mRNA_E_fasciculatus_S2_contig706.15223.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig706.15223.1
Unique NamemRNA_E_fasciculatus_S2_contig706.15223.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
BLAST of mRNA_E_fasciculatus_S2_contig706.15223.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVA2_ECTSI)

HSP 1 Score: 221 bits (562), Expect = 2.910e-67
Identity = 107/112 (95.54%), Postives = 110/112 (98.21%), Query Frame = 3
Query:  243 MAEFQTPRVNGAVLSQFLGNTVCVVGKVLSYQEGDSEAQLETSDGAKITVTMTPGSTWTSQYVEVIGHLHEPDKLQEFKSTDFGDMFDLRKYNEAVTLMTGKFSYLFYNPQE 578
            MAEFQTPRVNGAVLSQFLGNTVCVVGKVLSYQEGDSEAQLETSDGAKITV MT GSTWTSQYVEVIGHLHEPD+LQEFKSTDFGDMFDLRKY+EAV+LMTGKFSYLFYNPQE
Sbjct:    1 MAEFQTPRVNGAVLSQFLGNTVCVVGKVLSYQEGDSEAQLETSDGAKITVQMTAGSTWTSQYVEVIGHLHEPDRLQEFKSTDFGDMFDLRKYDEAVSLMTGKFSYLFYNPQE 112          
BLAST of mRNA_E_fasciculatus_S2_contig706.15223.1 vs.
Match: Uncharacterized (protein n=3 Tax=Aphanomyces TaxID=100860 RepID=A0A024UW39_9STRA)

HSP 1 Score: 96.7 bits (239), Expect = 1.620e-20
Identity = 50/101 (49.50%), Postives = 71/101 (70.30%), Query Frame = 3
Query:  261 PRVNGAVLSQFLGNTVCVVGKVLSYQEGDSEAQLETSDGAKITVTMTPGSTWTSQYVEVIGHLHEPDKLQEFKSTDFGDMFDLRKYNEAVTLMTGKFSYLF 563
            PRVN A+L+QF+G+TV +VG + S+    S+A L+TSD   +TV   PG+ ++S+YVEVIG +     L+EFK T FGD FDL+ Y++ V L+ GK+S LF
Sbjct:    8 PRVNKAILAQFVGHTVSLVGSIESWT--GSQAVLKTSDNGFVTVHPQPGADYSSKYVEVIGSVQPDGSLKEFKCTSFGDDFDLKNYDKLVQLIHGKYSTLF 106          
BLAST of mRNA_E_fasciculatus_S2_contig706.15223.1 vs.
Match: Aste57867_12966 (protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KWY3_9STRA)

HSP 1 Score: 94.7 bits (234), Expect = 8.090e-20
Identity = 49/101 (48.51%), Postives = 71/101 (70.30%), Query Frame = 3
Query:  261 PRVNGAVLSQFLGNTVCVVGKVLSYQEGDSEAQLETSDGAKITVTMTPGSTWTSQYVEVIGHLHEPDKLQEFKSTDFGDMFDLRKYNEAVTLMTGKFSYLF 563
            PRVN AV++Q++G TV +VG + S+    S A ++TSDGA +TV   PG+ +TS++VEVIG +     LQE+K T FGD FDL+ Y++ V L+ GKF+ +F
Sbjct:    8 PRVNKAVMAQYIGRTVALVGSLESWT--GSMAVIKTSDGALVTVHPQPGADYTSKFVEVIGLVKPDGSLQEYKCTSFGDDFDLKNYDKLVHLIHGKFATMF 106          
BLAST of mRNA_E_fasciculatus_S2_contig706.15223.1 vs.
Match: Uncharacterized (protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XXL0_9STRA)

