mRNA_E_fasciculatus_S2_contig7095.15266.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7095.15266.1
Unique NamemRNA_E_fasciculatus_S2_contig7095.15266.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig7095.15266.1 vs.
Match: Replication (factor C subunit 1 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LND0_ECTSI)

HSP 1 Score: 466 bits (1198), Expect = 8.900e-146
Identity = 235/246 (95.53%), Postives = 243/246 (98.78%), Query Frame = 1 
Query:    1 QNQRIGPFDAARSILGGASRTPLRDRYELFFTDYSLLPLLIHQNYLSSLMQVDARVRSDVTAAASAAVSDADIISGKMRGDVQHWELLPAQAALNVRVGSIGGGSLGFPEFPKWLGNYSRENKRRRLLGELSTHLNAGVSGGTEAVRLSYIHFLKRLLTQPLREEGAAGAPACVALLEEYGLSRDDLFEVLPEFVLSGKGMKRPPLDVFGSLDSKTRSAVTRCYNAQAHKSQALAVALQAPKKAKK 738
            +NQRIGPFDAARSILGGASRTPLRDRYELFFTDYSLLPLL+HQNYLSSLMQVDA+VR++VTAAASAAVSDADIISGKMRGDVQHWELLPAQAALNVRVGS+GGGSLGFPEFPKWLGNYSRENKRRRLLGELSTHLNA VSGGTEAVRLSYIHFLKRLLTQPLREEGAAGAPACV LLEEYGLSRDDLFEVLPEFVLSGKGMKRPP D+FGSLDSKTRSAVTRCYN+QAHKSQALAVALQAPKKAKK
Sbjct:  696 KNQRIGPFDAARSILGGASRTPLRDRYELFFTDYSLLPLLVHQNYLSSLMQVDAKVRTEVTAAASAAVSDADIISGKMRGDVQHWELLPAQAALNVRVGSVGGGSLGFPEFPKWLGNYSRENKRRRLLGELSTHLNASVSGGTEAVRLSYIHFLKRLLTQPLREEGAAGAPACVDLLEEYGLSRDDLFEVLPEFVLSGKGMKRPPPDLFGSLDSKTRSAVTRCYNSQAHKSQALAVALQAPKKAKK 941
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7095.15266.1 vs.
Match: Hypothetical (protein n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WPH2_9STRA)

HSP 1 Score: 212 bits (539), Expect = 7.230e-57
Identity = 120/238 (50.42%), Postives = 156/238 (65.55%), Query Frame = 1 
Query:   10 RIGPFDAARSILGGASRTPLRDRYELFFTDYSLLPLLIHQNYLSSLMQV-DARVRSDVTAAASAAVSDADIISGKMRGDVQHWELLPAQAALNVRVGSIGGGSLGFPEFPKWLGNYSRENKRRRLLGELSTHLNAGVSGGTEAVRLSYIHFLKRLLTQPLREEGAAGAPACVALLEEYGLSRDDLFEVLPEFVLSGKGMKRPPLDVFGSLDSKTRSAVTRCYNAQAHKSQALAVALQA 720
            R+  FD  RSIL    +T L  R + FF DYSL+PLL+ QNY+ S+    +   +S   +AAS A+SD D+I   +R D Q+W LLP QA + VRVG+   G LGFP+FP+WLG  S  NKRRRLLG+L+ HL++ VSGG EAVRL+Y   L+R L  PL ++GA G    +A+L+EYG+SR+DLFE LPE  L G G      +    +DSKT+SA TR YN   H+SQA+A A QA
Sbjct:  139 RMTAFDGVRSILDPKDQT-LFQRQDSFFLDYSLVPLLVQQNYVDSIQSCHEMGDKSTRMSAASEALSDCDLIDSMLRRD-QNWSLLPFQAVMTVRVGTHTRGGLGFPKFPEWLGKNSTGNKRRRLLGDLAMHLSSAVSGGQEAVRLNYAPVLRRRLVSPLLQKGAEGVQETIAMLDEYGMSREDLFETLPELQLPGYG------EDLDKIDSKTKSAFTRKYNQGVHRSQAIAGAAQA 368
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BLAST of mRNA_E_fasciculatus_S2_contig7095.15266.1 vs.
Match: AAA (domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XZ23_AURAN)

HSP 1 Score: 171 bits (434), Expect = 7.010e-41
Identity = 102/242 (42.15%), Postives = 140/242 (57.85%), Query Frame = 1 
Query:    7 QRIGPFDAARSILGGASRTPLRDRYELFFTDYSLLPLLIHQNYLSSLM----------QVDARVRSDVTAAASAAVSDADIISGKMRGDVQHWELLPAQAALNVRVGSIGGGSLGFPEFPKWLGNYSRENKRRRLLGELSTHLNAGVSGGTEAVRLSYIHFLKRLLTQPLREEGAAGAPACVALLEEYGLSRDDLFEVLPEFVLSGKGMKRPPLDVFGSLDSKTRSAVTRCYNAQAHKSQAL 702
            QR+ PFD A+ IL    R    DR + FFTDYSL+PLL+  NY+++             VD ++      AA+A +SD D+I  ++  D Q W LL  +A+L VR G +  GS   P+F  W G  S   K +R  GEL+ HL + +SG  +AVR  Y+  L + +T+PL + GAAG    +A L+EYGLS+DDLFE LP+  L G   K P LD   +LD+K ++  T+ YNA  H SQAL
Sbjct:  382 QRVTPFDGAKIILSDVRRKSHFDRCDAFFTDYSLVPLLVQHNYVTAASAARDAQGKPCSVDEKLNR--LEAAAACLSDVDLIDRRVHAD-QEWGLLTTEASLTVRAGVLVDGSCMAPQFSAWFGKNSTTKKSKRQCGELALHLGSRISGTRDAVRRDYLPMLAKYVTRPLVDGGAAGVAETIARLDEYGLSKDDLFETLPDLQLGGA--KVPGLD---ALDTKVKTHFTKTYNAGTHGSQAL 615
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BLAST of mRNA_E_fasciculatus_S2_contig7095.15266.1 vs.
