mRNA_E_fasciculatus_S2_contig704.15204.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig704.15204.1
Unique NamemRNA_E_fasciculatus_S2_contig704.15204.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig704.15204.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KMW2_9PHAE)

HSP 1 Score: 353 bits (905), Expect = 2.950e-120
Identity = 206/268 (76.87%), Postives = 218/268 (81.34%), Query Frame = 1 
Query:    1 MALQPHGGGKNGNARGISAMRVLVLHKKSLSSQHPAGRDNHH-PESYAADDF--SAEEEKRLGMSMSIRTAVFGGMVSEGRGSLRRXXXXXXXXXXXXXXXXX--DLKGTAAHFSLPPSTLPPPAAPATPPRGTPYYEYAYEENGYPAAVSSPAGHP-TTDARGLPDTQPQVSRNVSFSEEVEEVLIENRRQTYGNKASRRQHFYSKAELATFKRAWHCHVKSSSGPVNGLMACGCPGYDCNYEEGRAPPTFQEVVPPADYNRWVWEG 786
            MAL+PHG   N NARGIS +RVLVLHKKSLS+Q  AGRDNHH PESYA D F  SAEE KR G+S   R   FGG+V E RGSLR XXXXXXXXXXXXXXXXX  D KG   HF+  P T  PP APATPP   PYYEYAYEE+ Y AA SSPAG P  TDA GLPDTQPQV+RNVSFSEEV+EVLIENRRQTYGNKASRRQHFYSKAELATFKRAWHCHVKSSS PVNGLMACGCPG D +Y+EGRAPPT Q+VVPP DYNRWVWEG
Sbjct:    1 MALRPHGSESNNNARGISELRVLVLHKKSLSTQQAAGRDNHHHPESYATDGFGSSAEEAKRFGLS--TRNVAFGGLVDEDRGSLRXXXXXXXXXXXXXXXXXXXVDSKGAPTHFASHPGTPRPPVAPATPPPRGPYYEYAYEEDDYSAAGSSPAGGPIATDASGLPDTQPQVARNVSFSEEVKEVLIENRRQTYGNKASRRQHFYSKAELATFKRAWHCHVKSSSRPVNGLMACGCPGCDYDYDEGRAPPTLQKVVPPIDYNRWVWEG 266
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BLAST of mRNA_E_fasciculatus_S2_contig704.15204.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G195_ECTSI)

HSP 1 Score: 119 bits (297), Expect = 4.860e-30
Identity = 96/141 (68.09%), Postives = 103/141 (73.05%), Query Frame = 1 
Query:    1 MALQPHGGGKNGNARGISAMRVLVLHKKSLSSQHPAGRDNHH--PESYAADDF--SAEEEKRLGMSMSIRTAVFGGMVSEGRGSLRRXXXXXXXXXXXXXXXXX---DLKGTAAHFSLPPSTLPPPAAPATPPRGTPYYEY 402
            MAL+PH    N N RGIS +RVLV HKKSLS+Q  AGRDNHH  PESYA + F  SAEEEKRLG+S   R A FG    E RGSLRRXXXXXXXXXXXXXXXXX   DLKG A HF+  PST  PPAAPATPP  + YYEY
Sbjct:    1 MALRPHDPRSNNNMRGISELRVLVRHKKSLSTQQAAGRDNHHHHPESYATNGFGLSAEEEKRLGLS--TRNAAFG----EDRGSLRRXXXXXXXXXXXXXXXXXXXVDLKGAATHFASHPSTPRPPAAPATPPPRSTYYEY 135
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig704.15204.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized2.950e-12076.87protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5... [more]
Uncharacterized4.860e-3068.09protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig704contigE_fasciculatus_S2_contig704:24379..26906 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start1
Model size789
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-18_004620.1
Cds size789