HSP 1 Score: 92.4 bits (228), Expect = 5.230e-19
Identity = 48/101 (47.52%), Postives = 70/101 (69.31%), Query Frame = 3
Query:  261 PRVNGAVLSQFLGNTVCVVGKVLSYQEGDSEAQLETSDGAKITVTMTPGSTWTSQYVEVIGHLHEPDKLQEFKSTDFGDMFDLRKYNEAVTLMTGKFSYLF 563
            PRVN A+++QF+G TV +VG + S+    S A ++TSDG  +TV   PG+ ++S++VEVIG +     L+E+K T FGD FDL+ Y++ V L+ GKFS LF
Sbjct:    8 PRVNKAIMAQFVGRTVALVGSLESWT--GSMAVVKTSDGGLVTVHPQPGADYSSKFVEVIGLVQPDGSLKEYKCTSFGDDFDLKNYDKLVHLIHGKFSSLF 106          
BLAST of mRNA_E_fasciculatus_S2_contig706.15223.1 vs.
Match: Uncharacterized (protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C3J4_PYTOL)

HSP 1 Score: 86.3 bits (212), Expect = 8.950e-17
Identity = 45/101 (44.55%), Postives = 63/101 (62.38%), Query Frame = 3
Query:  261 PRVNGAVLSQFLGNTVCVVGKVLSYQEGDSEAQLETSDGAKITVTMTPGSTWTSQYVEVIGHLHEPDKLQEFKSTDFGDMFDLRKYNEAVTLMTGKFSYLF 563
            PRVN   +  F+G TV +VG V S+    +   L TSDG  + V   PGS ++S++VEVIG + + + LQEFK+T FGD FDL  Y++ V +   KF +LF
Sbjct:   12 PRVNKKTMGSFVGRTVAIVGAVESHMP--TAVVLRTSDGGMVNVNPMPGSDYSSKFVEVIGRVVDNNTLQEFKTTLFGDNFDLETYDQFVQVAQSKFRHLF 110          
BLAST of mRNA_E_fasciculatus_S2_contig706.15223.1 vs.
Match: Uncharacterized (protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484EA13_BRELC)

HSP 1 Score: 84.3 bits (207), Expect = 4.170e-16
Identity = 46/102 (45.10%), Postives = 63/102 (61.76%), Query Frame = 3
Query:  258 TPRVNGAVLSQFLGNTVCVVGKVLSYQEGDSEAQLETSDGAKITVTMTPGSTWTSQYVEVIGHLHEPDKLQEFKSTDFGDMFDLRKYNEAVTLMTGKFSYLF 563
            +PRVN   +  ++G+TV VVG V  +    +   L TSDG  + VT  PGS + S+ VEVIG + + + LQEFK+T FGD FDL  Y++ V L   K+ YLF
Sbjct:   10 SPRVNKTTMGGYVGHTVAVVGTVEKHSP--TAVVLRTSDGGIVNVTPQPGSDYGSKVVEVIGRVVDSETLQEFKTTLFGDNFDLDVYDQFVQLSHSKYKYLF 109          
BLAST of mRNA_E_fasciculatus_S2_contig706.15223.1 vs.
Match: Replication (factor A protein 3 n=1 Tax=Basidiobolus meristosporus CBS 931.73 TaxID=1314790 RepID=A0A1Y1YC96_9FUNG)

HSP 1 Score: 83.2 bits (204), Expect = 8.790e-16
Identity = 43/102 (42.16%), Postives = 68/102 (66.67%), Query Frame = 3
Query:  258 TPRVNGAVLSQFLGNTVCVVGKVLSYQEGDSEAQLETSDGAKITVTMTPGSTWTSQYVEVIGHLHEPDKLQEFKSTDFGDMFDLRKYNEAVTLMTGKFSYLF 563
            TPR+N ++L Q    TV +VGKV+  QEG   A +E+SD  +I+V++ PG+T+++ YVE+IG + +   +QE  S+ FG+ FDL  YN  V L + K++ +F
Sbjct:    5 TPRINSSMLGQHTNKTVRIVGKVMQLQEGS--ALIESSDHGQISVSLNPGTTFSTPYVEIIGIVQQDLSVQELTSSGFGENFDLDNYNSLVEL-SRKYTEIF 103          
BLAST of mRNA_E_fasciculatus_S2_contig706.15223.1 vs.
Match: Uncharacterized (protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H303_PHYRM)