Match: P-loop (containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YT94_9STRA)

HSP 1 Score: 164 bits (416), Expect = 1.260e-38
Identity = 113/352 (32.10%), Postives = 158/352 (44.89%), Query Frame = 1 
Query:    1 QNQRIGPFDAARSILGGASRTPLRDRYELFFTDYSLLPLLIHQNYLSSLMQVDARVRSDVTAAASAAVSDADIISGKMRGDVQHWELLPAQAALNVRVGSIGGGSLGFPEFPKWLGNYSRENKRRRLLGELSTHLNAG--------------------VSGGTEAVRLSYIH--------------------------------FLKRLLTQPLREEGAAGAPACVALLEEYGLSRDDLFEVLPEFVLSGKGM-----------------------------------------KRPPL--------------DVFGSLDSKTRSAVTRCYNAQAHKSQALAVALQAPKKAK 735
            ++QR+  FD AR I    S  P  +RYE FFTDY L+PLL+ QN+  ++ + +        A A+ A+SDA++    +RGDV HWELLP  AAL++RVG    G +GFP FP+WLG  S   KRRRL+ E++TH+NA                     V+   EAV L Y+                                  L R++T+PLR  GA G    +A+L+EYGLSRDDL E + +  L G  +                                          +PP+              D  G + +  ++A+TR YN+  H SQAL   + APK+AK
Sbjct:  314 KSQRVSAFDGARMIFQTKS-IPQAERYEAFFTDYGLVPLLVQQNWPDAIAKSNKATMMQRMARAADAISDAELAGSMVRGDVNHWELLPLYAALHLRVGLECDGYIGFPGFPQWLGKNSAATKRRRLVAEINTHMNARQARTPSPDNDHLPLESLLSLVNAEREAVWLDYVSSSVLSVRLIVIQSEREKRVXXXXXXXXXXXVPVLTRVITEPLRSAGADGVGEAMAMLDEYGLSRDDLLESMADLTLKGTRVFIVPIHTCAVRHALGVVHRQGANDFNLSSPIHAYLYMYIEVPKPPVPLAMRATLRRQGTRDYIGEVSTAAKTALTRAYNSTTHTSQALVDEISAPKRAK 664
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BLAST of mRNA_E_fasciculatus_S2_contig7095.15266.1 vs.
Match: Replication (factor C subunit 1 n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812KXV0_9DINO)

HSP 1 Score: 152 bits (383), Expect = 4.760e-34
Identity = 92/242 (38.02%), Postives = 130/242 (53.72%), Query Frame = 1 
Query:   10 RIGPFDAARSILGGASRTPLRDRYELFFTDYSLLPLLIHQNYLSSLMQVDARVRSDVTAA---ASAAVSDADIISG--KMRGDVQHWELLPAQAALNVRVGSIGGGSLGFPEFPKWLGNYSRENKRRRLLGELSTHLNAGVSGGTEAVRLSYIHFLKRLLTQPLREEGAAGAPACVALLEEYGLSRDDLFE---VLPEFVLSGKG---MKRPPLDVFGSLDSKTRSAVTRCYNAQAHKSQAL 702
            R+  FD  +++      +   +RY  FF DY L+PLL+ Q    S+        +   A    A+ A++ +D++S   +MRG    W LL + AA+NV+      GS+ FP FP+W G  S   KRRRLLGELS HLN  VSGG++++R+ Y+  LK     P+ E+GA G P  +A+L+ YGLS+ DL E     P F L        K    D F  +    +S +TR YNA  H+SQAL
Sbjct:  563 RLNGFDVTKTLFSDVRSSTFTERYNSFFVDYDLIPLLVQQAMPQSVQTPRGEAPTSKLARMADAADAIALSDVMSNCVRMRGQ---WSLLTSVAAMNVKAAYHASGSVAFPGFPEWFGKNSTMGKRRRLLGELSMHLNHRVSGGSQSLRMHYMETLKSAFYAPMLEKGADGVPDTIAMLDSYGLSKQDLTESCHAWPFFTLRWLQEFQFKGITTDWFARVPGAVKSKLTRAYNASTHRSQAL 801
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BLAST of mRNA_E_fasciculatus_S2_contig7095.15266.1 vs.
