mRNA_E_fasciculatus_S2_contig7088.15258.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7088.15258.1
Unique NamemRNA_E_fasciculatus_S2_contig7088.15258.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig7088.15258.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K945_9PHAE)

HSP 1 Score: 193 bits (491), Expect = 5.300e-56
Identity = 100/115 (86.96%), Postives = 104/115 (90.43%), Query Frame = 1 
Query:    1 SDQGKRARRGAGSDGFGSVPGQLPEKTRDGQDWAEWAKEWREDPQGKAERLVSQWDAEAKANEGGGSQDGRSKXXXXXXXXXGKAGPSRGVVGSGFGGPVRQTKSVPKGLVVSET 345
            S +GKRARRGAGSDGFGSVPGQLPEKTRDGQDWAEWA+EWREDP+GKA+RLVSQWDAEAKANEGGG QDGRSK         GKAGPSRGVVGSGFGGPVRQTKSVPKGLVVSET
Sbjct:  117 SGEGKRARRGAGSDGFGSVPGQLPEKTRDGQDWAEWAREWREDPEGKADRLVSQWDAEAKANEGGGLQDGRSKKRKAKKNKKGKAGPSRGVVGSGFGGPVRQTKSVPKGLVVSET 231
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7088.15258.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized5.300e-5686.96protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7088contigE_fasciculatus_S2_contig7088:6287..7458 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop0
Start0
Model size470
Hectar predicted targeting categoryother localisation
Exons2
Cds size468
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842369.5556731-CDS-E_fasciculatus_S2_contig7088:6288..65521696842369.5556731-CDS-E_fasciculatus_S2_contig7088:6288..6552Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7088 6289..6552 -
1696842369.5682485-CDS-E_fasciculatus_S2_contig7088:7254..74581696842369.5682485-CDS-E_fasciculatus_S2_contig7088:7254..7458Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7088 7255..7458 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7088.15258.1prot_E_fasciculatus_S2_contig7088.15258.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7088 6289..7458 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7088.15258.1

>prot_E_fasciculatus_S2_contig7088.15258.1 ID=prot_E_fasciculatus_S2_contig7088.15258.1|Name=mRNA_E_fasciculatus_S2_contig7088.15258.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=156bp
SDQGKRARRGAGSDGFGSVPGQLPEKTRDGQDWAEWAKEWREDPQGKAER
LVSQWDAEAKANEGGGSQDGRSKKRKAKKKKKGKAGPSRGVVGSGFGGPV
RQTKSVPKGLVVSETGGDKGDVVDWSKGQQLREVRCTAYSLIPRRICRTL
QMCAFV
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mRNA from alignment at E_fasciculatus_S2_contig7088:6287..7458-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7088.15258.1 ID=mRNA_E_fasciculatus_S2_contig7088.15258.1|Name=mRNA_E_fasciculatus_S2_contig7088.15258.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1172bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7088:6287..7458- (Ectocarpus fasciculatus EfasUO2)
TCCGATCAGGGCAAGAGGGCGAGGCGGGGGGCGGGTAGCGATGGCTTTGG
TTCCGTGCCGGGCCAGCTTCCGGAGAAGACACGGGATGGGCAGGACTGGG
CAGAGTGGGCGAAGGAATGGCGCGAGGACCCCCAGGGCAAGGCCGAAAGA
CTAGTGAGCCAGTGGGATGCCGAAGCCAAGGCGAATGAGGGTGGAGGCTC
GCAGGTGGGTAACTCACTACACGATCCCAGCGTCAAGTCGATTGTTTTTT
GTACGCTTTAGACTTGACGGTTGCTTTGCTCGGCGGCGGCGGAAACAACG
CCCCCTTTGGTGAGCGGCGACGTTCGTGAACATGGTCAGCGCGCGTACAG
CCGTTCGCCGCAGACTCTACATAGAACGAAGCAGGAGTGTTGGTGATGAG
CTTGTGAGTAGTTGGAAATCCGAATCCATGCGCGAAGGTTTCATAGAACC
TGGTATTTTCGGGGTTCATCGTTGAGATAACTCGGTGTTAGGAGCAGAAG
AGAACGCAACAAAAATCTTGCTGCACTCAAAACGACAACGTACCCTTTGT
ACAGGCACTACTCGAGGAAGGGGGACGGAAAATCCAACCGTACACGTGGA
AGTCGACCCCTAGAGTAATGGGTCACACATTTTGGTGTACAGCTTTCCTA
GAAATCGTATTCGTGATGTAATGAGGCCAGGAAAAGCAAGGAAACGTGCG
AAGGTCGACCCTCCGTGGTATGAGCTTCTACTAGCCCTACCAGAAATAAA
TATTTGCAGCTAGCTCCTGCGGCTGTCACCACAATCACCAAACCACAGGC
ATGTCACCGTTACTCCGATCATGCTGTTCACGGATCACCGCAAGTGTGCC
TTTCCCAGCCAGCCCCGTCAACCCTAAACCGTGGCCCTATCGCAATCCAA
CTCTAGGACGGGAGATCCAAGAAGCGCAAGGCGAAGAAGAAGAAGAAGGG
CAAAGCCGGTCCGTCGCGTGGAGTGGTCGGCAGCGGCTTCGGTGGTCCCG
TGCGGCAGACGAAGAGCGTCCCAAAGGGGCTGGTGGTGTCTGAGACGGGT
GGGGACAAGGGGGACGTCGTGGATTGGAGCAAGGGCCAACAGCTCAGGGA
GGTGAGGTGTACCGCGTACAGTTTGATCCCAAGGCGTATCTGCCGCACAC
TCCAGATGTGTGCGTTCGTCGG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7088:6287..7458-

>mRNA_E_fasciculatus_S2_contig7088.15258.1 ID=mRNA_E_fasciculatus_S2_contig7088.15258.1|Name=mRNA_E_fasciculatus_S2_contig7088.15258.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=468bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7088:6287..7458- (Ectocarpus fasciculatus EfasUO2)
TCCGATCAGGGCAAGAGGGCGAGGCGGGGGGCGGGTAGCGATGGCTTTGG
TTCCGTGCCGGGCCAGCTTCCGGAGAAGACACGGGATGGGCAGGACTGGG
CAGAGTGGGCGAAGGAATGGCGCGAGGACCCCCAGGGCAAGGCCGAAAGA
CTAGTGAGCCAGTGGGATGCCGAAGCCAAGGCGAATGAGGGTGGAGGCTC
GCAGGACGGGAGATCCAAGAAGCGCAAGGCGAAGAAGAAGAAGAAGGGCA
AAGCCGGTCCGTCGCGTGGAGTGGTCGGCAGCGGCTTCGGTGGTCCCGTG
CGGCAGACGAAGAGCGTCCCAAAGGGGCTGGTGGTGTCTGAGACGGGTGG
GGACAAGGGGGACGTCGTGGATTGGAGCAAGGGCCAACAGCTCAGGGAGG
TGAGGTGTACCGCGTACAGTTTGATCCCAAGGCGTATCTGCCGCACACTC
CAGATGTGTGCGTTCGTC
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