HSP 1 Score: 82.8 bits (203), Expect = 1.580e-15
Identity = 43/102 (42.16%), Postives = 65/102 (63.73%), Query Frame = 3
Query:  258 TPRVNGAVLSQFLGNTVCVVGKVLSYQEGDSEAQLETSDGAKITVTMTPGSTWTSQYVEVIGHLHEPDKLQEFKSTDFGDMFDLRKYNEAVTLMTGKFSYLF 563
            +PRVN   +  ++G+TV +VG V S+    +  +L TSDG  + VT  PG+ + S+ VEVIG + + + +QEFK+T FGD FDL  Y++ V L   K+ +LF
Sbjct:   13 SPRVNKKTMGAYVGHTVALVGAVESHTP--TAVKLRTSDGGIVNVTPQPGTDYGSKVVEVIGRVTDSESIQEFKTTLFGDNFDLDVYDQFVQLAQSKYKHLF 112          
BLAST of mRNA_E_fasciculatus_S2_contig706.15223.1 vs.
Match: Uncharacterized (protein n=9 Tax=Peronosporaceae TaxID=4777 RepID=A0A225WD33_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 7.550e-15
Identity = 44/102 (43.14%), Postives = 63/102 (61.76%), Query Frame = 3
Query:  258 TPRVNGAVLSQFLGNTVCVVGKVLSYQEGDSEAQLETSDGAKITVTMTPGSTWTSQYVEVIGHLHEPDKLQEFKSTDFGDMFDLRKYNEAVTLMTGKFSYLF 563
            +PRVN   +  ++G+TV +VG V S+    +   L TSDG  + VT  PGS + S+ VEVIG + + + +QEFK+T FGD FDL  Y++ V L   K+  LF
Sbjct:   13 SPRVNKKTMGAYVGHTVALVGAVESHSP--TAVVLRTSDGEIVNVTPQPGSDYGSKVVEVIGRVVDTETIQEFKTTLFGDNFDLDVYDQFVQLSQSKYKQLF 112          
BLAST of mRNA_E_fasciculatus_S2_contig706.15223.1 vs.
Match: Metal-dependent (amidohydrolase 3 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1B2V0_PLAHL)

