mRNA_E_fasciculatus_S2_contig7025.15189.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7025.15189.1
Unique NamemRNA_E_fasciculatus_S2_contig7025.15189.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7025.15189.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7025contigE_fasciculatus_S2_contig7025:5922..6182 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop0
Start1
Model size262
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Cds size165
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842362.9060419-UTR-E_fasciculatus_S2_contig7025:5921..60171696842362.9060419-UTR-E_fasciculatus_S2_contig7025:5921..6017Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig7025 5922..6017 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842362.9195964-CDS-E_fasciculatus_S2_contig7025:6017..61821696842362.9195964-CDS-E_fasciculatus_S2_contig7025:6017..6182Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7025 6018..6182 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7025.15189.1prot_E_fasciculatus_S2_contig7025.15189.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7025 6018..6182 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7025.15189.1

>prot_E_fasciculatus_S2_contig7025.15189.1 ID=prot_E_fasciculatus_S2_contig7025.15189.1|Name=mRNA_E_fasciculatus_S2_contig7025.15189.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=55bp
MISVARQPTGRTACRLARQHQRRHVGPKARAAAAAIVDTRGAEGGRFLAA
AGVSP
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mRNA from alignment at E_fasciculatus_S2_contig7025:5922..6182+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7025.15189.1 ID=mRNA_E_fasciculatus_S2_contig7025.15189.1|Name=mRNA_E_fasciculatus_S2_contig7025.15189.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=261bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7025:5922..6182+ (Ectocarpus fasciculatus EfasUO2)
TAGCCCGTAGCACGTGGTGGTGTGTGTCGCCGAGAGTGAGTCGTGGCGGG
TGGAGAACAGGGGTTGCGGTAGTGGCCTCAGCGAACCTGCGTACACATGA
TAAGCGTTGCGAGACAGCCTACGGGAAGGACGGCTTGTCGCCTTGCGCGA
CAGCACCAGCGGCGGCATGTTGGGCCGAAAGCAAGAGCTGCTGCTGCTGC
TATCGTTGACACCCGGGGCGCAGAGGGCGGCAGATTTCTTGCAGCAGCTG
GGGTGAGCCCT
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7025:5922..6182+

>mRNA_E_fasciculatus_S2_contig7025.15189.1 ID=mRNA_E_fasciculatus_S2_contig7025.15189.1|Name=mRNA_E_fasciculatus_S2_contig7025.15189.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=165bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7025:5922..6182+ (Ectocarpus fasciculatus EfasUO2)
ATGATAAGCGTTGCGAGACAGCCTACGGGAAGGACGGCTTGTCGCCTTGC
GCGACAGCACCAGCGGCGGCATGTTGGGCCGAAAGCAAGAGCTGCTGCTG
CTGCTATCGTTGACACCCGGGGCGCAGAGGGCGGCAGATTTCTTGCAGCA
GCTGGGGTGAGCCCT
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