mRNA_E_fasciculatus_S2_contig7011.15173.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7011.15173.1
Unique NamemRNA_E_fasciculatus_S2_contig7011.15173.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig7011.15173.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LDD9_ECTSI)

HSP 1 Score: 193 bits (490), Expect = 7.990e-57
Identity = 97/105 (92.38%), Postives = 97/105 (92.38%), Query Frame = 2 
Query:    2 MGNPLQATADVISHASEFVHDDQFLFFASVSRAWRGAWRNRPTSTRAITADTSPSQLRHSVDCGLSSSRRGAAVCTAIASLGRLDLLRAARALGFRWDKMTCWKA 316
            MGNP QATADVISHASEFVHDDQFLFFASVSRAWRGAWR RPTSTRAIT DTSPSQLRHSVDCGLS    G AVCTAIASLGRLDLLRAARALGFRWDKMTCWKA
Sbjct:    1 MGNPFQATADVISHASEFVHDDQFLFFASVSRAWRGAWRGRPTSTRAITPDTSPSQLRHSVDCGLSPG--GTAVCTAIASLGRLDLLRAARALGFRWDKMTCWKA 103
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BLAST of mRNA_E_fasciculatus_S2_contig7011.15173.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0J7_9PHAE)

HSP 1 Score: 114 bits (285), Expect = 4.650e-27
Identity = 58/98 (59.18%), Postives = 71/98 (72.45%), Query Frame = 2 
Query:   14 LQATADVISHASEFVHDDQFLFFASVSRAWRGAWRNRPTSTRAITADTSPSQLRHSVDCGLSSSRRGAAVCTAIASLGRLDLLRAARALGFRWDKMTC 307
            L A  D++S  +EFV D+Q+LFFASVSR WR  W  RPT T+A+TADTS  QL  S +CGL   RR AAVC  +A LGRLDLLR ARA+G +W++ TC
Sbjct:    3 LFAAVDIVSTVAEFVDDNQYLFFASVSRGWRDVWGKRPTVTKALTADTSVPQLSLSFECGL---RRTAAVCETVAGLGRLDLLRRARAMGCQWNENTC 97
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BLAST of mRNA_E_fasciculatus_S2_contig7011.15173.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMS7_ECTSI)

HSP 1 Score: 115 bits (289), Expect = 1.540e-26
Identity = 60/103 (58.25%), Postives = 72/103 (69.90%), Query Frame = 2 
Query:    2 MGNPLQATADVISHASEFVHDDQFLFFASVSRAWRGAWRNRPTSTRAITADTSPSQLRHSVDCGLSSSRRGAAVCTAIASLGRLDLLRAARALGFRWDKMTCW 310
            M   L A  D++S   EFV D+Q+LFFASVSR WR  W  RPT T+A+TADTS SQL  S +CGL   RR AAVC  +A LGRLDLLR ARA+G  W++ TC+
Sbjct:    1 MEKQLFAAVDIVSTVGEFVDDNQYLFFASVSRGWRDVWGKRPTVTKALTADTSVSQLSLSFECGL---RRTAAVCETVAGLGRLDLLRRARAMGCPWNENTCY 100
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BLAST of mRNA_E_fasciculatus_S2_contig7011.15173.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8W5_ECTSI)

HSP 1 Score: 89.7 bits (221), Expect = 2.180e-17
Identity = 49/87 (56.32%), Postives = 59/87 (67.82%), Query Frame = 2 
Query:   50 EFVHDDQFLFFASVSRAWRGAWRNRPTSTRAITADTSPSQLRHSVDCGLSSSRRGAAVCTAIASLGRLDLLRAARA-LGFRWDKMTC 307
            EFV  +Q+LFFA VSR WR AW  RPT+TRA+TADT   QL  S +CGL+   R + VC  IA+LGRLDLL +AR      WD+ TC
Sbjct:    2 EFVGGEQYLFFAGVSRTWRDAWEGRPTTTRAVTADTGVPQLSQSFECGLA---RRSTVCQDIAALGRLDLLVSAREEYECPWDEDTC 85
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BLAST of mRNA_E_fasciculatus_S2_contig7011.15173.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G822_ECTSI)