HSP 1 Score: 87.8 bits (216), Expect = 1.180e-14
Identity = 46/102 (45.10%), Postives = 67/102 (65.69%), Query Frame = 3
Query:  258 TPRVNGAVLSQFLGNTVCVVGKVLSYQEGDSEAQLETSDGAKITVTMTPGSTWTSQYVEVIGHLHEPDKLQEFKSTDFGDMFDLRKYNEAVTLMTGKFSYLF 563
            +PRVN   +S+++G TV +VG V S++   +   L TSDG  + VT  PGS + S++VEVIG + + + +QEFK+T FGD FDL  Y+  V L T K+ +LF
Sbjct:  548 SPRVNKKTMSEYIGTTVALVGAVESHRP--TAVVLRTSDGGIVNVTPQPGSDYGSRFVEVIGRVIDSETIQEFKTTLFGDNFDLDVYDNFVQLSTTKYKHLF 647          
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig706.15223.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Uncharacterized2.910e-6795.54protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVA2... [more]
Uncharacterized1.620e-2049.50protein n=3 Tax=Aphanomyces TaxID=100860 RepID=A0A... [more]
Aste57867_129668.090e-2048.51protein n=1 Tax=Aphanomyces stellatus TaxID=120398... [more]
Uncharacterized5.230e-1947.52protein n=1 Tax=Aphanomyces euteiches TaxID=100861... [more]
Uncharacterized8.950e-1744.55protein n=1 Tax=Pythium oligandrum TaxID=41045 Rep... [more]
Uncharacterized4.170e-1645.10protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A... [more]
Replication8.790e-1642.16factor A protein 3 n=1 Tax=Basidiobolus meristospo... [more]
Uncharacterized1.580e-1542.16protein n=1 Tax=Phytophthora ramorum TaxID=164328 ... [more]
Uncharacterized7.550e-1543.14protein n=9 Tax=Peronosporaceae TaxID=4777 RepID=A... [more]
Metal-dependent1.180e-1445.10amidohydrolase 3 n=1 Tax=Plasmopara halstedii TaxI... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig706contigE_fasciculatus_S2_contig706:11674..16519 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score221.5
Seed ortholog evalue2e-55
Seed eggNOG ortholog2880.D7FVA2
Model size1514
Hectar predicted targeting categoryother localisation
Exons5
EggNOG free text desc.Replication factor A protein 3
EggNOG OGs2C2US@1,2S5GF@2759
Ec32 ortholog descriptionReplication factor A protein 3
Ec32 orthologEc-14_000330.1
Cds size339
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig706.15223.1prot_E_fasciculatus_S2_contig706.15223.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig706 12607..16277 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842366.195758-UTR-E_fasciculatus_S2_contig706:11673..126061696842366.195758-UTR-E_fasciculatus_S2_contig706:11673..12606Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig706 11674..12606 -
1696842366.2700322-UTR-E_fasciculatus_S2_contig706:16277..165191696842366.2700322-UTR-E_fasciculatus_S2_contig706:16277..16519Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig706 16278..16519 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842366.2140698-CDS-E_fasciculatus_S2_contig706:12606..126831696842366.2140698-CDS-E_fasciculatus_S2_contig706:12606..12683Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig706 12607..12683 -
1696842366.2253668-CDS-E_fasciculatus_S2_contig706:13100..131831696842366.2253668-CDS-E_fasciculatus_S2_contig706:13100..13183Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig706 13101..13183 -
1696842366.2361617-CDS-E_fasciculatus_S2_contig706:14119..141691696842366.2361617-CDS-E_fasciculatus_S2_contig706:14119..14169Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig706 14120..14169 -
1696842366.247169-CDS-E_fasciculatus_S2_contig706:15326..154491696842366.247169-CDS-E_fasciculatus_S2_contig706:15326..15449Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig706 15327..15449 -
1696842366.2586036-CDS-E_fasciculatus_S2_contig706:16271..162771696842366.2586036-CDS-E_fasciculatus_S2_contig706:16271..16277Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig706 16272..16277 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig706.15223.1

>prot_E_fasciculatus_S2_contig706.15223.1 ID=prot_E_fasciculatus_S2_contig706.15223.1|Name=mRNA_E_fasciculatus_S2_contig706.15223.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=113bp
MAEFQTPRVNGAVLSQFLGNTVCVVGKVLSYQEGDSEAQLETSDGAKITV
TMTPGSTWTSQYVEVIGHLHEPDKLQEFKSTDFGDMFDLRKYNEAVTLMT
GKFSYLFYNPQE*
back to top

