mRNA_E_fasciculatus_S2_contig7145.15320.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7145.15320.1
Unique NamemRNA_E_fasciculatus_S2_contig7145.15320.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7145.15320.1 vs.
Match: Ribosomal_S7 (domain-containing protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067BKT3_SAPPC)

HSP 1 Score: 105 bits (261), Expect = 2.060e-28
Identity = 50/57 (87.72%), Postives = 57/57 (100.00%), Query Frame = 1 
Query:    1 GQALYLITTGARESSFRNIKTIAECLADEIINAARGSSNSYAIKKKDEIERVAKANR 171
            G+ALYL+TTGARE+SFRN+KTIAECLADE+INAA+GSSNSYAIKKKDE+ERVAKANR
Sbjct:   22 GEALYLLTTGAREASFRNVKTIAECLADELINAAKGSSNSYAIKKKDEVERVAKANR 78
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7145.15320.1 vs.
Match: Ribosomal_S7 (domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KWT8_9PHAE)

HSP 1 Score: 108 bits (270), Expect = 5.650e-28
Identity = 56/56 (100.00%), Postives = 56/56 (100.00%), Query Frame = 1 
Query:    4 QALYLITTGARESSFRNIKTIAECLADEIINAARGSSNSYAIKKKDEIERVAKANR 171
            QALYLITTGARESSFRNIKTIAECLADEIINAARGSSNSYAIKKKDEIERVAKANR
Sbjct:  178 QALYLITTGARESSFRNIKTIAECLADEIINAARGSSNSYAIKKKDEIERVAKANR 233
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7145.15320.1 vs.
Match: Ribosomal_S7 (domain-containing protein n=1 Tax=Zea mays TaxID=4577 RepID=C0PB04_MAIZE)

HSP 1 Score: 103 bits (258), Expect = 6.980e-28
Identity = 51/56 (91.07%), Postives = 56/56 (100.00%), Query Frame = 1 
Query:    4 QALYLITTGARESSFRNIKTIAECLADEIINAARGSSNSYAIKKKDEIERVAKANR 171
            QA+YL+TTGARES+FRNIKTIAECLADE+INAA+GSSNSYAIKKKDEIERVAKANR
Sbjct:   29 QAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 84
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7145.15320.1 vs.
Match: RPS5 (protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812XN14_SYMMI)

HSP 1 Score: 106 bits (265), Expect = 8.950e-28
Identity = 54/56 (96.43%), Postives = 56/56 (100.00%), Query Frame = 1 
Query:    4 QALYLITTGARESSFRNIKTIAECLADEIINAARGSSNSYAIKKKDEIERVAKANR 171
            QA+YL+TTGARESSFRNIKTIAECLADEIINAARGSSNSYAIKKKDEIERVAKANR
Sbjct:  126 QAIYLMTTGARESSFRNIKTIAECLADEIINAARGSSNSYAIKKKDEIERVAKANR 181
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7145.15320.1 vs.
Match: Ribosomal_S7 (domain-containing protein (Fragment) n=1 Tax=Cephalotus follicularis TaxID=3775 RepID=A0A1Q3D0W5_CEPFO)

HSP 1 Score: 104 bits (260), Expect = 1.210e-27
Identity = 52/56 (92.86%), Postives = 56/56 (100.00%), Query Frame = 1 
Query:    4 QALYLITTGARESSFRNIKTIAECLADEIINAARGSSNSYAIKKKDEIERVAKANR 171
            QALYL+TTGARES+FRNIKTIAECLADE+INAA+GSSNSYAIKKKDEIERVAKANR
Sbjct:   73 QALYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 128
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7145.15320.1 vs.
Match: Ribosomal_S7 (domain-containing protein n=1 Tax=Zea mays TaxID=4577 RepID=A0A804UBJ8_MAIZE)

HSP 1 Score: 103 bits (258), Expect = 1.790e-27
Identity = 51/56 (91.07%), Postives = 56/56 (100.00%), Query Frame = 1 
Query:    4 QALYLITTGARESSFRNIKTIAECLADEIINAARGSSNSYAIKKKDEIERVAKANR 171
            QA+YL+TTGARES+FRNIKTIAECLADE+INAA+GSSNSYAIKKKDEIERVAKANR
Sbjct:   62 QAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 117
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7145.15320.1 vs.
Match: 40S (ribosomal protein n=1 Tax=Actinidia chinensis var. chinensis TaxID=1590841 RepID=A0A2R6QRL5_ACTCC)