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842364.490367-CDS-E_fasciculatus_S2_contig704:24378..246361696842364.490367-CDS-E_fasciculatus_S2_contig704:24378..24636Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig704 24379..24636 -
1696842364.5049047-CDS-E_fasciculatus_S2_contig704:26375..269061696842364.5049047-CDS-E_fasciculatus_S2_contig704:26375..26906Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig704 26376..26906 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig704.15204.1prot_E_fasciculatus_S2_contig704.15204.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig704 24379..26906 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig704.15204.1

>prot_E_fasciculatus_S2_contig704.15204.1 ID=prot_E_fasciculatus_S2_contig704.15204.1|Name=mRNA_E_fasciculatus_S2_contig704.15204.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=263bp
MALQPHGGGKNGNARGISAMRVLVLHKKSLSSQHPAGRDNHHPESYAADD
FSAEEEKRLGMSMSIRTAVFGGMVSEGRGSLRRRRKGGLAAAARTGGGGG
DLKGTAAHFSLPPSTLPPPAAPATPPRGTPYYEYAYEENGYPAAVSSPAG
HPTTDARGLPDTQPQVSRNVSFSEEVEEVLIENRRQTYGNKASRRQHFYS
KAELATFKRAWHCHVKSSSGPVNGLMACGCPGYDCNYEEGRAPPTFQEVV
PPADYNRWVWEG*
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mRNA from alignment at E_fasciculatus_S2_contig704:24379..26906-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig704.15204.1 ID=mRNA_E_fasciculatus_S2_contig704.15204.1|Name=mRNA_E_fasciculatus_S2_contig704.15204.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=2528bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig704:24379..26906- (Ectocarpus fasciculatus EfasUO2)
ATGGCCCTGCAACCGCACGGGGGGGGAAAAAACGGCAACGCGCGCGGGAT
CTCGGCAATGCGGGTGCTCGTTCTCCACAAGAAGTCCTTGAGCTCGCAGC
ATCCCGCCGGCCGGGACAACCACCACCCCGAAAGCTACGCCGCCGATGAC
TTTAGTGCGGAGGAGGAAAAGAGGTTGGGGATGTCGATGTCCATCAGAAC
GGCAGTCTTCGGAGGAATGGTCAGCGAGGGCAGAGGCAGCCTGAGAAGAA
GGAGGAAAGGCGGCTTGGCTGCAGCGGCGCGCACCGGCGGCGGCGGCGGT
GACTTAAAGGGGACAGCGGCGCATTTTTCGCTCCCGCCTAGCACTCTGCC
TCCCCCTGCCGCTCCAGCTACTCCTCCTCGTGGCACTCCCTATTATGAAT
ATGCATACGAGGAGAATGGTTATCCCGCAGCAGTGTCAAGCCCAGCAGGT
CACCCGACCACCGACGCCAGGGGTCTTCCCGACACCCAACCACAGGTGTC
GCGCAATGTGTCCTTCAGCGAGGAAGTCGAGGTAAGCACCCTTCACGGGT
CTGCCACCATTTTTTTTTTTCGTTGTTGGTTTCCGGTCGCGCCTCTGTAC
TGCTGTAGGACCCTCGAGCTTCAGGTGAAGCGATCTGATGTAGACTATGC
CTTTCAGCACTCGGTCCGCAAGAAGAATAAGAACCCGGGCTTCGCTTTTT
CTGTTTTTCTGAGTACACCTAACAGGGGGGGATACACTCGACAGGCTGGG
AAGGTAAGATCCGCGCGATAACATAGGTGGACGTTTAGGTTTTTGGGGAG
CATGGATATGGAACAAGCAACTCTATGAAAATGTCGTACCACTTGCCCCT
CTTGGTTGAAGTCTAGCAATCTCTTTGTTGAGTGGGCGACTTTTATGTAG
CCGCTGGTCGCGAGCCTGTGCGGGGTCACCTCCTGTCTGTCGTGGTGCGC
CACAAGAGGTGACCACCACAAGGGCATGTACGGCTTTGATGCACTTAACC
GATGCGCGGCCTGGCGAAGGAAGTCCTGACACACCTCGGCTGCTGTGGCG
GATGAACTGTTCATTTTTATTTCATTCGGTGAGCCAACCGCCTCAGATGT
TCTCACTCATAGCCGAAAGACGGCGCAAAACAATCGCCACCGAGCCCGAA