mRNA from alignment at E_fasciculatus_S2_contig706:11674..16519-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig706.15223.1 ID=mRNA_E_fasciculatus_S2_contig706.15223.1|Name=mRNA_E_fasciculatus_S2_contig706.15223.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=4846bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig706:11674..16519- (Ectocarpus fasciculatus EfasUO2)
GTTGTCTCCTCACACACCTGGACACTTCTTTTCGTGCACCATCAGGTCAA TCGCAAGAGGCTGCTATACGTGTGTGTGTTTCCCAGGAGAGATTAGGTGG CACCCGGCGTTACATTTCGAAATACCGGCACCAACAATCTCTTGATTTGA GTTGATCGCACTTTGTCTTCGAACAGCAGTGTCGAGGAGGGCATCATCCA CCAGGCCTTCCCTTCACCTCCCCCCCTTCTGCTACCGACAACATGGCGGT GAGAGATCCCTTCACGCGGGACGAGGCTAGCTCGCATGCAGTGTTTGGTT GGGTGCTTGCTCGAGAATCTTCCGTCTAACGCGAAACATACATTTTGAAT TTGTGCGGTATTTGAATTTGAATCTCTTCCCGCCCGCCCGCTCTCTCCTG CCCAACTACACAGCAGCTGCTGTTCAGCACTCTTATTGTACATACTTCGC ACATGCAATACCTACATTTGTCCTTTCTTGTCCTCCTCTCTCTGCCGACG GGAGACCGTTGGCAGTCGCCAGCAGGGAGAAGTTTAGTCTCGGTTGGCAT GGCGTAAAAATAGAATAGTAGTACTGACTGACCCTGCAGCCCTGGTATCG TATCGGATCACAAGACTAATGTATGTAGTCTACCCTTTACTTCGTTGGCT TTCGATTGAGTCAAGTCAAACGTGTTATTTCGTGGCTCTGCAACTCGGAC AGCTGTGTGTAATGAATGACATGCAATCTGAGCAGGCCAGAGAGGGGTGG TCTTGAAATCGTGAACGGGGCCAGACAATTCAGCAGTTAGACCATCACCC GGCAACCAACCGTGAGGGCATCAAACAAGTCAGCATACGCACCTTGTACC ATGACGTAAAATCACAGGTGGCGTGAGGGCAAAAGTAGAACTACTGCTGT GTCTGTTGTGCACACTGCTGTGTTTCGGGGGGAGCTATTGATGATACAAT CGTGAATTTCAACTGACCATTTGCACGTCCATTCGTGGTTGTGTGTGTGC CTGTTTTACCGTCAAACTTTGCTACAAAACGTAAACGTTCCACGGTACGA CCGACGGGTTGGCGGAACAGGAGTTCCAGACACCTCGCGTCAATGGGGCA GTGCTGAGCCAGTTCTTGGGCAACACGGTGTGCGTGGTGGGGAAGGTCTT GTCGTACCAAGAGGGAGATTCAGAGGCACAACTCGAGACATCGGTGAGAA AACTATTATACAATATCTATAATATGTAGTCTAGATACCGAATTACCTCG GTATTGTATTGCATACAATAGCACACGCTGTTTCGTGCTTTGTTCGTTCG GGCCGGCATTTTTTGTTCGTCCCAAGCATGAACGGGCGCCAGTCCGCTTT TCCACACGTTCGGTAGTTGGTAGGTCAAGATAATCCTTATATGATCTTTG TATGGTGGCGACCTAGTCATGATGTTGACATGATCTTTGTAAGGACCATT CTCCACCATGGTCGTCATCCTTAGACTACAAGGTTTACGCAAGGATGGTG TCCACCATCTAGTCTACAGTATGTATGTATGTATTTATGTATGTATGTTT GTATGTTTGGCGCAGCAGTCACACAGGAGGAATTAATTCCCCGCCGTTAA