mRNA_E_fasciculatus_S2_contig7088.15257.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7088.15257.1
Unique NamemRNA_E_fasciculatus_S2_contig7088.15257.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig7088.15257.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K945_9PHAE)

HSP 1 Score: 515 bits (1327), Expect = 5.300e-174
Identity = 345/462 (74.68%), Postives = 360/462 (77.92%), Query Frame = 1 
Query:    1 SDQGKRARRGAGSDGFGSVPGQLPEKTRDGQDWAEWAKEWREDPQGKAERLVSQWDAEAKANEGGGSQDGRSKXXXXXXXXXGKAGPSRGVVGSGFGGPVRQTKSVPKGLVVSETXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQQDAKNLESLDPSDREKLAEQLRTALGKKKEKGKKTKAKR---NDRGESKGFSTTATPTGGADTAAINGRGDGRGVLASAAAAAGALVADDVAGVSVFPSAADGSNGAMEQLGSDGECESGES-------VSAGGGGEGRGNEEPLVLDGGVEGASGKKTVADSSGGVQVLPVAGAAVEGGDSPVGGQQLASSGADEIEKNSDGVPLERVMGFGKGVAVVEATTDDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSLPSGEDPAEGDGREKKTPVAASETPGSGGEDDRS-RGFGRGVAFPEKPDDGGM 1353
            S +GKRARRGAGSDGFGSVPGQLPEKTRDGQDWAEWA+EWREDP+GKA+RLVSQWDAEAKANEGGG QDGRSK         GKAGPSRGVVGSGFGGPVRQTKSVPKGLVVSETXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQQDAKNLESLDPSDREKLAEQLRTALGKKK             +DRGESKGFSTTA PTGG D +AI GRGDGRGVLASAAAAAGA+ A+DVAGVSVFPSAA+GSNGAMEQLGSDGE E GES       VSAG G EGRG +EPL+++ G EG  GKKTVAD SGGVQVLPVAGAAVEGGDSPVGGQQLAS GAD IEK  DGVPLE+VMG G GVAVVEA T+DG                                     SLPS ED AEGD  E K PVAASETPGSGGEDDR  R FGRGVAFP K DD GM
Sbjct:  117 SGEGKRARRGAGSDGFGSVPGQLPEKTRDGQDWAEWAREWREDPEGKADRLVSQWDAEAKANEGGGLQDGRSKKRKAKKNKKGKAGPSRGVVGSGFGGPVRQTKSVPKGLVVSETXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQQDAKNLESLDPSDREKLAEQLRTALGKKKXXXXXXXXXXXXPSDRGESKGFSTTAIPTGGTDASAIKGRGDGRGVLASAAAAAGAVAAEDVAGVSVFPSAAEGSNGAMEQLGSDGEYEVGESKGAEGKSVSAGVGAEGRGKDEPLLVEAGAEGDPGKKTVADGSGGVQVLPVAGAAVEGGDSPVGGQQLASPGADGIEKIGDGVPLEKVMGIGTGVAVVEAATNDGACSDAGGVSAVGSTGESARDSSDEGELSRALSFGKGISLPSEEDAAEGDDGEMKKPVAASETPGSGGEDDRLLRSFGRGVAFPAKADDSGM 578
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7088.15257.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized5.300e-17474.68protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7088contigE_fasciculatus_S2_contig7088:4497..7458 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start1
Model size1851
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-05_002850.1
Cds size939
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842369.4680595-UTR-E_fasciculatus_S2_contig7088:4496..49911696842369.4680595-UTR-E_fasciculatus_S2_contig7088:4496..4991Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig7088 4497..4991 -
1696842369.4928102-UTR-E_fasciculatus_S2_contig7088:5930..59481696842369.4928102-UTR-E_fasciculatus_S2_contig7088:5930..5948Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig7088 5931..5948 -
1696842369.5083408-UTR-E_fasciculatus_S2_contig7088:6357..65521696842369.5083408-UTR-E_fasciculatus_S2_contig7088:6357..6552Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig7088 6358..6552 -
