mRNA_E_fasciculatus_S2_contig7007.15167.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7007.15167.1
Unique NamemRNA_E_fasciculatus_S2_contig7007.15167.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig7007.15167.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LBI1_ECTSI)

HSP 1 Score: 891 bits (2303), Expect = 0.000e+0
Identity = 492/533 (92.31%), Postives = 506/533 (94.93%), Query Frame = 3 
Query:   99 MLRRGIFRVAVYARSQKTCAAGVKNLPAAA-GTRAWLSASSGGDSG-GDDLTPAKTKLAFSSSVYGKDPTSGGEPSAEEAAAAAQLKREAGAGXXXXXXXXAPVHDNRNMFDSSLSQQAEDGKESGSIKRDVAADTPDATRVAFGATAYGKDPEAAAALSEQEAAEVEALRARAKADGVAGATAAPLHDRRNMFDSDLTQGAGSTQASDAIKRDVKTDTPDATRVAFRASAYGKDPQTAAALSDQEAAEVEALRMRAQGRGAAAAAPVHDSRSMFDSDLTQGAGSTQGSDSIKRDVSGDTPDATRVAFRASVYGKGGEASAALSEQEAAEVEELRVRTHGAGVAGADAAPVHDSRSMFDSDLTQGAGNMQGSDSIKRHVAANTPEATRLVFAGSDYGKDPRTVAHTEKKKAEIAALAERVGAGTHAAAAAPIHHDRSMFDSDLAEGAGAARESTAIKRHVETATPALTRLSFFGSTYGDEDPGSNKADHAQALAEKQKKGAKLARVGAGVRSAKVHNTEKAMADDEYSQAGSE 1691
            MLRRGIFRVAVYARSQKTCAAGVKNLPAAA GTRAWLSA+SGGDS   DD+TP KTKLAFSSSVYGKDP SGGEP+AEEAAAAAQLKREA AG        APVHDNRNMFDSSLSQQAEDGKESGSIKRDVAADTPDATRVAFGATAYGKDPEAAAALS QEA EVEALRARAK DGVAGA AAPLHDRRNMFDSDLTQGAGSTQA DAIKRDVKTDTPDATRVAFRASAYGKDPQTAAALS+QEAAEVEALRMRAQGRGAAAAAPVHDSRSMFDSDLTQGAGSTQGSDSIKR+VSGDTPDATRVAFRASVYGK G+A+AALSEQEAAEV+ELRVR HGAG + ADAAPVHDSRSMFDSDLTQGAG MQGSDSIKRHVAANTPEATRLVFAGSDYGKDPR+V ++EKKKAEIAALAERVGAGT AAAAAPIHHDRSMFDSDLAEGAGAARESTAIKRHVETATPALTRLSFFGSTYGD+DPGSNKADHAQALAEKQKKGAKLARVGAGV+SAKVHNTEKAMADDEYSQAGSE
Sbjct:    1 MLRRGIFRVAVYARSQKTCAAGVKNLPAAAAGTRAWLSATSGGDSSDSDDVTPPKTKLAFSSSVYGKDPASGGEPTAEEAAAAAQLKREAEAGTAREGAAAAPVHDNRNMFDSSLSQQAEDGKESGSIKRDVAADTPDATRVAFGATAYGKDPEAAAALSAQEAEEVEALRARAKGDGVAGAAAAPLHDRRNMFDSDLTQGAGSTQAFDAIKRDVKTDTPDATRVAFRASAYGKDPQTAAALSEQEAAEVEALRMRAQGRGAAAAAPVHDSRSMFDSDLTQGAGSTQGSDSIKREVSGDTPDATRVAFRASVYGKDGQAAAALSEQEAAEVDELRVRAHGAGASSADAAPVHDSRSMFDSDLTQGAGAMQGSDSIKRHVAANTPEATRLVFAGSDYGKDPRSVDNSEKKKAEIAALAERVGAGTPAAAAAPIHHDRSMFDSDLAEGAGAARESTAIKRHVETATPALTRLSFFGSTYGDDDPGSNKADHAQALAEKQKKGAKLARVGAGVQSAKVHNTEKAMADDEYSQAGSE 533
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BLAST of mRNA_E_fasciculatus_S2_contig7007.15167.1 vs.