Match: Replication (factor C subunit 1 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GMW3_9STRA)

HSP 1 Score: 150 bits (380), Expect = 1.110e-33
Identity = 91/240 (37.92%), Postives = 130/240 (54.17%), Query Frame = 1 
Query:    1 QNQRIGPFDAARSILGGASRTPLRD-RYELFFTDYSLLPLLIHQNYLSSLMQVDARVRSDVT-----AAASAAVSDADIISGKMRGDVQHWELLPAQAALNVRVGSIGGGSLGFPEFPKWLGNYSRENKRRRLLGELSTHLNAGVSGGTEAVRLSYIHFLKRLLTQPLREEGAAGAPACVALLEEYGLSRDDLFEVLPEFVLSGKGMKRPPLDVFGSLDSKTRSAVTRCYNAQAHKSQAL 702
            Q   +  FDAA  + G AS+    D RY  FF DY L+PL++ +NY  S+        S +      +AA+ A  DADI+S ++RG  Q W LLP  AAL++RV +I GGS+GFP FP+WLG  S   K++RLL E + H+       ++ +RL Y+  L+  + +PL         A +  ++ YGLSRDD+FE + E  L     K         + +K +SA TR +N   H SQAL
Sbjct:  567 QTFALTAFDAATFLFGTASKPASFDLRYNAFFVDYDLIPLMVAENYPKSVGAGSRHPPSSLETLKQLSAAADAYCDADIVSQQIRG-AQQWGLLPLSAALHLRVANISGGSIGFPGFPEWLGKNSARGKKKRLLTETAMHMRQKTMMNSQTLRLDYMDALRNSIVRPLHNGAPEDIDATIESMQSYGLSRDDVFETMQEVRLENADPK------LFEIPTKVKSAFTRKFNKLGHLSQAL 799
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BLAST of mRNA_E_fasciculatus_S2_contig7095.15266.1 vs.
Match: Replication (factor C subunit 1 n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C9T1_THAPS)

HSP 1 Score: 147 bits (370), Expect = 3.040e-32
Identity = 95/256 (37.11%), Postives = 132/256 (51.56%), Query Frame = 1 
Query:   10 RIGPFDAARSILGGASRT---------PLRDRYELFFTDYSLLPLLIHQNYLSSLMQV--DARVRSD---------VTAAASAAVSDADIISGKMRGDVQHWELLPAQAALNVRVGSIGGGSLG-----FPEFPKWLGNYSRENKRRRLLGELSTHLNAGVSGGTEAVRLSYIHFLKRLLTQPLREEGAAGAPACVALLEEYGLSRDDLFEVLPEFVLSGKGMKRPPLDVFGSLDSKTRSAVTRCYNAQAHKSQAL 702
            R+  FDA + I+ G   T             R + FF DY L+ L IHQNYL   +    +A+ R D             A+ A+SD  I+   +RG  Q+W LLP  + L  +VG   GG  G     +PEF  WLG  S  NK+ RLLGEL  H+N  VS  +  +R++Y+  ++    + L  +        +AL++EYGL RDD+FE L EF+L+    K      FG +DSK ++A TR YN  AHK+QAL
Sbjct:  893 RVSMFDATKLIVEGPRDTGSDAKKNNDSFFKRTDAFFVDYMLMGLNIHQNYLKVCVGQYNNAKTRGDDDLELAALDAVHDATLAMSDFGIVEENLRGGDQNWALLPLCSVLAAKVGFHAGGPTGGFLPGYPEFAGWLGKNSTRNKKIRLLGELRHHMNFKVSADSPELRMNYLPIMREQFQELLFCKDGPRVTEAIALMDEYGLDRDDVFENLDEFILTSADSKEKK---FGDMDSKAKAAFTRAYNQLAHKAQAL 1145
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7095.15266.1 vs.
Match: Replication (factor C subunit 1 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0N7L788_PLAHL)

HSP 1 Score: 144 bits (363), Expect = 1.190e-31
Identity = 89/236 (37.71%), Postives = 133/236 (56.36%), Query Frame = 1 
Query:    1 QNQRIGPFDAARSILGGASRTPLRDRYELFFTDYSLLPLLIHQNYLSSLMQVDARVRSDVTAA--ASAAVSDADIISGKMRGDVQHWELLPAQAALNVRVGSIGGGSLGFPEFPKWLGNYSRENKRRRLLGELSTHLNAGVSGGTEAVRLSYIHFLKRLLTQPLREEGAAGAPACVALLEEYGLSRDDLFEVLPEFVLSGKGMKRPPLDVFGSLDSKTRSAVTRCYNAQAHKSQAL 702
            ++ R+ PF A + I           R E +F DY L+PL+I +NY+ S+M     V  ++ AA  AS  +SD+D+I+  +R D Q W+LL  QAA+N+       G +G PEF +WLG  S  +K +RLL ELS  + +  SG  E +RL Y+ ++K +L + L   G     A + LL+E  +SR+DL E +  F   G  +KR     +  LD+K ++A TR YN  +HKSQA+
Sbjct:  545 ESLRLNPFSATQQIF--QRELSFDARNEAYFVDYDLMPLMIQENYIQSIMNNRRSVDENLQAAMYASEFISDSDLINTYVRVD-QRWDLLTKQAAMNIGACVYSAGFIGHPEFSRWLGKNSSASKSKRLLSELSVRMRSHASGSREVIRLDYVPYMKEILLKLLLT-GENNIHAVIELLDECEISREDLTESMESFKFPG--IKRYS---YTELDTKAKTAFTRMYNKASHKSQAV 771
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7095.15266.1 vs.
