mRNA_E_fasciculatus_S2_contig7003.15159.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7003.15159.1
Unique NamemRNA_E_fasciculatus_S2_contig7003.15159.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7003.15159.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7003contigE_fasciculatus_S2_contig7003:3594..3901 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop0
Start1
Model size288
Hectar predicted targeting categorysignal peptide
Exons2
Cds size198
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842360.2434878-UTR-E_fasciculatus_S2_contig7003:3593..36821696842360.2434878-UTR-E_fasciculatus_S2_contig7003:3593..3682Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig7003 3594..3682 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842360.2553124-CDS-E_fasciculatus_S2_contig7003:3682..38191696842360.2553124-CDS-E_fasciculatus_S2_contig7003:3682..3819Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7003 3683..3819 +
1696842360.2671294-CDS-E_fasciculatus_S2_contig7003:3840..39011696842360.2671294-CDS-E_fasciculatus_S2_contig7003:3840..3901Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7003 3841..3901 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7003.15159.1prot_E_fasciculatus_S2_contig7003.15159.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7003 3683..3901 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7003.15159.1

>prot_E_fasciculatus_S2_contig7003.15159.1 ID=prot_E_fasciculatus_S2_contig7003.15159.1|Name=mRNA_E_fasciculatus_S2_contig7003.15159.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=66bp
MVRLMCGPVARVVFLIRLLNRSLPVFLFALSRDVMAFFAGVAVELLPRGP
ACHEVAICCLAFYRTC
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mRNA from alignment at E_fasciculatus_S2_contig7003:3594..3901+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7003.15159.1 ID=mRNA_E_fasciculatus_S2_contig7003.15159.1|Name=mRNA_E_fasciculatus_S2_contig7003.15159.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=308bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7003:3594..3901+ (Ectocarpus fasciculatus EfasUO2)
CTTTCAGTGCTGTTTTTCTCTCCATTTGTTCCCTCTTCTTGATTCCTCGC
TCCTTTGTTTTCTGATGGGCAGACTTGACTCAGAGGATCATGGTTCGCTT
GATGTGCGGACCTGTTGCGCGGGTTGTATTCTTGATTCGTTTGTTGAACC
GCTCGCTTCCTGTGTTTCTTTTTGCTCTCTCTCGTGATGTGATGGCATTT
TTCGCTGGCGTAGCGGTGGAGCTATTGTACTGCGTCGTCGACTTGAGGCC
ACGAGGGCCCGCCTGCCATGAAGTGGCGATATGCTGTCTGGCTTTCTACA
GGACCTGC
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7003:3594..3901+

>mRNA_E_fasciculatus_S2_contig7003.15159.1 ID=mRNA_E_fasciculatus_S2_contig7003.15159.1|Name=mRNA_E_fasciculatus_S2_contig7003.15159.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=198bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7003:3594..3901+ (Ectocarpus fasciculatus EfasUO2)
ATGGTTCGCTTGATGTGCGGACCTGTTGCGCGGGTTGTATTCTTGATTCG
TTTGTTGAACCGCTCGCTTCCTGTGTTTCTTTTTGCTCTCTCTCGTGATG
TGATGGCATTTTTCGCTGGCGTAGCGGTGGAGCTATTGCCACGAGGGCCC
GCCTGCCATGAAGTGGCGATATGCTGTCTGGCTTTCTACAGGACCTGC
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