Match: Uncharacterized (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z577_9STRA)

HSP 1 Score: 133 bits (334), Expect = 1.550e-30
Identity = 132/401 (32.92%), Postives = 197/401 (49.13%), Query Frame = 3 
Query:  234 GDDLTPAKTKLAFSSSVYGKDPTSGGEPSAEEAAAAAQLKREAGAGXXXXXXXXAPVHDNRNMFDSSLSQQAEDGKESGSIKRDVAADTPDATRVAFGATAYGKDPEAAAALSEQEAAEVEALRARAKADGVAGATAAPLHDRRNMFDSDLTQGAGSTQASDAIKRDVKTDTPDATRVAFRASAYGKD--PQTAAALSDQEAAEVEALRMRAQGRGAAAAAPVHDSRSMFDSDLTQGAGSTQGSDSIKRDVSGDTPDATRVAFRASVYGKGGEASAALSEQEAAEVEELRVRTHGAGVAGADAAPVHDSRSMFDSDLTQGAGNMQGSDSIKRHVAANTPEATRLVFAGSDYGKDPRTVAHTEKKKAEIAALAERVGAGTHAAAAAPI---HHDRSMFDSDL 1421
            G   TPA T+LAF+ S YG   ++      +  A     K+ A           + VH  R++FDS+ +QQ++D K    + ++V   TPD TR++   + YGK+    A  S+ +A     ++ R+    +A   +A +H RR +FDS +TQ A  T+A   + ++VKTDTPDATR++   S YGKD  P  A A+ +     +   R  A   G+   + +H  R+MFDS L   +   +  + I R V  DTPD TR++   S YGK      A+     A +E L     G   A    + +H  R+MFDS +TQ A + +  + + R V  +TP+ TRL    SDYG D +   H    K E  +       G   A+AAP+   H  R  FD+DL
Sbjct:   24 GPAATPAATRLAFAESAYGHGASTHDH---DVEALKKSYKKSA------TPDATSKVHSRRSLFDSAQTQQSDDSKTFIDVAKEVKTGTPDITRLSVFDSDYGKE----AMPSDAQA----RIQGRSGKRSMAERVSA-VHSRRALFDSVMTQ-ADDTKAFKDVLKEVKTDTPDATRLSVFNSDYGKDAMPANAGAMIE---GRIGGSRQSADAAGSGGVSRIHSRRAMFDSVLVH-SDDGKAFEDIVRVVKTDTPDVTRLSVFDSDYGKD-----AMPANADAMIEGLS----GKRAAAPRVSAIHSRRAMFDSVMTQ-ADDGKAFEHVVREVKTDTPDITRLSVFDSDYGADSQP--HDAHTKIEGRS-------GKREASAAPVSKVHCSRRAFDTDL 382
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7007.15167.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized0.000e+092.31protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LBI1... [more]
Uncharacterized1.550e-3032.92protein n=1 Tax=Tribonema minus TaxID=303371 RepID... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7007contigE_fasciculatus_S2_contig7007:2972..5618 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start1
Model size1694
Hectar predicted targeting categorymitochondrion
Exons3
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-27_003900.1
Cds size1596
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842360.728763-UTR-E_fasciculatus_S2_contig7007:2971..30271696842360.728763-UTR-E_fasciculatus_S2_contig7007:2971..3027Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig7007 2972..3027 +
