mRNA_E_fasciculatus_S2_contig701.15169.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig701.15169.1
Unique NamemRNA_E_fasciculatus_S2_contig701.15169.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig701.15169.1 vs.
Match: EsV-1-7 (n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4X8_ECTSI)

HSP 1 Score: 73.9 bits (180), Expect = 7.080e-11
Identity = 46/89 (51.69%), Postives = 54/89 (60.67%), Query Frame = 3 
Query:  171 MVVVPRTSRSRHKRARDTETDAAPQDDAPSTVSEGAPSPVQLADGEQGQSRPAAAADGSAVSETLVETADQRNPLPVVTTYENSCFIDQ 437
            MVV+P TSR RHK+AR T +D A    A    S+ +PSP Q+A  E       AA DGSA S  + E AD+RNP PVV  YENS FI Q
Sbjct:  493 MVVIPPTSRKRHKQARATASDPARLCGASVAASDASPSPEQVAGMEPEHPPLPAAEDGSAASAGVAEAADERNPSPVVAAYENSSFIVQ 581
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BLAST of mRNA_E_fasciculatus_S2_contig701.15169.1 vs.
Match: G (protein beta-subunit 13F (Fragment) n=4 Tax=Lepetodrilus aff. schrolli AL-2018 TaxID=2491721 RepID=A0A6B9ICA7_9VEST)

HSP 1 Score: 56.6 bits (135), Expect = 4.040e-7
Identity = 24/27 (88.89%), Postives = 25/27 (92.59%), Query Frame = 2 
Query:    2 IVSGSRDKTIKLWNTLGECKYTIQEDV 82
            IVSGSRDKT+KLWNTLG CKYTIQED 
Sbjct:   16 IVSGSRDKTVKLWNTLGVCKYTIQEDT 42
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BLAST of mRNA_E_fasciculatus_S2_contig701.15169.1 vs.
Match: hypothetical (protein n=1 Tax=Bacillus thuringiensis TaxID=1428 RepID=UPI001395BEDC)

HSP 1 Score: 56.6 bits (135), Expect = 5.580e-7
Identity = 25/26 (96.15%), Postives = 25/26 (96.15%), Query Frame = 2 
Query:    2 IVSGSRDKTIKLWNTLGECKYTIQED 79
            IVSGSRDKTIKLWNTLG CKYTIQED
Sbjct:    6 IVSGSRDKTIKLWNTLGVCKYTIQED 31
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BLAST of mRNA_E_fasciculatus_S2_contig701.15169.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Prasinoderma coloniale TaxID=156133 RepID=A0A7R9Y1R5_9VIRI)

HSP 1 Score: 57.0 bits (136), Expect = 8.330e-7
Identity = 25/25 (100.00%), Postives = 25/25 (100.00%), Query Frame = 2 
Query:    2 IVSGSRDKTIKLWNTLGECKYTIQE 76
            IVSGSRDKTIKLWNTLGECKYTIQE
Sbjct:   12 IVSGSRDKTIKLWNTLGECKYTIQE 36
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BLAST of mRNA_E_fasciculatus_S2_contig701.15169.1 vs.
Match: Putative (G protein beta subunit (Fragment) n=1 Tax=Parasteatoda tepidariorum TaxID=114398 RepID=A0A2L2Z1X0_PARTP)

HSP 1 Score: 55.8 bits (133), Expect = 8.590e-7
Identity = 24/26 (92.31%), Postives = 25/26 (96.15%), Query Frame = 2 
Query:    2 IVSGSRDKTIKLWNTLGECKYTIQED 79
            IVSGSRDKTIKLWNTL +CKYTIQED
Sbjct:    2 IVSGSRDKTIKLWNTLSQCKYTIQED 27
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BLAST of mRNA_E_fasciculatus_S2_contig701.15169.1 vs.
Match: Uncharacterized (protein (Fragment) n=1 Tax=Bracon brevicornis TaxID=1563983 RepID=A0A6V7LUV9_9HYME)

HSP 1 Score: 54.3 bits (129), Expect = 3.270e-6
Identity = 23/26 (88.46%), Postives = 25/26 (96.15%), Query Frame = 2 
Query:    2 IVSGSRDKTIKLWNTLGECKYTIQED 79
            IVSGSRDKTIKLWNTL ECKYTIQ++
Sbjct:   14 IVSGSRDKTIKLWNTLAECKYTIQDE 39
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BLAST of mRNA_E_fasciculatus_S2_contig701.15169.1 vs.
Match: Putative (activated protein kinase c receptor (Fragment) n=3 Tax=Culicidae TaxID=7157 RepID=A0A2M3ZYG9_9DIPT)