1696842369.5196652-UTR-E_fasciculatus_S2_contig7088:7254..74581696842369.5196652-UTR-E_fasciculatus_S2_contig7088:7254..7458Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig7088 7255..7458 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842369.4812527-CDS-E_fasciculatus_S2_contig7088:4991..59301696842369.4812527-CDS-E_fasciculatus_S2_contig7088:4991..5930Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7088 4992..5930 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7088.15257.1prot_E_fasciculatus_S2_contig7088.15257.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7088 4992..5930 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7088.15257.1

>prot_E_fasciculatus_S2_contig7088.15257.1 ID=prot_E_fasciculatus_S2_contig7088.15257.1|Name=mRNA_E_fasciculatus_S2_contig7088.15257.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=313bp
MVADWQQDAKNLESLDPSDREKLAEQLRTALGKKKEKGKKTKAKRNDRGE
SKGFSTTATPTGGADTAAINGRGDGRGVLASAAAAAGALVADDVAGVSVF
PSAADGSNGAMEQLGSDGECESGESVSAGGGGEGRGNEEPLVLDGGVEGA
SGKKTVADSSGGVQVLPVAGAAVEGGDSPVGGQQLASSGADEIEKNSDGV
PLERVMGFGKGVAVVEATTDDGAWSDAGGVSAVGSTGESARDLSDEGELS
RALSFGKGVSLPSGEDPAEGDGREKKTPVAASETPGSGGEDDRSRGFGRG
VAFPEKPDDGGM*
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mRNA from alignment at E_fasciculatus_S2_contig7088:4497..7458-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7088.15257.1 ID=mRNA_E_fasciculatus_S2_contig7088.15257.1|Name=mRNA_E_fasciculatus_S2_contig7088.15257.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=2962bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7088:4497..7458- (Ectocarpus fasciculatus EfasUO2)
TCCGATCAGGGCAAGAGGGCGAGGCGGGGGGCGGGTAGCGATGGCTTTGG
TTCCGTGCCGGGCCAGCTTCCGGAGAAGACACGGGATGGGCAGGACTGGG
CAGAGTGGGCGAAGGAATGGCGCGAGGACCCCCAGGGCAAGGCCGAAAGA
CTAGTGAGCCAGTGGGATGCCGAAGCCAAGGCGAATGAGGGTGGAGGCTC
GCAGGTGGGTAACTCACTACACGATCCCAGCGTCAAGTCGATTGTTTTTT
GTACGCTTTAGACTTGACGGTTGCTTTGCTCGGCGGCGGCGGAAACAACG
CCCCCTTTGGTGAGCGGCGACGTTCGTGAACATGGTCAGCGCGCGTACAG
CCGTTCGCCGCAGACTCTACATAGAACGAAGCAGGAGTGTTGGTGATGAG
CTTGTGAGTAGTTGGAAATCCGAATCCATGCGCGAAGGTTTCATAGAACC
TGGTATTTTCGGGGTTCATCGTTGAGATAACTCGGTGTTAGGAGCAGAAG
AGAACGCAACAAAAATCTTGCTGCACTCAAAACGACAACGTACCCTTTGT
ACAGGCACTACTCGAGGAAGGGGGACGGAAAATCCAACCGTACACGTGGA
AGTCGACCCCTAGAGTAATGGGTCACACATTTTGGTGTACAGCTTTCCTA
GAAATCGTATTCGTGATGTAATGAGGCCAGGAAAAGCAAGGAAACGTGCG
AAGGTCGACCCTCCGTGGTATGAGCTTCTACTAGCCCTACCAGAAATAAA
TATTTGCAGCTAGCTCCTGCGGCTGTCACCACAATCACCAAACCACAGGC
ATGTCACCGTTACTCCGATCATGCTGTTCACGGATCACCGCAAGTGTGCC
TTTCCCAGCCAGCCCCGTCAACCCTAAACCGTGGCCCTATCGCAATCCAA
CTCTAGGACGGGAGATCCAAGAAGCGCAAGGCGAAGAAGAAGAAGAAGGG
CAAAGCCGGTCCGTCGCGTGGAGTGGTCGGCAGCGGCTTCGGTGGTCCCG
TGCGGCAGACGAAGAGCGTCCCAAAGGGGCTGGTGGTGTCTGAGACGGGT
GGGGACAAGGGGGACGTCGTGGATTGGAGCAAGGGCCAACAGCTCAGGGA
GGTGAGGTGTACCGCGTACAGTTTGATCCCAAGGCGTATCTGCCGCACAC
TCCAGATGTGTGCGTTCGTCGGAAGACCAAGATTGTCAAAGATCTTTGTG
AACACTACCTTCGTGTGTTTCGGGTTCGGTGACGCTGGCTCCAGTGCAGG
CAAGACGGAAGGAAGTAAGGGGTTGAGAGGGGGGTATAGGACGTAGCACA
CGCGGGCCAAGCTGGCGGGGCCGAAGAAAGTGGTACGCTTTCGGATGTGT