1696842360.74663-UTR-E_fasciculatus_S2_contig7007:3620..36621696842360.74663-UTR-E_fasciculatus_S2_contig7007:3620..3662Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig7007 3621..3662 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842360.7556317-CDS-E_fasciculatus_S2_contig7007:3662..50851696842360.7556317-CDS-E_fasciculatus_S2_contig7007:3662..5085Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7007 3663..5085 +
1696842360.7646399-CDS-E_fasciculatus_S2_contig7007:5445..56181696842360.7646399-CDS-E_fasciculatus_S2_contig7007:5445..5618Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7007 5446..5618 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7007.15167.1prot_E_fasciculatus_S2_contig7007.15167.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7007 3663..5618 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7007.15167.1

>prot_E_fasciculatus_S2_contig7007.15167.1 ID=prot_E_fasciculatus_S2_contig7007.15167.1|Name=mRNA_E_fasciculatus_S2_contig7007.15167.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=532bp
MLRRGIFRVAVYARSQKTCAAGVKNLPAAAGTRAWLSASSGGDSGGDDLT
PAKTKLAFSSSVYGKDPTSGGEPSAEEAAAAAQLKREAGAGTAGAGAAAA
PVHDNRNMFDSSLSQQAEDGKESGSIKRDVAADTPDATRVAFGATAYGKD
PEAAAALSEQEAAEVEALRARAKADGVAGATAAPLHDRRNMFDSDLTQGA
GSTQASDAIKRDVKTDTPDATRVAFRASAYGKDPQTAAALSDQEAAEVEA
LRMRAQGRGAAAAAPVHDSRSMFDSDLTQGAGSTQGSDSIKRDVSGDTPD
ATRVAFRASVYGKGGEASAALSEQEAAEVEELRVRTHGAGVAGADAAPVH
DSRSMFDSDLTQGAGNMQGSDSIKRHVAANTPEATRLVFAGSDYGKDPRT
VAHTEKKKAEIAALAERVGAGTHAAAAAPIHHDRSMFDSDLAEGAGAARE
STAIKRHVETATPALTRLSFFGSTYGDEDPGSNKADHAQALAEKQKKGAK
LARVGAGVRSAKVHNTEKAMADDEYSQAGSE*
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mRNA from alignment at E_fasciculatus_S2_contig7007:2972..5618+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7007.15167.1 ID=mRNA_E_fasciculatus_S2_contig7007.15167.1|Name=mRNA_E_fasciculatus_S2_contig7007.15167.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=2647bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7007:2972..5618+ (Ectocarpus fasciculatus EfasUO2)
GCTGCACACCGAGAGAGGCAGGGCGTGCGTAGTCAAACAGCTTCTACACG
TGAGAGGTGAGGGGTGTGGTCGATGAGAGATGAGTATTTCACGTGTCAAT
ATGGAACCGAGCTCCACTTGCTCGCCCGGGACTTTTGTGCAAATTGCGGC
TTGAAGGTCGAGGAAGGAAGTTGCCCTCGATGCAAACACCGCAAGGTATC