HSP 1 Score: 80.9 bits (198), Expect = 1.650e-13
Identity = 43/89 (48.31%), Postives = 55/89 (61.80%), Query Frame = 2 
Query:   41 HASEFVHDDQFLFFASVSRAWRGAWRNRPTSTRAITADTSPSQLRHSVDCGLSSSRRGAAVCTAIASLGRLDLLRAARALGFRWDKMTC 307
            + +EFV  DQ+LF A VS+A+R AW  R T TR + ADTS  QL + ++ GL SS R A +C A A  GRLDLL+ A+     W   TC
Sbjct:    3 YLAEFVDQDQYLFIAPVSKAFRRAWGPRATVTRPVVADTSVRQLTYCLELGLPSSIRQATICNAAARFGRLDLLKLAQESACGWTPATC 91
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7011.15173.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
Uncharacterized7.990e-5792.38protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LDD9... [more]
Uncharacterized4.650e-2759.18protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized1.540e-2658.25protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized2.180e-1756.32protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized1.650e-1348.31protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7011contigE_fasciculatus_S2_contig7011:3400..5060 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score73.9
Seed ortholog evalue1.3e-10
Seed eggNOG ortholog2880.D7FJY0
Model size859
KEGG koko:K06052
KEGG Pathwayko01522,ko04330,ko04371,ko04658,ko04668,ko05165,ko05200,ko05224,map01522,map04330,map04371,map04658,map04668,map05165,map05200,map05224
Hectar predicted targeting categoryother localisation
Exons2
EggNOG OGs2AMK4@1,2RZCC@2759
Ec32 ortholog descriptionAnkyrin-repeat protein
Ec32 orthologEc-25_001630.1
Cds size858
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04090
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842361.2839017-UTR-E_fasciculatus_S2_contig7011:3399..34001696842361.2839017-UTR-E_fasciculatus_S2_contig7011:3399..3400Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig7011 3400..3400 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842361.3035898-CDS-E_fasciculatus_S2_contig7011:3400..37361696842361.3035898-CDS-E_fasciculatus_S2_contig7011:3400..3736Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7011 3401..3736 +
1696842361.3156245-CDS-E_fasciculatus_S2_contig7011:4538..50601696842361.3156245-CDS-E_fasciculatus_S2_contig7011:4538..5060Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7011 4539..5060 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7011.15173.1prot_E_fasciculatus_S2_contig7011.15173.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7011 3401..5060 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7011.15173.1

>prot_E_fasciculatus_S2_contig7011.15173.1 ID=prot_E_fasciculatus_S2_contig7011.15173.1|Name=mRNA_E_fasciculatus_S2_contig7011.15173.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=286bp
MGNPLQATADVISHASEFVHDDQFLFFASVSRAWRGAWRNRPTSTRAITA
DTSPSQLRHSVDCGLSSSRRGAAVCTAIASLGRLDLLRAARALGFRWDKM
TCWKAAEGGHLEVLQWCRSNGCGWNVLTCAGAAKGGHLDILAWARQNGCD
WDEWTCTAATKEGHLEVLQYARVNGCPWNAWTCAQAAAGGHVDVLRWAHE
NGCPWDEDVCWAAAWGGHLDALEYAREAGCPWNERTCSGAAENGHLEVLQ
WARENGCPWNERTCANASRGGHDEVLRWAMDNGCA*
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mRNA from alignment at E_fasciculatus_S2_contig7011:3400..5060+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7011.15173.1 ID=mRNA_E_fasciculatus_S2_contig7011.15173.1|Name=mRNA_E_fasciculatus_S2_contig7011.15173.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1661bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7011:3400..5060+ (Ectocarpus fasciculatus EfasUO2)
CATGGGAAACCCGCTCCAAGCCACCGCCGACGTGATCTCCCACGCCTCGG
AGTTCGTCCACGACGACCAGTTCCTCTTCTTCGCCTCCGTCTCGAGGGCA
TGGAGGGGCGCCTGGCGCAACCGCCCCACCTCAACCAGAGCCATCACCGC
GGACACCTCGCCGAGCCAGCTGCGGCACAGCGTCGACTGCGGCCTCTCCA
GCAGCCGCAGGGGCGCCGCAGTATGCACCGCCATCGCCTCCCTGGGTAGG
CTCGACCTCCTGCGGGCCGCCCGCGCGCTGGGCTTCCGGTGGGACAAGAT
GACCTGCTGGAAGGCCGCGGAGGGCGGCCACCTCGAGGTATGAAGTTTGA
CAGCAGCAGTGGCAGCTAACCTTCGCTGGTTTTCGATTTTTCTACATAGT
AAGGAAACGTGTGTTGGATAAGAAAACAAAACATTCAATCTGGGCGAAAG
TTGGGATAGGGTTTTTAGGGAATCGGGTCTGCGTATCACCTGTTTGCTGT
ATTTCATCGTAATCTTACTCTACATTTGGTCGCGAAGGTGGCCCATGTAT
GAGCAGGAGGGGAGGTGGTGCGGTGGTGGATGGTGGTGATGACCGCAACT
ACAGCAGTATCATTGTTTTTTCTCGGCGGCAATAATGTAGCGATAGTAGG
TGTTCAATCCGAGGTCTGTTTGTGTGCCTGTCCTGAACATGGTGACCGCG
ACGATTTGGTTTCCGGCGCCGAAGTGCGAAGAAGGGTTCATGTGTAGAAA
GTGTTGGTTGCTTGCTGTGTGTTTGTTTGACCGTGTTCCAAACCCAGGAG
GGGAGGGCGGGTTTCTCGCCCTTGTCCCTGGGCTGTCGCGGCGTTTGGCA
GTTTCGTTTACACTTTTTCTCTTTTTTTTTCTTGGCGGTGTGCAACGGTC
TGGGTGCCTTCTTCTCGATCGGCCGCACAACCATCCCTCAACATATCAAC
AACAGCAACGATGATAGCGATCACGAGACGATGACAACCAACAACCCCAA
CAAACGATAGCGACGACAATAACGACAACGATATTTAGTAGCAACGTGCA
CGACAGCGAGCAACAACAACAACAACAACAACAACCACAAACGACGACAA
CAACTACAACGACAAAGGCAATGATACCGATAACGACAGGTGCTCCAGTG
GTGTCGGTCCAACGGCTGTGGGTGGAACGTCCTGACGTGCGCCGGGGCCG
CCAAGGGCGGCCACCTCGACATCCTGGCGTGGGCCCGCCAGAACGGATGC
GACTGGGACGAGTGGACGTGCACCGCGGCGACGAAGGAAGGGCACCTGGA
AGTCCTCCAGTACGCCCGAGTCAACGGTTGCCCGTGGAACGCCTGGACGT
GCGCGCAGGCGGCCGCCGGCGGGCACGTGGACGTTTTGCGGTGGGCGCAC
GAGAACGGCTGCCCGTGGGACGAGGACGTCTGCTGGGCGGCGGCGTGGGG
AGGACACTTGGATGCACTCGAGTACGCCAGAGAAGCAGGATGCCCGTGGA
ACGAGCGCACGTGCTCGGGAGCGGCGGAGAACGGTCATCTTGAGGTGTTG
CAGTGGGCCCGAGAGAACGGGTGTCCCTGGAACGAGCGTACCTGCGCTAA
CGCCTCGAGGGGGGGTCATGACGAGGTGCTTCGATGGGCTATGGATAATG
GCTGTGCTTGA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7011:3400..5060+