GTCGGCAAGGAGCAGGTACACACCCAGCAAGAAGAACATACTTGTAGGAG
AAGCCAGTCGTATTCATCCACGAAACCTCTCCGGACCTTAACCCTTGTTT
TGGCCCCTCCGACCGTGTCATTCACACATTACCCCGTTCGTGAATACGGC
GAACGGGTAGACTGATCGCAAGGAAAACATGGTGGCCGACTGGCAGCAGG
ATGCCAAGAATTTGGAAAGCCTCGACCCCTCTGACAGAGAAAAACTTGCC
GAGCAGCTTCGAACGGCACTTGGCAAGAAGAAGGAGAAGGGAAAGAAGAC
GAAAGCGAAACGTAATGATCGTGGCGAGAGCAAAGGTTTTTCCACGACCG
CTACCCCTACGGGGGGCGCGGATACAGCAGCGATCAACGGTCGGGGTGAC
GGTCGTGGCGTCTTGGCTTCCGCCGCGGCTGCTGCCGGCGCCTTAGTGGC
GGACGATGTTGCGGGTGTCTCCGTCTTCCCTTCGGCGGCCGACGGCAGCA
ATGGGGCCATGGAACAACTTGGTTCCGATGGGGAGTGTGAGAGTGGCGAG
AGCGTGTCGGCCGGCGGTGGTGGCGAAGGTCGGGGAAATGAAGAACCGTT
GGTCTTGGACGGGGGCGTCGAGGGTGCCTCCGGAAAGAAAACCGTCGCCG
ACAGCAGTGGCGGCGTCCAGGTGCTCCCGGTCGCTGGTGCAGCCGTTGAG
GGAGGGGATTCACCTGTGGGTGGACAACAATTAGCCTCGTCCGGGGCAGA
CGAAATCGAGAAAAATAGTGACGGAGTTCCCCTGGAGAGGGTCATGGGCT
TCGGAAAAGGTGTGGCGGTCGTCGAGGCTACTACCGATGATGGCGCTTGG
AGCGACGCTGGAGGTGTTTCTGCGGTCGGCTCTACGGGAGAGTCAGCAAG
AGATCTCTCAGACGAGGGCGAACTCTCACGGGCCTTGAGTTTCGGGAAAG
GGGTTTCTCTGCCTTCGGGGGAGGACCCGGCAGAGGGTGATGGTCGTGAG
AAGAAAACGCCAGTTGCAGCAAGCGAAACTCCAGGGAGTGGTGGCGAAGA
TGACCGATCACGTGGCTTCGGGAGGGGGGTAGCCTTTCCTGAGAAGCCTG
ATGACGGCGGAATGTAGAATATACGTGTACAATACCCATTCTGTTCGTGT
AGGCGGTACATATTGCGGACGTACGTGTGATGTTGAACCGTCCGTGCTTG
ACGTGCTACTGCTGTACGCGAGGAGAGGCGTCGGAGGAGTGAGCAGCAAA
AGCAAGGACAGAGCTTCTCATACAAAGAATACAGATGTGCGGTGTTTTCG
TGAAGGGATAGAGCATTTGGCTGCTGGGAAATAAAATGGGTAATCTCCGA
CAAGCGCGGCCGATGAAGGGGAGCTGTCGACCGATGTGGTATTATTGACG
TACGTCGTTCTGTTTGCTTTCCTCGCTGAGGTATGCTACTCAAGGTTAGC
GCGAAATCTTCCACAACTTGCTTGCGAAATAATCACATGGGGCGGCCTAG
GTCGCCTTGTCGACATCCGAGGGTGTACTACAACACTGAGGGTGGATGCG
ACTCGACGCAATCGAAAACCGTGTTCTGACAGTAGCGAGTGCCGGCCGGC
CCGCTCGTAAGG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7088:4497..7458-

>mRNA_E_fasciculatus_S2_contig7088.15257.1 ID=mRNA_E_fasciculatus_S2_contig7088.15257.1|Name=mRNA_E_fasciculatus_S2_contig7088.15257.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=939bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7088:4497..7458- (Ectocarpus fasciculatus EfasUO2)
ATGGTGGCCGACTGGCAGCAGGATGCCAAGAATTTGGAAAGCCTCGACCC
CTCTGACAGAGAAAAACTTGCCGAGCAGCTTCGAACGGCACTTGGCAAGA
AGAAGGAGAAGGGAAAGAAGACGAAAGCGAAACGTAATGATCGTGGCGAG
AGCAAAGGTTTTTCCACGACCGCTACCCCTACGGGGGGCGCGGATACAGC
AGCGATCAACGGTCGGGGTGACGGTCGTGGCGTCTTGGCTTCCGCCGCGG
CTGCTGCCGGCGCCTTAGTGGCGGACGATGTTGCGGGTGTCTCCGTCTTC
CCTTCGGCGGCCGACGGCAGCAATGGGGCCATGGAACAACTTGGTTCCGA
TGGGGAGTGTGAGAGTGGCGAGAGCGTGTCGGCCGGCGGTGGTGGCGAAG
GTCGGGGAAATGAAGAACCGTTGGTCTTGGACGGGGGCGTCGAGGGTGCC
TCCGGAAAGAAAACCGTCGCCGACAGCAGTGGCGGCGTCCAGGTGCTCCC
GGTCGCTGGTGCAGCCGTTGAGGGAGGGGATTCACCTGTGGGTGGACAAC
AATTAGCCTCGTCCGGGGCAGACGAAATCGAGAAAAATAGTGACGGAGTT
CCCCTGGAGAGGGTCATGGGCTTCGGAAAAGGTGTGGCGGTCGTCGAGGC
TACTACCGATGATGGCGCTTGGAGCGACGCTGGAGGTGTTTCTGCGGTCG
GCTCTACGGGAGAGTCAGCAAGAGATCTCTCAGACGAGGGCGAACTCTCA
CGGGCCTTGAGTTTCGGGAAAGGGGTTTCTCTGCCTTCGGGGGAGGACCC
GGCAGAGGGTGATGGTCGTGAGAAGAAAACGCCAGTTGCAGCAAGCGAAA
CTCCAGGGAGTGGTGGCGAAGATGACCGATCACGTGGCTTCGGGAGGGGG
GTAGCCTTTCCTGAGAAGCCTGATGACGGCGGAATGTAG
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