HSP 1 Score: 57.0 bits (136), Expect = 5.910e-6
Identity = 25/26 (96.15%), Postives = 25/26 (96.15%), Query Frame = 2 
Query:    2 IVSGSRDKTIKLWNTLGECKYTIQED 79
            IVSGSRDKTIKLWNTL ECKYTIQED
Sbjct:   16 IVSGSRDKTIKLWNTLAECKYTIQED 41
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BLAST of mRNA_E_fasciculatus_S2_contig701.15169.1 vs.
Match: Similar (to protein kinase C receptor (Fragment) n=1 Tax=Bos taurus TaxID=9913 RepID=Q862T3_BOVIN)

HSP 1 Score: 53.5 bits (127), Expect = 6.620e-6
Identity = 22/26 (84.62%), Postives = 25/26 (96.15%), Query Frame = 2 
Query:    2 IVSGSRDKTIKLWNTLGECKYTIQED 79
            IVSGSRDKTIKLWNTLG CKYT+Q++
Sbjct:   31 IVSGSRDKTIKLWNTLGVCKYTVQDE 56
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BLAST of mRNA_E_fasciculatus_S2_contig701.15169.1 vs.
Match: Guanine (nucleotide-binding protein subunit beta-like protein (Fragment) n=1 Tax=Lygus hesperus TaxID=30085 RepID=A0A146M5Y2_LYGHE)

HSP 1 Score: 54.3 bits (129), Expect = 7.510e-6
Identity = 23/26 (88.46%), Postives = 25/26 (96.15%), Query Frame = 2 
Query:    2 IVSGSRDKTIKLWNTLGECKYTIQED 79
            IVSGSRDKTIKLWNTL ECKYTIQ++
Sbjct:   41 IVSGSRDKTIKLWNTLAECKYTIQDE 66
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BLAST of mRNA_E_fasciculatus_S2_contig701.15169.1 vs.
Match: Guanine (nucleotide-binding beta subunit protein (Fragment) n=3 Tax=Pseudotsuga TaxID=3356 RepID=C6F6W4_PSEMZ)

HSP 1 Score: 53.9 bits (128), Expect = 1.000e-5
Identity = 23/27 (85.19%), Postives = 24/27 (88.89%), Query Frame = 2 
Query:    2 IVSGSRDKTIKLWNTLGECKYTIQEDV 82
            IVS SRD+TIKLWNTLGECKYTIQ D 
Sbjct:    7 IVSASRDRTIKLWNTLGECKYTIQPDA 33
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig701.15169.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
EsV-1-77.080e-1151.69n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7... [more]
G4.040e-788.89protein beta-subunit 13F (Fragment) n=4 Tax=Lepeto... [more]
hypothetical5.580e-796.15protein n=1 Tax=Bacillus thuringiensis TaxID=1428 ... [more]
Hypothetical8.330e-7100.00protein (Fragment) n=1 Tax=Prasinoderma coloniale ... [more]
Putative8.590e-792.31G protein beta subunit (Fragment) n=1 Tax=Parastea... [more]
Uncharacterized3.270e-688.46protein (Fragment) n=1 Tax=Bracon brevicornis TaxI... [more]
Putative5.910e-696.15activated protein kinase c receptor (Fragment) n=3... [more]
Similar6.620e-684.62to protein kinase C receptor (Fragment) n=1 Tax=Bo... [more]
Guanine7.510e-688.46nucleotide-binding protein subunit beta-like prote... [more]
Guanine1.000e-585.19nucleotide-binding beta subunit protein (Fragment)... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig701contigE_fasciculatus_S2_contig701:9209..10602 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score76.3
Seed ortholog evalue9e-12
Seed eggNOG ortholog2880.D7G4X8
Model size990
Hectar predicted targeting categoryother localisation
Exons2
EggNOG OGs29ZCP@1,2RXW0@2759
Cds size288
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842360.9258997-UTR-E_fasciculatus_S2_contig701:9208..97581696842360.9258997-UTR-E_fasciculatus_S2_contig701:9208..9758Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig701 9209..9758 -
1696842360.9475093-UTR-E_fasciculatus_S2_contig701:10046..101191696842360.9475093-UTR-E_fasciculatus_S2_contig701:10046..10119Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig701 10047..10119 -
1696842360.9575136-UTR-E_fasciculatus_S2_contig701:10523..106021696842360.9575136-UTR-E_fasciculatus_S2_contig701:10523..10602Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig701 10524..10602 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842360.9381979-CDS-E_fasciculatus_S2_contig701:9758..100461696842360.9381979-CDS-E_fasciculatus_S2_contig701:9758..10046Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig701 9759..10046 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig701.15169.1prot_E_fasciculatus_S2_contig701.15169.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig701 9759..10046 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig701.15169.1