Match: replication (factor C subunit 1 n=1 Tax=Blastocystis sp. subtype 4 TaxID=944170 RepID=UPI000711E472)

HSP 1 Score: 142 bits (358), Expect = 4.240e-31
Identity = 86/231 (37.23%), Postives = 127/231 (54.98%), Query Frame = 1 
Query:   13 IGPFDAARSILGGASRTPLRDRYELFFTDYSLLPLLIHQNYLSSL------MQVDARVRSDVTAAASAAVSDADIISGKMRGDVQHWELLPAQAALNVRVGSIGGGSLGFPEFPKWLGNYSRENKRRRLLGELSTHLNAGVSGGTEAVRLSYIHFLKRLLTQPLREEGAAGAPACVALLEEYGLSRDDLFEVLPEFVLSGKGMKRPPLDVFGSLDSKTRSAVTRCYNAQAH 687
            I PF+AA+++L   +   L+DRY ++F+DY + PLL+ QNYL S+      M V A++     A A+ A+ D +++   +     +W LLP+ A + +R G    G   FP FP  LG YS   K  R +GEL TH+N  ++G   AV + Y   L + L +PL +E   G    +  ++EYG++RDDL +VL    L G+G  R     F  +  KTRS+ TR YN Q H
Sbjct:  521 ITPFEAAKALLIEPTSHALKDRYNMYFSDYEMTPLLVEQNYLDSIKSNGGSMDVVAQM-----AEAAEAMCDLEMLHDTIL-KTNNWSLLPSMAMITIRGGMKATGKYVFPRFPMMLGKYSTIRKNMRTVGELQTHINMNITGSRRAVVMDYFDMLNQYLLRPLTQEDVHGT---IERMDEYGITRDDLVDVLNGTQL-GQGKTR-----FEQIPGKTRSSFTRIYNGQNH 736
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7095.15266.1 vs.
Match: Replication (factor C subunit 1 n=5 Tax=Phytophthora TaxID=4783 RepID=D0NZ13_PHYIT)

HSP 1 Score: 141 bits (356), Expect = 9.450e-31
Identity = 89/248 (35.89%), Postives = 135/248 (54.44%), Query Frame = 1 
Query:    1 QNQRIGPFDAARSILGGASRTPLRDRYELFFTDYSLLPLLIHQNYLSSLMQVDARVRSDVTAA--ASAAVSDADIISGKMRGDVQHWELLPAQAALNVRVGSIGGGSLGFPEFPKWLGNYSRENKRRRLLGELSTHLNAGVSGGTEAVRLSYIHFLKRLLTQPLREEGAAGAPACVALLEEYGLSRDDLFEVLPEFVLSGKGMKRPPLDVFGSLDSKTRSAVTRCYNAQAHKSQALAVALQAPKKAKK 738
            ++ R+ PF A + I           R E +F DY L+PL++ +NY+ S+M        ++ AA  AS  +S++D+++  +R + Q W+LL  QAA+NV       G +G PEF KWLG  S  +K +RLL ELS  + A  SG  E +RL Y+ ++K +L + L   G       + LL+E  +SR+DL E +  F   G  +KR     +  LD+K ++A TR YN  +HKSQA+  A+      KK
Sbjct:  589 ESLRLNPFSATQQIF--QRELSFDARNEAYFVDYDLMPLMVQENYIQSIMNNRRSSDENLEAAMHASEFISESDLLNTYVRVE-QRWDLLTKQAAMNVGACVYSAGFIGHPEFSKWLGKNSSASKSKRLLSELSVRMRAHASGSREVIRLDYVPYMKEILLKKLLS-GEDNIHEVIELLDECEISREDLTESMESFKFPG--VKRHS---YSELDTKAKTAFTRMYNKASHKSQAVVEAVLGSTTIKK 827
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7095.15266.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Replication8.900e-14695.53factor C subunit 1 n=2 Tax=Ectocarpus TaxID=2879 R... [more]
Hypothetical7.230e-5750.42protein n=2 Tax=Rhizochromulina marina TaxID=10348... [more]
AAA7.010e-4142.15domain-containing protein n=1 Tax=Aureococcus anop... [more]
P-loop1.260e-3832.10containing nucleoside triphosphate hydrolase prote... [more]
Replication4.760e-3438.02factor C subunit 1 n=1 Tax=Symbiodinium sp. KB8 Ta... [more]
Replication1.110e-3337.92factor C subunit 1 n=1 Tax=Hondaea fermentalgiana ... [more]
Replication3.040e-3237.11factor C subunit 1 n=1 Tax=Thalassiosira pseudonan... [more]
Replication1.190e-3137.71factor C subunit 1 n=1 Tax=Plasmopara halstedii Ta... [more]
replication4.240e-3137.23factor C subunit 1 n=1 Tax=Blastocystis sp. subtyp... [more]