HSP 1 Score: 103 bits (258), Expect = 1.790e-27
Identity = 51/56 (91.07%), Postives = 56/56 (100.00%), Query Frame = 1 
Query:    4 QALYLITTGARESSFRNIKTIAECLADEIINAARGSSNSYAIKKKDEIERVAKANR 171
            QA+YL+TTGARES+FRNIKTIAECLADE+INAA+GSSNSYAIKKKDEIERVAKANR
Sbjct:   62 QAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 117
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7145.15320.1 vs.
Match: Ribosomal (protein 5B n=1 Tax=Zostera marina TaxID=29655 RepID=A0A0K9P735_ZOSMR)

HSP 1 Score: 106 bits (264), Expect = 1.860e-27
Identity = 53/56 (94.64%), Postives = 56/56 (100.00%), Query Frame = 1 
Query:    4 QALYLITTGARESSFRNIKTIAECLADEIINAARGSSNSYAIKKKDEIERVAKANR 171
            QALYLITTGARESSFRN+KTIAECLADE+INAA+GSSNSYAIKKKDEIERVAKANR
Sbjct:  141 QALYLITTGARESSFRNVKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 196
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7145.15320.1 vs.
Match: Ribosomal (protein S7 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZGP4_9STRA)

HSP 1 Score: 105 bits (263), Expect = 2.440e-27
Identity = 53/56 (94.64%), Postives = 56/56 (100.00%), Query Frame = 1 
Query:    4 QALYLITTGARESSFRNIKTIAECLADEIINAARGSSNSYAIKKKDEIERVAKANR 171
            QA+YL+TTGARESSFRNIKTIAECLADEIINA+RGSSNSYAIKKKDEIERVAKANR
Sbjct:  138 QAIYLLTTGARESSFRNIKTIAECLADEIINASRGSSNSYAIKKKDEIERVAKANR 193
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7145.15320.1 vs.
Match: (wild (Malaysian banana) hypothetical protein n=1 Tax=Musa acuminata subsp. malaccensis TaxID=214687 RepID=A0A804J980_MUSAM)