TCCTGCGGTGCTTGACTTGAACCTTCTTCTTTGTTTCTTTGTCACGAGAA GGGTACTGTAGAATACTTGGTTCAGCAGTCAGTCCCTCTTCAGTTTGTGG CGTGTCTGCAGACTATTGTAGCTTTGAAGTATTCCTTTCGCTTGAAGATG GCCCCTGAAAGACCTGGTCTTTTGGCCAGGTTAGTGTTGGGGTTAACGTT ACCAACAGCAGTCCTGCGGGCATCTTTCTATGGACGACGGGGTGATAACC TTGCGTTCCACGTTGACCTTCACCTACTACCCACTGTCCAAGGCAAGGAA ACAGTCTCGGCCAGTGAGTCAGTGACTACATCTAGATTCTTCACCCATTC GGAAGTTCGGTTGTCGAGTTTACCGTTTGTTATCCTTGACGAACGGTGTC TGGTCTCTCTCTCTCGACCTCGCCCCGTGTCTGACCTACCTAGTCTACGT ACAGTGCACTCCAATAGATTCCTCGGTTGTGGTGCTATCACCGTTTTTAT TGTGTATCTGAACGCGTCCGGAGCTCTTCATCGAGAGCCCTCCCGTACCT ACAACGTCGTCTTGCTACGGACGTAGTGCACATGAACGTTGAATTTCATG TCGCGGTCTAATGAGACGCGATTCTGCTCTCTCTGCTTGCATACCCGCTG CTGTCGCCGTGTGTGCCGTGCTGACTGCTGGCCATGGGGTGCTCTGCGAC AATGGCATTGCTGACGTATTGCGTTGGACGGGTGCATATGATATGCATAG GATGGGGCGAAGATTACGGTTACAATGACGCCAGGGAGTACATGGACCAG GTACAGATAGTGTGTACGCTATCAGTAGCATGAGCAGCTCGGTGCCTATC CAACACCCTCCTTTGCATATCGTCTTGTTCCCAGGGAATGTTGCTGCTCA TATGTACTGCAACAACTGCTTCTCATGTTGCACTAGTTTTCAACGATATA CGTACGTGCAGCTCCTTCTGTCGAAAATCCTGCCGCGGCGATTCGTCCGT TGTCTGTCTTGATGGTTTTTTTTTGTCCCCGATCGATGCTCTCTCTCTCT TGTTGGTTGTTTTTCCCGTTGAACGGTTCGCCGCCGTTACATGCTCCACT GTCCGAGAGTGCGGCGCATTTACCGTTTATTGGCACATACCATGACCACC TGTATCATACATGTCGCCACTAAGTGGCGGGTGCACTTGTACGTGGTACC CTCTGCATGCATGCTGACATCGCAGGGTACAAGAGAGAATGAATGTGGCT GACACCACACAATGGTTTCTGACTGACTCGAGAGCACAGTGGTAGGACAC AGCACACAGATAAACAGCAGTCACACAAGTCGTTCTCCACCACGACATGC ATTGTGGTTTGTTGTCTAATCTACGCTGGGCCGTATGCGTACGGCGGAGT AGGCACGAAGGAGAGGAGAGTCTGTTTGACAGTCTCTTTGACAGTCTCTT TGACCCACCCTTTCTTCGTGCTGCTCGCGCCTCTGTAAAATGTAAGTGTA TCAAGCATTTGGTACCATGACGTGCGTTTACTTGTTTCTGTTGCTGCACT CACAACCACAAACAAACGCTGGCAGACTCTGCCTCTCACGTTGATGGATG AGATAATAGATAATACAGTAGTGTCTTGTTCGTCGTGTGATCCATGTTTC TTCTTCCTTTCAAACACACTGAAAGCCCTTGCAACGACTTCATCCCATGT GGTGGTGGCTTGCTCGTACATTGCATTGCATTGCAGTCAGTACGTGGAAG TGATCGGACACCTTCACGAGCCCGACAAGCTGCAAGAGTTCAAGTCGACG GACTTCGGGGACATGTTTGGTGAGATGGGAGGGGGCATGACCATGAGACA CGGAACAAACGTATGGTAGCCAGCATTTCATGCTTTTCGTTTCTACATGG TTTTGCCTCCTGAGTGCTACTTGGCTTGTTCGACCGTTTGGACGAACTAA AAGGTGGCTTTGAACTACAATACATGTAGACACACCTTTTTGTACTACGA