>mRNA_E_fasciculatus_S2_contig7011.15173.1 ID=mRNA_E_fasciculatus_S2_contig7011.15173.1|Name=mRNA_E_fasciculatus_S2_contig7011.15173.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=858bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7011:3400..5060+ (Ectocarpus fasciculatus EfasUO2)
ATGGGAAACCCGCTCCAAGCCACCGCCGACGTGATCTCCCACGCCTCGGA
GTTCGTCCACGACGACCAGTTCCTCTTCTTCGCCTCCGTCTCGAGGGCAT
GGAGGGGCGCCTGGCGCAACCGCCCCACCTCAACCAGAGCCATCACCGCG
GACACCTCGCCGAGCCAGCTGCGGCACAGCGTCGACTGCGGCCTCTCCAG
CAGCCGCAGGGGCGCCGCAGTATGCACCGCCATCGCCTCCCTGGGTAGGC
TCGACCTCCTGCGGGCCGCCCGCGCGCTGGGCTTCCGGTGGGACAAGATG
ACCTGCTGGAAGGCCGCGGAGGGCGGCCACCTCGAGGTGCTCCAGTGGTG
TCGGTCCAACGGCTGTGGGTGGAACGTCCTGACGTGCGCCGGGGCCGCCA
AGGGCGGCCACCTCGACATCCTGGCGTGGGCCCGCCAGAACGGATGCGAC
TGGGACGAGTGGACGTGCACCGCGGCGACGAAGGAAGGGCACCTGGAAGT
CCTCCAGTACGCCCGAGTCAACGGTTGCCCGTGGAACGCCTGGACGTGCG
CGCAGGCGGCCGCCGGCGGGCACGTGGACGTTTTGCGGTGGGCGCACGAG
AACGGCTGCCCGTGGGACGAGGACGTCTGCTGGGCGGCGGCGTGGGGAGG
ACACTTGGATGCACTCGAGTACGCCAGAGAAGCAGGATGCCCGTGGAACG
AGCGCACGTGCTCGGGAGCGGCGGAGAACGGTCATCTTGAGGTGTTGCAG
TGGGCCCGAGAGAACGGGTGTCCCTGGAACGAGCGTACCTGCGCTAACGC
CTCGAGGGGGGGTCATGACGAGGTGCTTCGATGGGCTATGGATAATGGCT
GTGCTTGA
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