HSP 1 Score: 103 bits (258), Expect = 2.440e-27
Identity = 51/56 (91.07%), Postives = 56/56 (100.00%), Query Frame = 1 
Query:    4 QALYLITTGARESSFRNIKTIAECLADEIINAARGSSNSYAIKKKDEIERVAKANR 171
            QA+YL+TTGARES+FRNIKTIAECLADE+INAA+GSSNSYAIKKKDEIERVAKANR
Sbjct:   73 QAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 128
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7145.15320.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Ribosomal_S72.060e-2887.72domain-containing protein n=1 Tax=Saprolegnia para... [more]
Ribosomal_S75.650e-28100.00domain-containing protein n=2 Tax=Ectocarpus TaxID... [more]
Ribosomal_S76.980e-2891.07domain-containing protein n=1 Tax=Zea mays TaxID=4... [more]
RPS58.950e-2896.43protein n=1 Tax=Symbiodinium microadriaticum TaxID... [more]
Ribosomal_S71.210e-2792.86domain-containing protein (Fragment) n=1 Tax=Cepha... [more]
Ribosomal_S71.790e-2791.07domain-containing protein n=1 Tax=Zea mays TaxID=4... [more]
40S1.790e-2791.07ribosomal protein n=1 Tax=Actinidia chinensis var.... [more]
Ribosomal1.860e-2794.64protein 5B n=1 Tax=Zostera marina TaxID=29655 RepI... [more]
Ribosomal2.440e-2794.64protein S7 domain-containing protein n=1 Tax=Tribo... [more]
(wild2.440e-2791.07Malaysian banana) hypothetical protein n=1 Tax=Mus... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7145contigE_fasciculatus_S2_contig7145:452..625 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score109.4
Seed ortholog evalue5.8e-22
Seed eggNOG ortholog2880.D7G1X8
Preferred nameRPS5
Model size174
KEGG koko:K02989,ko:K18914
KEGG Pathwayko03010,map03010
KEGG ModuleM00177
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000028,GO:0000184,GO:0000956,GO:0002181,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005773,GO:0005774,GO:0005829,GO:0005840,GO:0005844,GO:0005886,GO:0005911,GO:0006139,GO:0006401,GO:0006402,GO:0006403,GO:0006405,GO:0006407,GO:0006412,GO:0006413,GO:0006450,GO:0006518,GO:0006605,GO:0006611,GO:0006612,GO:0006613,GO:0006614,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0006996,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009506,GO:0009507,GO:0009536,GO:0009719,GO:0009725,GO:0009735,GO:0009892,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0010605,GO:0010629,GO:0015031,GO:0015833,GO:0015931,GO:0015935,GO:0016020,GO:0016043,GO:0016070,GO:0016071,GO:0019222,GO:0019439,GO:0019538,GO:0019843,GO:0022607,GO:0022613,GO:0022618,GO:0022626,GO:0022627,GO:0030054,GO:0030312,GO:0030684,GO:0030686,GO:0031090,GO:0031503,GO:0031974,GO:0031981,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0034622,GO:0034641,GO:0034645,GO:0034655,GO:0042221,GO:0042254,GO:0042255,GO:0042274,GO:0042788,GO:0042886,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044428,GO:0044437,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0045047,GO:0045184,GO:0046483,GO:0046700,GO:0046907,GO:0048519,GO:0050657,GO:0050658,GO:0050789,GO:0050896,GO:0051029,GO:0051168,GO:0051169,GO:0051179,GO:0051234,GO:0051236,GO:0051641,GO:0051649,GO:0055044,GO:0060255,GO:0065003,GO:0065007,GO:0065008,GO:0070013,GO:0070727,GO:0070925,GO:0070972,GO:0071166,GO:0071426,GO:0071428,GO:0071702,GO:0071704,GO:0071705,GO:0071826,GO:0071840,GO:0071944,GO:0072594,GO:0072599,GO:0072657,GO:0090150,GO:0090304,GO:0097064,GO:0097159,GO:0098588,GO:0098805,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1990904
Exons1
EggNOG free text desc.rRNA binding
EggNOG OGsCOG0049@1,KOG3291@2759
EC1.18.1.6
Cds size174
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko01000,ko03011,ko03029
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842376.7065794-CDS-E_fasciculatus_S2_contig7145:451..6251696842376.7065794-CDS-E_fasciculatus_S2_contig7145:451..625Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7145 452..625 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7145.15320.1prot_E_fasciculatus_S2_contig7145.15320.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7145 452..625 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7145.15320.1

>prot_E_fasciculatus_S2_contig7145.15320.1 ID=prot_E_fasciculatus_S2_contig7145.15320.1|Name=mRNA_E_fasciculatus_S2_contig7145.15320.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=58bp
GQALYLITTGARESSFRNIKTIAECLADEIINAARGSSNSYAIKKKDEIE
RVAKANR*
back to top

mRNA from alignment at E_fasciculatus_S2_contig7145:452..625+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7145.15320.1 ID=mRNA_E_fasciculatus_S2_contig7145.15320.1|Name=mRNA_E_fasciculatus_S2_contig7145.15320.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=174bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7145:452..625+ (Ectocarpus fasciculatus EfasUO2)
GGTCAGGCTCTGTACCTGATCACCACCGGCGCGCGCGAGTCCTCCTTCCG
CAACATCAAGACCATCGCTGAGTGCCTCGCCGACGAGATCATCAACGCCG
CCCGCGGATCGTCGAACTCCTACGCCATCAAGAAGAAGGACGAGATCGAG
CGCGTGGCTAAGGCTAACCGGTAG
back to top

Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7145:452..625+

>mRNA_E_fasciculatus_S2_contig7145.15320.1 ID=mRNA_E_fasciculatus_S2_contig7145.15320.1|Name=mRNA_E_fasciculatus_S2_contig7145.15320.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=174bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7145:452..625+ (Ectocarpus fasciculatus EfasUO2)
GGTCAGGCTCTGTACCTGATCACCACCGGCGCGCGCGAGTCCTCCTTCCG
CAACATCAAGACCATCGCTGAGTGCCTCGCCGACGAGATCATCAACGCCG
CCCGCGGATCGTCGAACTCCTACGCCATCAAGAAGAAGGACGAGATCGAG
CGCGTGGCTAAGGCTAACCGGTAG
back to top