Replication9.450e-3135.89factor C subunit 1 n=5 Tax=Phytophthora TaxID=4783... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7095contigE_fasciculatus_S2_contig7095:130..6536 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score371.3
Seed ortholog evalue3.9e-100
Seed eggNOG ortholog2880.D8LND0
Model size2715
KEGG koko:K10754
KEGG Pathwayko03030,ko03420,ko03430,map03030,map03420,map03430
KEGG ModuleM00289,M00295
Hectar predicted targeting categoryother localisation
GOsGO:0000278,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005657,GO:0005663,GO:0005694,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006271,GO:0006272,GO:0006281,GO:0006298,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0007049,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0016070,GO:0022616,GO:0032991,GO:0033554,GO:0034641,GO:0034645,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044446,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:1901360,GO:1901576
Exons6
EggNOG free text desc.DNA clamp loader activity
EggNOG OGsCOG5275@1,KOG1968@2759
Ec32 ortholog descriptionReplication factor C small subunit
Ec32 orthologEc-04_004310.1
Cds size831
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03032,ko03400
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7095.15266.1prot_E_fasciculatus_S2_contig7095.15266.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7095 277..4799 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842370.469549-UTR-E_fasciculatus_S2_contig7095:129..2761696842370.469549-UTR-E_fasciculatus_S2_contig7095:129..276Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig7095 130..276 +
1696842370.5638492-UTR-E_fasciculatus_S2_contig7095:4799..65361696842370.5638492-UTR-E_fasciculatus_S2_contig7095:4799..6536Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig7095 4800..6536 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842370.4883554-CDS-E_fasciculatus_S2_contig7095:276..3651696842370.4883554-CDS-E_fasciculatus_S2_contig7095:276..365Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7095 277..365 +
1696842370.5045445-CDS-E_fasciculatus_S2_contig7095:995..11911696842370.5045445-CDS-E_fasciculatus_S2_contig7095:995..1191Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7095 996..1191 +
1696842370.5166855-CDS-E_fasciculatus_S2_contig7095:1644..17791696842370.5166855-CDS-E_fasciculatus_S2_contig7095:1644..1779Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7095 1645..1779 +
1696842370.529004-CDS-E_fasciculatus_S2_contig7095:2803..30071696842370.529004-CDS-E_fasciculatus_S2_contig7095:2803..3007Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7095 2804..3007 +
1696842370.5391088-CDS-E_fasciculatus_S2_contig7095:3761..38681696842370.5391088-CDS-E_fasciculatus_S2_contig7095:3761..3868Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7095 3762..3868 +
