mRNA_E_fasciculatus_S2_contig705.15212.1 (mRNA) Ectocarpus fasciculatus EfasUO2
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Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig705.15212.1 vs.
Match: L51_S25_CI-B8 (domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G779_ECTSI) HSP 1 Score: 262 bits (670), Expect = 1.140e-83 Identity = 124/129 (96.12%), Postives = 129/129 (100.00%), Query Frame = 2
Query: 35 MATRGVFQLRKLTLKYCEHSGSSKGAREFIRNRIVEFANNTPAAEVVTELRPGQHPYIMGDYVSGEVKTIGIKNIAPGEIMDYAMMLRNSSGHKVRKFKKPVESRYPSIQGVWDIEAPLHTTDIHVEHH 421
MATRGVFQLRKLTLKYC+HSGSSKGAREFIR+RIVEFANNTPAAEVVTELRPG+HPYIMGDYV+GEVKTIGIKNIAPGEIMDYAMMLRNSSGHKVRKFKKPVESRYPSIQGVWDI+APLHTTDIHVEHH
Sbjct: 1 MATRGVFQLRKLTLKYCDHSGSSKGAREFIRHRIVEFANNTPAAEVVTELRPGKHPYIMGDYVTGEVKTIGIKNIAPGEIMDYAMMLRNSSGHKVRKFKKPVESRYPSIQGVWDIDAPLHTTDIHVEHH 129
BLAST of mRNA_E_fasciculatus_S2_contig705.15212.1 vs.
Match: Thioredoxin-like (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEX9_9STRA) HSP 1 Score: 131 bits (329), Expect = 4.260e-33 Identity = 60/128 (46.88%), Postives = 82/128 (64.06%), Query Frame = 2
Query: 35 MATRGVFQLRKLTLKYCEHSGSSKGAREFIRNRIVEFANNTPAAEVVTELRPGQHPYIMGDYVSGEVKTIGIKNIAPGEIMDYAMMLRNSSGHKVRKFKKPVESRYPSIQGVWDIEAPLHTTDIHVEH 418
MATRGV QL+++ ++YC+ GSS+G R+FI +V FA P E++TE+R +HP I DY++G KT+G+KN AP I D+ LR ++G K R+F KPV SR PS+QG WD E V H
Sbjct: 1 MATRGVMQLQRIHIRYCDWGGSSQGMRDFIGRELVAFAKAVPHCEIITEVRRNRHPIIRADYLTGIPKTLGVKNEAPSAIRDFLHRLRTTTGRKQRRFDKPVVSRLPSVQGAWDPEVAYQAMRTTVRH 128
BLAST of mRNA_E_fasciculatus_S2_contig705.15212.1 vs.
Match: L51_S25_CI-B8 (domain-containing protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024G7B8_9STRA) HSP 1 Score: 119 bits (298), Expect = 1.150e-28 Identity = 56/124 (45.16%), Postives = 84/124 (67.74%), Query Frame = 2
Query: 35 MATRGVFQLRKLTLKYCEHSGSSKGAREFIRNR-IVEFANNTPAAEVVTELRPGQHPYIMGDYVSGEVKTIGIKNIAPGEIMDYAMMLRNSSGHKVRKFKKPVESRYPSIQGVW--DIEAPLHT 397
MATRG++QL+++T++YC+HSGSS+ R+F+ N+ +EF P TEL+PG+HP ++GDYV+ + K +KN IM LR+SSG K+ K K+PV ++ PSIQG+W D++ P T
Sbjct: 1 MATRGIWQLKEVTIRYCQHSGSSRHVRDFLSNKQFLEFVKENPQVSFRTELKPGRHPVLIGDYVTNQQKVCDVKNKEQKVIMLQLQRLRDSSGRKMTKMKRPVITKCPSIQGIWQQDMQFPEFT 124
BLAST of mRNA_E_fasciculatus_S2_contig705.15212.1 vs.