>prot_E_fasciculatus_S2_contig701.15169.1 ID=prot_E_fasciculatus_S2_contig701.15169.1|Name=mRNA_E_fasciculatus_S2_contig701.15169.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=96bp
MHSLEGMVVVPRTSRSRHKRARDTETDAAPQDDAPSTVSEGAPSPVQLAD
GEQGQSRPAAAADGSAVSETLVETADQRNPLPVVTTYENSCFIDQ*
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mRNA from alignment at E_fasciculatus_S2_contig701:9209..10602-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig701.15169.1 ID=mRNA_E_fasciculatus_S2_contig701.15169.1|Name=mRNA_E_fasciculatus_S2_contig701.15169.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1394bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig701:9209..10602- (Ectocarpus fasciculatus EfasUO2)
GATCGTGTCCGGGTCCCGCGACAAGACCATCAAGCTGTGGAACACCCTCG
GGGAGTGCAAGTACACCATCCAGGAGGACGTGAGAACTGCTGCTGTGCTG
CTACTGTTGGTTGTGGTTGTTGTTGGCACTGCTGTCTTGTTTGATGAGTC
GCTTTTCAGAGTTGGCGTAAATATGCATACCTTTCGTCGGAACGACTTTT
CGAAATTTGGTTGCTGCAAGTCACGAGGCATTTCATGTCATCCAAGATAT
CTTTAGTCTCGCATGGATGGATATTTGTTTTCAAACCCTGATGTGCTGCG
GCGTATTCGGCAGTGACCATGACATGACACTTCTCATTCAGTGACCAGGG
AGTCCATTCGACTCCGCCGTGTTCAGGGGTTTGACACAAGGGTGGCGTGC
ACAAGAAATCAACATAGTAGATAATTCCGTACACAAGCAGTATAACACGC
GATTTTTGGTATGGTCTCCTTGCTCGGCAAAAGGTGTAGCCGTAAGGACT
GCTCCAAGAGGGCGAGTCACGGATTGGCAGAGAACAGGAAGAGAGAATTC
TGCGCGATGCATTCTCTGGAGGGAATGGTCGTGGTGCCACGGACATCGAG
GAGCCGGCACAAGCGAGCCCGAGACACGGAGACCGACGCCGCTCCGCAAG
ATGATGCCCCTTCGACTGTGTCGGAAGGTGCACCATCTCCAGTACAGCTA
GCGGACGGGGAGCAAGGACAATCACGACCGGCGGCGGCCGCGGATGGGTC
AGCAGTATCAGAAACACTTGTAGAGACTGCCGACCAACGGAACCCTTTGC
CAGTCGTCACCACGTACGAGAACTCTTGTTTCATCGATCAATAGGCGCTG
CCGTCTTTCTGGGGCGGTGATAGGTTGGGGAGAAACTGCATACATGGCAC
GAGCGAAAGGGCGTGAGATACACTCGTAGCATTGTATTGTGGACGGGTTT
CGGCACAGGGTTAGGATTCGGGTTTTATATTGCGGTTGTATAGATTGGGT
GGAGTAGGAGCACTGGCGTGCCCGACGATTCGCAGCTCTGTGCTGAACGT
GTGTCGATCTTCTCGCACTCTACCAACAAGTGTTTTTTCCGCATGTTTCA
GAGTTTTTGCATGGATCGCGCCAATCCTCCCGGTGTGTGGCGGTAGTAAA
GTAGGCGTGTCCTGGACTCGGCCGTGGTGGATGTAGCTGGAGTGCCTGGT
ATGCGTGTCTCGAGGCTCACAACCTCTTGGTGATGAGCTCAGTAGTGATT
ACAATACAACGTGGTCGAAAACGGCGATTTCCACCTGTCGGAGTAACCAT
CTCGAGACGTTTCGTGGCGTCTAAATAGACACTTCCAGGACAAGCCTCGC
CGCAGGCGCAACCTTCGCCTCATTTCACCAATGCCAGCCCACCC
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig701:9209..10602-

>mRNA_E_fasciculatus_S2_contig701.15169.1 ID=mRNA_E_fasciculatus_S2_contig701.15169.1|Name=mRNA_E_fasciculatus_S2_contig701.15169.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=288bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig701:9209..10602- (Ectocarpus fasciculatus EfasUO2)
ATGCATTCTCTGGAGGGAATGGTCGTGGTGCCACGGACATCGAGGAGCCG
GCACAAGCGAGCCCGAGACACGGAGACCGACGCCGCTCCGCAAGATGATG
CCCCTTCGACTGTGTCGGAAGGTGCACCATCTCCAGTACAGCTAGCGGAC
GGGGAGCAAGGACAATCACGACCGGCGGCGGCCGCGGATGGGTCAGCAGT
ATCAGAAACACTTGTAGAGACTGCCGACCAACGGAACCCTTTGCCAGTCG
TCACCACGTACGAGAACTCTTGTTTCATCGATCAATAG
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