1696842370.5497415-CDS-E_fasciculatus_S2_contig7095:4699..47991696842370.5497415-CDS-E_fasciculatus_S2_contig7095:4699..4799Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7095 4700..4799 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7095.15266.1

>prot_E_fasciculatus_S2_contig7095.15266.1 ID=prot_E_fasciculatus_S2_contig7095.15266.1|Name=mRNA_E_fasciculatus_S2_contig7095.15266.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=277bp
MQVDARVRSDVTAAASAAVSDADIISGKMRGDVQHWELLPAQAALNVRVG
SIGGGSLGFPEFPKWLGNYSRENKRRRLLGELSTHLNAGVSGGTEAVRLS
YIHFLKRLLTQPLREEGAAGAPACVALLEEYGLSRDDLFEVLPEFVLSGK
GMKRPPLDVFGSLDSKTRSAVTRCYNAQAHKSQALAVALQAPKKAKKRKA
PPKSVSMEGEDGDDDGGDESEEEEEDNDVSAFKKKVRIYVVVVLGSPAPR
PRPQRRARPRLTPDPKRPRSKGDQEV*
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mRNA from alignment at E_fasciculatus_S2_contig7095:130..6536+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7095.15266.1 ID=mRNA_E_fasciculatus_S2_contig7095.15266.1|Name=mRNA_E_fasciculatus_S2_contig7095.15266.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=6407bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7095:130..6536+ (Ectocarpus fasciculatus EfasUO2)
CAGAATCAGAGGATCGGTCCCTTCGACGCGGCCCGCAGCATCCTCGGGGG
TGCCTCCCGGACACCGCTTCGCGACCGGTACGAGCTCTTCTTCACCGACT
ACAGCCTGCTGCCCCTGCTGATCCACCAGAACTACCTGTCGAGCCTGATG
CAGGTCGATGCCCGGGTAAGGTCGGACGTGACCGCGGCGGCATCGGCGGC
GGTGAGCGACGCCGACATCATCAGCGGGAAGATGAGGTAGGGGGCGGGGG
GAAGAGTGGTTGGGTGTGGGGTTGGGTGACGGCGTTGGTGGTGTTGTTGC
TGTGGTGTTGATCTCGCAACTGTCGGTTGTTGTTGTCGCTTGTTGTTGCG
GTTGGTGTTGGTGTTGGTGGTGGTGGTGATGAATATCGTGGTATTGTCGT
TTTGTGGTGTGGTGGTGTTGATCTCACAAGTGTCGGTTACTGTTGTTGCT
GTCGCTGTTGTTGTTTGTGGCGTGATGGTGTTGATATCAAAATTGTCGGT
TGTCAACGCCGCTTGAGCGTCGTCGCAGCATTTTCTCGTTTTATTCCTTC
CGTCTGAAGAGAAGGGAGAGGACCATTTCTTTTGCTACGGTACGTGGCGC
CGTCAACCCACGCGCACAACACCTCAGCCCCCTCACGACTGCGTGCTCTC
CCCACCCCCATCCGAAAACAGACACGACGCTTAGGTTTTGTTCCCAGATT
TGAAACAAAATATACCGCCTTGTGAAGAAAAAAAAAACACAGGGGACCGG
GAGCTCCTCCTCATGCGGACTAGTTCGTTGTTATAACATTTTACAAAAGC
CATAGCAACAACCACGGAATAATCAAACCTAACGCCGCCATCCACCAACT
TTTGTCATTCCTGCAGGGGCGACGTCCAGCACTGGGAGCTCCTGCCCGCG
CAGGCGGCCCTGAACGTGAGGGTGGGGTCCATCGGCGGCGGCAGCCTGGG
CTTCCCCGAGTTCCCCAAGTGGCTGGGCAACTACAGCCGGGAGAACAAGC
GACGCCGGCTGCTGGGCGAGCTGTCGACGCACCTCAACGCCGGCGTCAGC
GGCGGCACCGAGGTGAGAGAGAAAAGAGTGTAGATGGCGGAGAGGGTGGT
TGGAGGGGGGCGGGCAGGTGTTTCGTAGTGGCATAGCACGCGCTCGATAG
CGAGCTCGTTGGCTTTGCAGGGGGGGGGTCGAGGAGGCTCGGATTGGTTG
CGGTTCAAGGTTGGTTCGTTGAGGAAAATGTTGTGCCTCTTTTTTGTGGT
TCTTCTTTTTTTGTCTTGTTTTCGATGAGAGAAAAGTATATACAGAGGTA
TCCGTGATTATCGGCGTTGGTGTTTTGGGCCGTCGTTCAGGATGGTACAT
AGTGGCTGGTACCCCGCCTCCCTCACCGGGACCCCTTTGTTTCCCCCGCT
CCCTTCCCTTGATGTCTCTCTCGCCTGTCGCCTTGACCCAACCCTAATCG
GTCGGTCTGTCCTGCTTGCCCACGTCTCACCCCCGATCCCTGCACGCATA
CACGCCCCCCCCCAGGCGGTTAGGCTGTCGTACATTCACTTCCTGAAGAG
GCTGCTGACCCAGCCGTTGCGAGAAGAGGGCGCGGCAGGGGCCCCGGCGT
GTGTGGCCCTCCTGGAGGAGTACGGGCTGTCAAGGGACGATCTTTTCGAG
GTCCGTTTCTCTCTCTCTCCCGTTTGTCACGCGTATTCAGGTTCACTCTT
ACTCAACGTCTCTTATTGTTGTTGATTTTTTTCAAATCATGGGTATTGGG
GGTTGACTCTGTCTCTGTGTGCTCTTGTTTTTTGTGAATCACATGTATTC
GGGTTCACTCTCTCTGTCTTTGTTTTTGTTTTTTGTTTGTCATGCGCGTT