Match: Uncharacterized (protein AlNc14C277G10065 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WUQ8_9STRA) HSP 1 Score: 119 bits (297), Expect = 1.600e-28 Identity = 56/124 (45.16%), Postives = 83/124 (66.94%), Query Frame = 2
Query: 35 MATRGVFQLRKLTLKYCEHSGSSKGAREFIRNR-IVEFANNTPAAEVVTELRPGQHPYIMGDYVSGEVKTIGIKNIAPGEIMDYAMMLRNSSGHKVRKFKKPVESRYPSIQGVW--DIEAPLHT 397
MATRG++QL++LT++YC+HSGSS+ R+F+ N+ ++F P TEL+PG+HP ++GDYV+ E K +KN IM LR+SSG K+ + K+P+ S+ PSIQG+W D+ P T
Sbjct: 1 MATRGIWQLKELTIRYCQHSGSSRYIRDFLNNKKFIDFVKENPQVAFRTELKPGRHPVLIGDYVTNEQKVCDVKNKEEKWIMLQLQRLRDSSGRKMTRMKRPIISKRPSIQGIWQQDMRFPEFT 124
BLAST of mRNA_E_fasciculatus_S2_contig705.15212.1 vs.
Match: Hypothetical (protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2W7Q4_9STRA) HSP 1 Score: 119 bits (297), Expect = 4.160e-28 Identity = 61/131 (46.56%), Postives = 78/131 (59.54%), Query Frame = 2
Query: 26 RIVMATRGVFQLRKLTLKYCEHSGSSKGAREFIRN-RIVEFANNTPAAEVVTELRPGQHPYIMGDYVSGEVKTIGIKNIAPGEIMDYAMMLRNSSGHKVRKFKKPVESRYPSIQGVWDIEAPLHTTDIHVE 415
+I+MATRGV QL+KL + YCEH GSS REFI + +IV FA P+ V+ +LR G HPYI G Y++G K I IKN I+ ML N+SG K+ K K + PSIQGVW + + VE
Sbjct: 28 KIIMATRGVKQLQKLRIVYCEHGGSSASIREFISSGKIVSFAEKNPSVTVIAQLRNGNHPYIKGQYLTGNSKQICIKNETVPRIVKVVHMLNNTSGRKITKLGKSTRTATPSIQGVWTPMLDISDSSFQVE 158
BLAST of mRNA_E_fasciculatus_S2_contig705.15212.1 vs.
Match: Hypothetical (protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1GKP3_CYCTE) HSP 1 Score: 114 bits (285), Expect = 9.650e-27 Identity = 58/127 (45.67%), Postives = 80/127 (62.99%), Query Frame = 2
Query: 35 MATRGVFQLRKLTLKYCEHSGSSKGAREFIRN-RIVEFANNTPAAEVVTELRPGQHPYIMGDYVSGEVKTIGIKNIAPGEIMDYAMMLRNSSGHKVRKFKKPVESRYPSIQGVWDIEAPLHTTDIHV 412
MATRGV+QL +L L YCEH GSS+ R++I + RIV++A + P EV +R G+HP I G+Y++G+ K I +KN I ML NSSG K++K K+ V ++ PS+QGVW L T V
Sbjct: 1 MATRGVYQLARLRLVYCEHGGSSRTIRDYISSGRIVQWAKDHPHVEVEVHVRNGKHPLIEGEYLTGQPKQITVKNQTMERIQQVVDMLHNSSGRKIKKLKRTVVTQTPSVQGVWTPMLDLQNTKFTV 127
BLAST of mRNA_E_fasciculatus_S2_contig705.15212.1 vs.
Match: Hypothetical (protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3V4V6_9STRA) HSP 1 Score: 114 bits (285), Expect = 1.250e-26 Identity = 58/117 (49.57%), Postives = 74/117 (63.25%), Query Frame = 2
Query: 26 RIVMATRGVFQLRKLTLKYCEHSGSSKGAREFIRNR-IVEFANNTPAAEVVTELRPGQHPYIMGDYVSGEVKTIGIKNIAPGEIMDYAMMLRNSSGHKVRKFKKPVESRYPSIQGVW 373
RI MATRGV QL KL + +CEH GSS RE+I+ IV+FA + P EV +LR G+HPYI +Y++G K + +KN I D ML NSSG K+ K PV + PS+QGVW
Sbjct: 9 RIKMATRGVKQLAKLRVVFCEHGGSSNLVREYIKTGGIVQFATDNPTVEVEAKLRNGKHPYIKAEYITGFSKQVCVKNEPLERIQDVMTMLNNSSGRKISKIGNPVRTDTPSVQGVW 125
BLAST of mRNA_E_fasciculatus_S2_contig705.15212.1 vs.
