus_S2_contig7145:4186..7700- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig7145.15321.1 ID=mRNA_E_fasciculatus_S2_contig7145.15321.1|Name=mRNA_E_fasciculatus_S2_contig7145.15321.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=3515bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7145:4186..7700- (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7145:4186..7700- >mRNA_E_fasciculatus_S2_contig7145.15321.1 ID=mRNA_E_fasciculatus_S2_contig7145.15321.1|Name=mRNA_E_fasciculatus_S2_contig7145.15321.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=1776bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7145:4186..7700- (Ectocarpus fasciculatus EfasUO2)back to top |