CAGGTTCACTCTTACTCTAGTCTCCTATTGTTGTTTTTGATCGTCGTATT
CGCGTTCACTCTCTTTCTCTGTGTTCTTGTTTTTTGCGAATCACATGTAT
TCGGGTTCACTCTCTCTCTCTTTGTTTTTGTTTGTCGCGCGTTTTCATGT
TCACTCCATCCTCTAGCTCCTACTGTTGTTGATTATTTCGAATCATGCGT
ATTTGGGTTTACTCTCTCTCGGTGTTATTGGTTTTGCATGAATCACACGT
GCTATGTTCACTCTCTATTTTGAAAGCACCGCACGTATTTTTTCGCCTCG
TTGTTTCGTGTCCATAACGGGGTCGCCCCAGTGGTCAGCCTCGTTTCTTT
TGCGCAACCGTGTGCACTGGTAGTTATCAAGAGGATTCATTGCTTCAGCA
CATGAAATGATTTGTTGCTGTGGGAATAGAATCTCGCACCGAAGATCACG
CCACGTAGTTTCTGAGCCTCCCCAAGGGAGACTCCAGCACGCCCCTGGGC
TCGAAAATCAACTCGCAGCCCCCGTTTTTTTAAGCCCGACTCCAAAAGAG
CGGGAATGACCCCCCTCCCCTGCCCACCAACCGCTATCTTCCTATCCGCG
TCTTCCCTCTCTCGTCCCACGCGTCACCCGACGACGCACCTTTCTAGAAC
GCATACGTACAGCCACAGAGGGACTATGGTACAAGTACCCGTTCGAGAAG
GGGGTGCACGTGTTGGAGGAAACCCGCTGGACGCTCGGCTTATTCTGGGG
GTGTTTAAGCCTAATCAGTGATTTTGCCAGGGAATCTGGAACATGTAAAT
GTCTATCTCTCCGTCGTCGTTCAGGTGTTGCCGGAGTTCGTGCTGAGCGG
GAAAGGCATGAAGCGTCCTCCCCTCGACGTGTTCGGCTCGCTCGACTCCA
AGACGAGGTCTGCCGTCACGCGATGCTACAACGCCCAGGCGCACAAGTCC
CAGGCTCTGGCGGTTGCCCTGCAGGCGCCCAAAAAGGCCAAGAAGAGAAA
AGCTCCCCCCAAGTCTGTTTCCATGGAGGTAATGAATGCACTTCTGTTGC
AGTGTTTGCGGGTTGTTGTGGTTGTTGCTATGGAGTCGCTGTTCGTTGCG
GGGAGTTTTAGTCGTGGTGTTTATTCGACTCGAGTGTGTCGATTTTTTGT
TCGTTGCGAGGAACCTGTCAGTTCCGCTTTTTTTTTTTTTATTTGTTTTA
CTGCTACAGTTTTTTTTTGTTGTTGCGGGAAATGTGTCACCTACCTATGC
TCTTTGTTGTTTTCAAGTCTACTTCCGTGGACGCATGTATGCTATGTGCG
GGCGGGCTGTTGTTGTTTGTTGCTGGGAATGCGCCAGTTACGCTCTATTT
GATGTTTTCCCCTGTTTTTTGGGGCTCCTGCGTCGTTTTCATTTCGTTGC
AGAAATGTGTAAAGTGCAAAGTGCTTTGCAGTTTTTTTTAGGTTTTCTGG
ACCCCTGCGTCGATTTTGTGTTGAGCAAGCGACACAGGGCGGAACTGGCG
TTCCGGTCGCTTTACCCCCCCCTCGCCCCGTCCTTGTTACTTTCCACTCT
CAATGAAATTCCGTGACGGTTGGTCTTGTGTATCTGGTGTTGTAAAAGTA
TGTGGCTGGCTGACATCCACACACTTGAACGTCCGGTGTTTGTTTGTATT
TTGATGTATGGCTTGCCGGCATCCATACACTGAACAACAGAAAATGACAT
CCACACGACGACGCGAAGAACGAATATACAAATATGCATGTGTGCTGTGC
TACTCTGTACTGCACTGTACTGTCTTCGTTAGGGAGAAGACGGAGACGAC
GACGGAGGTGACGAGAGCGAGGAGGAGGAAGAGGACAATGACGTGTCCGC
CTTCAAGAAGAAGGTTCGGATTTATGTTGTGGTTGTTTTGTTGTTGTTGT
TTTTGCTGCTGTTTGTTGTCGTGGTTTGTTGTTGTTGTTGCTGTTGTTGT
GTTGTTGCTGGTGCTGGTGCTGGTGCTGCTGTCGTTGCCCTTGGTTCTGT
CGTTGGGAAGGTGGACATGTCAACACGCCTGTTGTCCGTCGGCGTGTCTA
TCGTGCATGCATGCTTTCATCAGCACAGCTTGGCCAAGGAAGTATTTCGA
GGCTTGAAGCAGGAAAAGGTCTGATCGCCGCCTTCGTGGTACCCGGTTGC
TGTTGTATCGGTTTTCATCGTATGCATCCCGCGCTTGTTTGCGTATGTAC
CGATCAGCTCAGTGCAGAATCATGTATGGAAATACCGTGTTGATGTCGGA
AAAAATGCAGAACGGGTCGGTTCAGTGCAGAATGAAATACCATGGAAGTG
CCGTGTCAATATCGGAAAAAAGTTCGGACCGTGACGACAATCAAGAAAAG
CAGCCTCACAACCCGGAGAGGTGCCCATGACTCATGATCACAGAGCATTT
GTTTGTGTTCGCATCTACTGAAAAGAGGAGAGTGGAGAGCGCTTCTTTGT
GAGTACTGCTGTACGTCGACGGAAGGGGTTGGCGATGCAAAAACGTCTCT
CTGACCTGCCCGCCAGAAAATGCAACACATCCGACGCAAGGGATGATGAA
TTTCCAGCATCTGGTTTATCCTTGTGAAGCGTAGCCTGGGCGGACGAACA
CCCGGCATATCGCTCCGTCCCGGCATTGTAGGGATGCGAGGCCTATGGCC
TACCGACTACGGCATGCGCTCACATGACTACACCCTTCCCGCGCTGCACC
CGCTTGTCGTGTGACAACAGGGGAAGTCCCGCTCCTCGCCCGCGGCCTCA
AAGAAGGGCAAGGCCGCGGCTAACCCCCGATCCAAAAAGACCAAGAAGTA
AAGGAGACCAAGAAGTATAGGAGGCGGAGTGAATAAGACAGGCGGAGATA
AGACAGACGGAGATAAGGCAGAAGGAGATGAGACAGGCGGGCACAACTAA