GTATCATAAGATCATAGGGAGGCGCCCGAGATGTCCGAGCCGAGCGGGTT
AGGAGGCCATCTGATACGCTTAGTACGTAGATAATCCGAGGGTTAGTGTC
CTTTCTAGCTGCGCAACGCACCGGGTATCTCTTTCTCCGTATCGTGACAT
GAGTAACAAGACCGTCGGCGGCGCGGGACTCTCTCGAAGTACGTACAAGT
ACCCAGCAGTTCGGCTCGTTTGCTCGGCAGTACTGCCCTACTGCGGCTGT
GTGTGCCGTGACGCCGTGACACATCTGATGCACAATTACTGCTGTGTTCC
ATTTACTACCACGAATGCATACGTTGCGTTGTGTACTTGAACAACAACAA
GCACTTCATGCACCTACCTATGTACCTTCGACGCTGCCTGCTCTCCTCTC
GCCGGGCCTCTGCATCTGTCTGGTCCGCGGATTGGCGTGCCTCCTAAAGA
GAAGGAAAGCTGTATTCTAGATCTGTGCGCGCGGGACAACCATGCTGCGG
AGAGGAATTTTCAGGGTGGCTGTTTACGCCCGGTCCCAGAAAACATGCGC
CGCCGGGGTAAAAAATTTGCCCGCGGCTGCGGGGACGAGGGCTTGGCTCT
CCGCCTCGTCAGGTGGAGACAGCGGCGGTGACGACCTAACCCCGGCCAAG
ACGAAACTCGCGTTTTCCTCCAGCGTGTACGGGAAGGACCCGACTTCTGG
CGGGGAACCATCCGCGGAGGAGGCGGCCGCGGCGGCGCAACTCAAGCGGG
AGGCGGGGGCGGGCACGGCAGGGGCGGGGGCAGCGGCCGCACCCGTTCAC
GACAACAGAAACATGTTCGACTCTTCGCTGTCCCAGCAGGCCGAGGATGG
GAAAGAGTCCGGGAGCATCAAGCGCGACGTTGCGGCCGACACTCCGGACG
CCACACGAGTGGCATTCGGCGCTACTGCCTACGGGAAAGACCCCGAGGCC
GCCGCTGCGCTTTCGGAGCAGGAGGCTGCCGAGGTTGAAGCGTTGCGGGC
GAGGGCAAAGGCCGATGGTGTCGCCGGTGCGACAGCGGCCCCGCTTCACG
ACAGACGCAACATGTTCGATTCCGACTTGACGCAGGGCGCGGGGAGCACG
CAAGCGTCAGATGCCATCAAGCGCGACGTTAAAACGGATACGCCGGATGC
CACACGAGTAGCCTTCCGCGCAAGTGCTTACGGGAAAGACCCTCAAACGG
CCGCTGCGCTCTCTGATCAGGAGGCGGCCGAGGTGGAAGCGCTGCGGATG
AGGGCGCAGGGCCGGGGTGCTGCAGCCGCGGCCCCGGTCCACGATTCCAG
GAGCATGTTTGACTCCGACCTCACGCAAGGCGCCGGGAGCACGCAAGGGT
CTGACTCGATCAAGCGTGACGTTTCCGGCGATACCCCGGACGCCACAAGA
GTAGCGTTCCGCGCGAGCGTTTACGGAAAGGGCGGCGAGGCGTCCGCTGC
GCTTTCGGAGCAGGAGGCCGCCGAGGTGGAAGAGTTACGGGTGAGGACAC
ACGGTGCCGGTGTCGCCGGCGCTGATGCCGCACCTGTGCATGATTCTAGG
AGCATGTTTGACTCCGATCTCACGCAGGGCGCTGGGAACATGCAGGGTTC
GGACTCGATCAAGCGCCACGTTGCGGCCAACACGCCGGAAGCGACGCGGT
TGGTCTTTGCAGGGTCCGACTACGGCAAGGACCCGCGCACCGTGGCCCAC
ACGGAGAAGAAGAAGGCGGAGATCGCAGCGCTCGCGGAGAGAGTGGGGGC
GGGCACCCACGCCGCTGCGGCGGCGCCCATCCACCACGATAGATCGATGT
TCGACTCGGACCTTGCGGAAGGCGCAGGTGCAGCACGGGAGTCGACGGCG
ATCAAGCGCCACGTTGAGACGGCGACTCCGGCGTTGACTCGTCTCAGTTT
CTTCGGCAGTACCTGTGAGTGAAGACCTTTTTTTCCCCCGTCTATCTTTG
TGTCTGAGTGATGTATGCGCGATGATTCATCGCCAACTAAGTGTGGCAGC
ACGCGGGGTCTCTGGTTTCACATTTGCAGTTGGTGCGCTGGCGCACTCAA
ACCGCCCCATCTGTTCGAACTGCCTCAGGCACAGCAGTTGTTCTTCTGCC
TAAGTCTCCTGCTTGCATTGTCCCGTAGTCGCTCTGCTGCCTCGCGGGGC
TACCCGAGGTTTTTGCACCTACCCAGACAATATTTGAACCCCACCCCGAC