Match: Hypothetical (protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CP68_9STRA) HSP 1 Score: 114 bits (284), Expect = 1.420e-26 Identity = 54/114 (47.37%), Postives = 72/114 (63.16%), Query Frame = 2
Query: 35 MATRGVFQLRKLTLKYCEHSGSSKGAREFIRNRIVEFANNTPAAEVVTELRPGQHPYIMGDYVSGEVKTIGIKNIAPGEIMDYAMMLRNSSGHKVRKFKKPVESRYPSIQGVWD 376
M TRGV+QL++LTL+YC SGSS G REF+R+ +VEFA P V T +RP +HP +GDY++G K +KN + LR+ G KV++ PV S PS+QGVWD
Sbjct: 9 MCTRGVWQLKELTLRYCRSSGSSAGVREFMRDGLVEFARTNPQLTVRTVVRPNRHPNAIGDYLNGNTKVTDLKNKDAEAVGAVLQRLRDDGGRKVQRHHVPVRSSAPSVQGVWD 122
BLAST of mRNA_E_fasciculatus_S2_contig705.15212.1 vs.
Match: Probable (54S ribosomal protein L51, mitochondrial n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9RFE5_9CHLO) HSP 1 Score: 112 bits (281), Expect = 3.360e-26 Identity = 53/126 (42.06%), Postives = 82/126 (65.08%), Query Frame = 2
Query: 35 MATRGVFQLRKLTLKYCEHSGSSKGAREFIRNRIVEFANNTPAAEVVTELRPGQHPYIMGDYVSGEVKTIGIKNIAPGEIMDYAMMLRNSSGH------KVRKFKKPVESR-------YPSIQGVW 373
MA GV+QLRKLTL +C SGSS+GAR F+ + + F P +++ ELRPGQHPY+ +Y +G V+T+G+KN P E++ +A+MLR+++G KVR+ + +++ PS+QG+W
Sbjct: 1 MARLGVWQLRKLTLNFCSFSGSSRGARAFVEDFLPTFKQENPHLQIIEELRPGQHPYLKAEYRNGRVRTVGVKNELPNEVLRHAVMLRSAAGRATHVKVKVRQTQPAIKTEDGQHRRASPSVQGMW 126
BLAST of mRNA_E_fasciculatus_S2_contig705.15212.1 vs.
Match: 54S (ribosomal protein L51, mitochondrial-like n=1 Tax=Ipomoea nil TaxID=35883 RepID=UPI000900E4B3) HSP 1 Score: 111 bits (277), Expect = 8.460e-26 Identity = 54/119 (45.38%), Postives = 73/119 (61.34%), Query Frame = 2
Query: 35 MATRGVFQLRKLTLKYCEHSGSSKGAREFIRNRIVEFANNTPAAEVVTELRPGQHPYIMGDYVSGEVKTIGIKNIAPGEIMDYAMMLRNSSGHKVRKFKKPVESRYPSIQGVWDIEAPL 391
MA RGV+QL+KL + YC GSSKG REFI + + F P EVVTEL GQHP++ G Y + + + ++N+ P EI+ A LRNS G KV K K +++PS+QG W E +
Sbjct: 1 MALRGVWQLQKLVVSYCNWGGSSKGLREFIESHLPAFKEVNPHLEVVTELNRGQHPFLKGLYKNKNERAVSVRNLNPEEILLEATRLRNSLGRKVVKMKTRHVTKHPSVQGTWSTELKM 119 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig705.15212.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig705.15212.1 >prot_E_fasciculatus_S2_contig705.15212.1 ID=prot_E_fasciculatus_S2_contig705.15212.1|Name=mRNA_E_fasciculatus_S2_contig705.15212.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=131bp MATRGVFQLRKLTLKYCEHSGSSKGAREFIRNRIVEFANNTPAAEVVTELback to top mRNA from alignment at E_fasciculatus_S2_contig705:14369..16888- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig705.15212.1 ID=mRNA_E_fasciculatus_S2_contig705.15212.1|Name=mRNA_E_fasciculatus_S2_contig705.15212.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=2520bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig705:14369..16888- (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig705:14369..16888- >mRNA_E_fasciculatus_S2_contig705.15212.1 ID=mRNA_E_fasciculatus_S2_contig705.15212.1|Name=mRNA_E_fasciculatus_S2_contig705.15212.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=393bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig705:14369..16888- (Ectocarpus fasciculatus EfasUO2)back to top |