TAAGTTTTGTCCATTGTAAATTTACCACCATGCCTTTTTTCGTGCCTTTT GTATGATTCAGCAAGCAGCTCTCATTGCGACAGACGGGGCCTGTTCCTTA TTCGCATGCTGATACTACAGGGCACGTCCATTCCGCGTGTGTGTGACGTT ACTGTTGCCGTTGATGTTGATTCTGCTGCTGATGTTACACCCCTTCCAAT CTCGTCCGTTGATGTCGCGGCGCCCCTTCTTGGCAGACTTGAGGAAGTAC AACGAGGCGGTCACGCTGATGACAGGGAAGTTCAGCTATTTGTTCTACAA CCCGCAAGAGTAGACCGTGCTCGTGTAGATGGGATGGGATGGGTCGTTCC ATATTTTTGTCGTACAGCAGTACCGCACTGTGTTTTTCGCCCTATCATCT CTCATAGTGTGTGGTTAGGGTAGAAAAGGGAGCACAGGAGCGGTGTCAAG TCGAGAGTCAGTCGTGTTCGCAACTGGTCCAACTACAATAGGCTGTTCCG GGACATTTTCCGTCCGTACATGTTGTTGTTGTTGCTGCCCTTAGTGGTGT CGTGGGATGTTTTGGTGTTTTGGTACATAGTCTAATTTTGTTTGTTCCTG CCGTATGCACACATGGGCGAGGGCTGTTTCGGCGCGGCTAGTCTGGAGAA CAGTCTGTAGAACGGTGCTCTTCTTTGTCATCCAAAGACTCTTGATGTGA TAACCTTCGACTATGCTCGAGGCTGGGCAAGTTCCCGGTTACCACGTAGT TTGCTGTCGGACGTAGGTATCTTTGTAGAGCTTACGTGTCGGTGCGGACG TAGTGCAGTCAGTCAGGTTGTTGTTCTTGCCTTCAGGTTTGGATTGAAAC TTGTCGAGTCAAGCTTTCTGCGCAACGTTGTACACTTTGACACCCTGCTG TTGGTTGGACATATGCTAGCAGTTTGTCGTGGCACGGTCGTCCACGTACC CGAGTACCTCCGCTTGCAGCGCCCCGCTTCGGCATTTTGCATCGCTTTTA GTGGTCAGTCCAGCCAACGGCGTGGCGTGTCGTGTGCTATTTTGCATTAT TCGCCCGAGGTCAAATGTCGCGGACTTGTCGCAGAAGCATTGAGAAGTTC GAATTTACTTCTAGCTTGAGGGAGTGTCCCCAAGCACTGCGGTACTCCCA AAAGTTGAAAACCAACTACAAGTAGTAGCCCATCTAACCTTTAGCCCATC ACCAAGTTGCCATCACAGCTGTTTATACGAAGTAGCAATCTTCCGG
back to top

Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig706:11674..16519-

>mRNA_E_fasciculatus_S2_contig706.15223.1 ID=mRNA_E_fasciculatus_S2_contig706.15223.1|Name=mRNA_E_fasciculatus_S2_contig706.15223.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=339bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig706:11674..16519- (Ectocarpus fasciculatus EfasUO2)
ATGGCGGAGTTCCAGACACCTCGCGTCAATGGGGCAGTGCTGAGCCAGTT
CTTGGGCAACACGGTGTGCGTGGTGGGGAAGGTCTTGTCGTACCAAGAGG
GAGATTCAGAGGCACAACTCGAGACATCGGATGGGGCGAAGATTACGGTT
ACAATGACGCCAGGGAGTACATGGACCAGTCAGTACGTGGAAGTGATCGG
ACACCTTCACGAGCCCGACAAGCTGCAAGAGTTCAAGTCGACGGACTTCG
GGGACATGTTTGACTTGAGGAAGTACAACGAGGCGGTCACGCTGATGACA
GGGAAGTTCAGCTATTTGTTCTACAACCCGCAAGAGTAG
back to top