ATGCCTGTATTACCACCCAACTCCCAAGGACCTTTATTGATGCGATGGGT
GATATCTTTGTGACCAAACCTCAGATGGCGATGAGGATCCTGGCTCCAAC
AAAGCGGATCACGCTCAAGCATTGGCGGAGAAGCAAAAGAAGGGGGCCAA
GCTGGCGAGGGTAGGAGCAGGTGTCCGCAGCGCGAAGGTCCACAACACGG
AGAAGGCCATGGCCGACGACGAGTATTCCCAAGCAGGATCGGAGTGA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7007:2972..5618+

>mRNA_E_fasciculatus_S2_contig7007.15167.1 ID=mRNA_E_fasciculatus_S2_contig7007.15167.1|Name=mRNA_E_fasciculatus_S2_contig7007.15167.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=1596bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7007:2972..5618+ (Ectocarpus fasciculatus EfasUO2)
ATGCTGCGGAGAGGAATTTTCAGGGTGGCTGTTTACGCCCGGTCCCAGAA
AACATGCGCCGCCGGGGTAAAAAATTTGCCCGCGGCTGCGGGGACGAGGG
CTTGGCTCTCCGCCTCGTCAGGTGGAGACAGCGGCGGTGACGACCTAACC
CCGGCCAAGACGAAACTCGCGTTTTCCTCCAGCGTGTACGGGAAGGACCC
GACTTCTGGCGGGGAACCATCCGCGGAGGAGGCGGCCGCGGCGGCGCAAC
TCAAGCGGGAGGCGGGGGCGGGCACGGCAGGGGCGGGGGCAGCGGCCGCA
CCCGTTCACGACAACAGAAACATGTTCGACTCTTCGCTGTCCCAGCAGGC
CGAGGATGGGAAAGAGTCCGGGAGCATCAAGCGCGACGTTGCGGCCGACA
CTCCGGACGCCACACGAGTGGCATTCGGCGCTACTGCCTACGGGAAAGAC
CCCGAGGCCGCCGCTGCGCTTTCGGAGCAGGAGGCTGCCGAGGTTGAAGC
GTTGCGGGCGAGGGCAAAGGCCGATGGTGTCGCCGGTGCGACAGCGGCCC
CGCTTCACGACAGACGCAACATGTTCGATTCCGACTTGACGCAGGGCGCG
GGGAGCACGCAAGCGTCAGATGCCATCAAGCGCGACGTTAAAACGGATAC
GCCGGATGCCACACGAGTAGCCTTCCGCGCAAGTGCTTACGGGAAAGACC
CTCAAACGGCCGCTGCGCTCTCTGATCAGGAGGCGGCCGAGGTGGAAGCG
CTGCGGATGAGGGCGCAGGGCCGGGGTGCTGCAGCCGCGGCCCCGGTCCA
CGATTCCAGGAGCATGTTTGACTCCGACCTCACGCAAGGCGCCGGGAGCA
CGCAAGGGTCTGACTCGATCAAGCGTGACGTTTCCGGCGATACCCCGGAC
GCCACAAGAGTAGCGTTCCGCGCGAGCGTTTACGGAAAGGGCGGCGAGGC
GTCCGCTGCGCTTTCGGAGCAGGAGGCCGCCGAGGTGGAAGAGTTACGGG
TGAGGACACACGGTGCCGGTGTCGCCGGCGCTGATGCCGCACCTGTGCAT
GATTCTAGGAGCATGTTTGACTCCGATCTCACGCAGGGCGCTGGGAACAT
GCAGGGTTCGGACTCGATCAAGCGCCACGTTGCGGCCAACACGCCGGAAG
CGACGCGGTTGGTCTTTGCAGGGTCCGACTACGGCAAGGACCCGCGCACC
GTGGCCCACACGGAGAAGAAGAAGGCGGAGATCGCAGCGCTCGCGGAGAG
AGTGGGGGCGGGCACCCACGCCGCTGCGGCGGCGCCCATCCACCACGATA
GATCGATGTTCGACTCGGACCTTGCGGAAGGCGCAGGTGCAGCACGGGAG
TCGACGGCGATCAAGCGCCACGTTGAGACGGCGACTCCGGCGTTGACTCG
TCTCAGTTTCTTCGGCAGTACCTATGGCGATGAGGATCCTGGCTCCAACA
AAGCGGATCACGCTCAAGCATTGGCGGAGAAGCAAAAGAAGGGGGCCAAG
CTGGCGAGGGTAGGAGCAGGTGTCCGCAGCGCGAAGGTCCACAACACGGA
GAAGGCCATGGCCGACGACGAGTATTCCCAAGCAGGATCGGAGTGA
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