mRNA_E_fasciculatus_S2_contig7110.15289.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7110.15289.1
Unique NamemRNA_E_fasciculatus_S2_contig7110.15289.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7110.15289.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7110contigE_fasciculatus_S2_contig7110:3616..4295 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start1
Model size598
Hectar predicted targeting categoryother localisation
Exons2
Cds size348
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842373.3401592-UTR-E_fasciculatus_S2_contig7110:3615..36251696842373.3401592-UTR-E_fasciculatus_S2_contig7110:3615..3625Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig7110 3616..3625 -
1696842373.3725774-UTR-E_fasciculatus_S2_contig7110:4055..42951696842373.3725774-UTR-E_fasciculatus_S2_contig7110:4055..4295Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig7110 4056..4295 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842373.3553016-CDS-E_fasciculatus_S2_contig7110:3625..36961696842373.3553016-CDS-E_fasciculatus_S2_contig7110:3625..3696Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7110 3626..3696 -
1696842373.36375-CDS-E_fasciculatus_S2_contig7110:3778..40551696842373.36375-CDS-E_fasciculatus_S2_contig7110:3778..4055Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7110 3779..4055 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7110.15289.1prot_E_fasciculatus_S2_contig7110.15289.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7110 3626..4055 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7110.15289.1

>prot_E_fasciculatus_S2_contig7110.15289.1 ID=prot_E_fasciculatus_S2_contig7110.15289.1|Name=mRNA_E_fasciculatus_S2_contig7110.15289.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=116bp
MWCMLGSRKKQRRHPGRSPDKGGGSTKTLSPPTLHPALVTATYKGGHTRP
ATVADVLKNKYCIHRWTQIILVCYIREEKNKQADDTDVFSLVTGSRGRYQ
YKDTKRGTDISSHVL*
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mRNA from alignment at E_fasciculatus_S2_contig7110:3616..4295-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7110.15289.1 ID=mRNA_E_fasciculatus_S2_contig7110.15289.1|Name=mRNA_E_fasciculatus_S2_contig7110.15289.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=680bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7110:3616..4295- (Ectocarpus fasciculatus EfasUO2)
ACTGGCTGTGCCTTACAGCGCTCATCCATGCGGTCAGGGATTATTCAACC
AGTCCGTGCCATCAAATTTACTCCTTCCTTTGTCTTCATCTTGAGGACCC
GCGCCCGGGCATTTGGAAATTAGACGACGGCACGAGTAGACGGCCAAGAC
GGTTCACGGCAATACTTGACAGCCGAGCAAACAGCGGCAACGACAACGGC
AACGGCAACCAACCATGTCTGTTAACCGTCACGTACGTACATGTGGTGCA
TGCTTGGGTCGAGAAAAAAGCAAAGACGGCATCCGGGTCGGTCTCCTGAC
AAGGGTGGAGGGTCGACGAAAACACTCTCCCCACCTACACTACATCCGGC
TCTCGTTACGGCTACGTATAAGGGAGGGCATACACGGCCTGCTACTGTCG
CCGACGTTCTGAAAAATAAATATTGTATCCATCGATGGACACAGATTATC
TTGGTTTGTTATATCCGTGAAGAGAAGAACAAACAAGCCGATGATACCGA
CGTCTTTTCATTGGTCAGCCGGTTAGCGCAGTCGACGTTAATACTAAAAC
AAAAACACACACGCAAACACACTGAAACTAACGTCTTCTCATTGGTGAGC
CGGCTCGCGCGGTCGATACCAATATAAAGACACAAAAAGAGGCACAGACA
TCTCATCACACGTACTGTAAGAAGATAGTA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7110:3616..4295-

>mRNA_E_fasciculatus_S2_contig7110.15289.1 ID=mRNA_E_fasciculatus_S2_contig7110.15289.1|Name=mRNA_E_fasciculatus_S2_contig7110.15289.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=348bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7110:3616..4295- (Ectocarpus fasciculatus EfasUO2)
ATGTGGTGCATGCTTGGGTCGAGAAAAAAGCAAAGACGGCATCCGGGTCG
GTCTCCTGACAAGGGTGGAGGGTCGACGAAAACACTCTCCCCACCTACAC
TACATCCGGCTCTCGTTACGGCTACGTATAAGGGAGGGCATACACGGCCT
GCTACTGTCGCCGACGTTCTGAAAAATAAATATTGTATCCATCGATGGAC
ACAGATTATCTTGGTTTGTTATATCCGTGAAGAGAAGAACAAACAAGCCG
ATGATACCGACGTCTTTTCATTGGTCACCGGCTCGCGCGGTCGATACCAA
TATAAAGACACAAAAAGAGGCACAGACATCTCATCACACGTACTGTAA
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