CTTTGCTGCGGGCTCACGTACGTAGAATATATCTATGCATACGTCTAGGC
AAAATACCTTTTTTACGCGTGCCGTGTGGTACGATCGTACACAGATGCCT
CGCGAAAGAGAGCGAGGATAGTAGCCTCAGAATTGATCGGCGATGTTACA
GAGAATGGCAAACCATGGTACATGGCGTCCGTGCGTTCGGAACAGCAAGA
CATTTTCCAACGTGGAAAGCACCTCACCGTCGCCATCGAGTCTCGTGATA
CTGCAGTTTTATCGGCGCCCCCCGCCTGACCTTTTATACAGGCTGGGTCG
TAAAACGCTTTTTGCACCCACACTCAGACCAAGAGTTCGAGCTGAAAGAT
CCACAGAAGTCTCGGTTTGATTGGTGGAGAGATGACAAAACCTTTTTTTT
CCCACCTAAACTTCCAGCAAGCTGTCACATATCGGGATTACAACAGCGGA
GTCACATTTAGTGACTAAATGGAACCGAGTTGGGCGAACCGTAACCTCGA
GTTTCCAACAGGTAGTCTCCTCATCTCCTCGAGGCGAGATGCCAAAGAGA
GCACGACTGCTGTCGTTGTCGCGCTCTTGCCAAGTTGCCACACAGCAGTA
CATGATACGAGGAAGATGTTTTCACACTCGTACACCACACACAACGGGCT
CCACAGCCAACCCGTGAGCACAATAATATTTCCTCCTCGTAGACCAACAG
CAGCGCGGCAAGTAGCGGCAGGTGCTGCTGCAACGCTGCCAGCGGTGCCG
CAAGCTAGGCTAGGACAGATACAAACCGCAACTTGTGCCTCCGTTCTCTT
TGGTTTGCCCCCCTCCCGCCGAGGTTCGCGCCTGAGGCTGTTCCCGGCCC
TAGCCCTCAGGGAGCTAGCTCACTGGCCGCAGCCCCATCTCCACACAGCT
GCATACCAGTGCATTGTCAACCACAGCCTCTTCGTTGTTTTTGCCGTACA
CTCAACTCCAACTCTGGGTGTGAAGTCTGCTGGTGCAACAACGCGTTTAA
GACACGGCCCCAAACGCTTCAGGCGATCGTGGGTCAACAAACGATGATGC
TGCTGCTGCCCACGACGATGAGTAACCCCCCATTCTTCACACGCGCGTTT
CGGATGTCGTTGTATTCTAGGAAGTTCTGATCGAGAATCGACGGCAGACG
TACGGCAACAAGGCCAGCAGACGGCAACACTTCTACTCCAAGGCCGAGCT
TGCCACCTTCAAGCGTGCCTGGCACTGCCACGTCAAGTCGAGCAGCGGGC
CGGTGAATGGACTGATGGCATGCGGGTGCCCCGGCTACGACTGCAACTAC
GAAGAAGGGCGGGCACCGCCGACGTTCCAGGAGGTAGTCCCACCCGCCGA
CTACAACCGTTGGGTGTGGGAGGGATAG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig704:24379..26906-

>mRNA_E_fasciculatus_S2_contig704.15204.1 ID=mRNA_E_fasciculatus_S2_contig704.15204.1|Name=mRNA_E_fasciculatus_S2_contig704.15204.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=789bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig704:24379..26906- (Ectocarpus fasciculatus EfasUO2)
ATGGCCCTGCAACCGCACGGGGGGGGAAAAAACGGCAACGCGCGCGGGAT
CTCGGCAATGCGGGTGCTCGTTCTCCACAAGAAGTCCTTGAGCTCGCAGC
ATCCCGCCGGCCGGGACAACCACCACCCCGAAAGCTACGCCGCCGATGAC
TTTAGTGCGGAGGAGGAAAAGAGGTTGGGGATGTCGATGTCCATCAGAAC
GGCAGTCTTCGGAGGAATGGTCAGCGAGGGCAGAGGCAGCCTGAGAAGAA
GGAGGAAAGGCGGCTTGGCTGCAGCGGCGCGCACCGGCGGCGGCGGCGGT
GACTTAAAGGGGACAGCGGCGCATTTTTCGCTCCCGCCTAGCACTCTGCC
TCCCCCTGCCGCTCCAGCTACTCCTCCTCGTGGCACTCCCTATTATGAAT
ATGCATACGAGGAGAATGGTTATCCCGCAGCAGTGTCAAGCCCAGCAGGT
CACCCGACCACCGACGCCAGGGGTCTTCCCGACACCCAACCACAGGTGTC
GCGCAATGTGTCCTTCAGCGAGGAAGTCGAGGAAGTTCTGATCGAGAATC
GACGGCAGACGTACGGCAACAAGGCCAGCAGACGGCAACACTTCTACTCC
AAGGCCGAGCTTGCCACCTTCAAGCGTGCCTGGCACTGCCACGTCAAGTC
GAGCAGCGGGCCGGTGAATGGACTGATGGCATGCGGGTGCCCCGGCTACG
ACTGCAACTACGAAGAAGGGCGGGCACCGCCGACGTTCCAGGAGGTAGTC
CCACCCGCCGACTACAACCGTTGGGTGTGGGAGGGATAG
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