TGCCCGTGTGGCCGGGTTGCTCGTGCGTCCACACGCTCTCTGTCGCTGGT
ACGCGTCGCCGCAACGATAACGATCAAAGCGATGAAAGCGAGAGCCAGCG
GGGGCGCGAGCTATTTTGGTGTTTGTGTTGTGTTGGCGACGGCGGTGGCG
GGGGCTACACGTAGAACGCGTCGCTCTTGTCGACAGTTCGGGGTTGTTTT
TTTGCCTCCCAGCCAGCAAGCAGCGCGGGCAGGGATGACGGTGCTGGTTG
AATTTTTGCTGTGCTGTCGGTGTGCTGCGGGAGGAGCGGTGTTGTTCGGG
TGTAGGGCACTGAGTTCGGTACCGCGGATCCCCTATTCCGCAAGGTACCA
CCGAGGTGGGAAAAAGAAGAATCAGAGAACGTAAAAAGTGCCGAGCAACG
AGAGAACCGGGTTGTTTCTTTATTCGAAGCCACCAGCAACAACAACAACA
ACAACAACAACAACAACAACAACCTCTTTTCTTGTGAGTAGCCGAAGAGA
GGAAGGAGTGTTTGGCGGTTGGCCCTATTTTGGTAGCGTGCGGTTGGCCC
GCTCGTATCGACGAGGGCGCGGGGTTAGCATCAGGAGGAGCGAGAAGTGT
GAGAGTGAAAACGCATAACTTTGCAAAAGACAACGAGCGTGGCACAGCAG
CAGGTGCTTTGTTTGTTGGTGGTGTTTGTGCGGTGGGAATGAAACGTGGG
GCAGCAGCGCTCGTGTGTTACGGTACAGTAGCAGTGGCTCCATGATGAAC
TGCAGCAGTGGTAGTGTTACAAGTGAAGTTGTGGAGATAGGTTAAGGGAG
GGGGAGGCTGTTGCTGTTCTTGTGTGTCTGGTGTGGAGCACATCCTGTAA
CGATTCTCGCCGAGTCGTGTCCATGCCTGTAGTCGGAGATGCGTCTGGTC
AATGGGCGATACTCCGCGTGGGGGGTTGGATCGTGTTTCTGCCGAGTATC
TCCCCCCCCCACCTTCGGCAACAGCGGCTGTCTGCCTTGACCCGCGCGTG
CTTGATCTAGCTGTGGCGTTGTGGGGGGTCGTGCAAGGTGAACGGTGAGC
AGCAGGCATGCGGTATGCGGTATGCGGTATGGAAGCGTGAAAAAAAGTCT
TTGACGGTGTCGAGGGACAAGCGAGAGCGGGGGTGTCTATTGTAGTACCG
TTGTCGGCGTACTTGATGAGAGAGACGTGTGTCCAGCTGTTGCGCGTAAT
TGTCATTATTGTCATTAATTTCCTTTCGTCGCGCTGTCGCGTGTGAAAAA
TCGGCGGGCAAGCTGGTGTAGGTTACCGAATTGACCAGCTTACGGCATCT
CTGACTCGCGCGTCTCCGTGGCGTGTCTCCAGCTGTTGCGCGTAAATTAT
TTTAGTTTTGTCGTTATTTTGTTCTCTGTCAAGGGAAAGGGCACCCTAAC
CGACCTGCCTCTTCCCTTTGTCTCTTGACTCGTGTGTCTCCGGGAGTATA
AGGTGGGCGTACTCATGTTTTGCATGCCTTGGCGGTTAGACCATTGACCG
CACGCCCTCGAGAGGACGGAGCGTCGTGGTAGGGGGAGGTAAAAGGCTTG
CCCGAGGAAACCACGTACCATATGAAACGGCGATCGCGATTACTCTTTAG
AGTTTTCAGCAAGCAGATTACATCGCATGGATCTCCCAGCGGCCTACCGA
ATCAACA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7095:130..6536+

>mRNA_E_fasciculatus_S2_contig7095.15266.1 ID=mRNA_E_fasciculatus_S2_contig7095.15266.1|Name=mRNA_E_fasciculatus_S2_contig7095.15266.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=831bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7095:130..6536+ (Ectocarpus fasciculatus EfasUO2)
ATGCAGGTCGATGCCCGGGTAAGGTCGGACGTGACCGCGGCGGCATCGGC
GGCGGTGAGCGACGCCGACATCATCAGCGGGAAGATGAGGGGCGACGTCC
AGCACTGGGAGCTCCTGCCCGCGCAGGCGGCCCTGAACGTGAGGGTGGGG
TCCATCGGCGGCGGCAGCCTGGGCTTCCCCGAGTTCCCCAAGTGGCTGGG
CAACTACAGCCGGGAGAACAAGCGACGCCGGCTGCTGGGCGAGCTGTCGA
CGCACCTCAACGCCGGCGTCAGCGGCGGCACCGAGGCGGTTAGGCTGTCG
TACATTCACTTCCTGAAGAGGCTGCTGACCCAGCCGTTGCGAGAAGAGGG
CGCGGCAGGGGCCCCGGCGTGTGTGGCCCTCCTGGAGGAGTACGGGCTGT
CAAGGGACGATCTTTTCGAGGTGTTGCCGGAGTTCGTGCTGAGCGGGAAA
GGCATGAAGCGTCCTCCCCTCGACGTGTTCGGCTCGCTCGACTCCAAGAC
GAGGTCTGCCGTCACGCGATGCTACAACGCCCAGGCGCACAAGTCCCAGG
CTCTGGCGGTTGCCCTGCAGGCGCCCAAAAAGGCCAAGAAGAGAAAAGCT
CCCCCCAAGTCTGTTTCCATGGAGGGAGAAGACGGAGACGACGACGGAGG
TGACGAGAGCGAGGAGGAGGAAGAGGACAATGACGTGTCCGCCTTCAAGA
AGAAGGTTCGGATTTATGTTGTGGTTGTTTTGGGAAGTCCCGCTCCTCGC
CCGCGGCCTCAAAGAAGGGCAAGGCCGCGGCTAACCCCCGATCCAAAAAG
ACCAAGAAGTAAAGGAGACCAAGAAGTATAG
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