mRNA_E_fasciculatus_S2_contig6985.15123.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig6985.15123.1
Unique NamemRNA_E_fasciculatus_S2_contig6985.15123.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig6985.15123.1 vs.
Match: Ubiquitin (carboxyl-terminal hydrolase n=1 Tax=Choiromyces venosus 120613-1 TaxID=1336337 RepID=A0A3N4J4Q0_9PEZI)

HSP 1 Score: 50.4 bits (119), Expect = 4.750e-5
Identity = 29/77 (37.66%), Postives = 41/77 (53.25%), Query Frame = 1 
Query:   19 VRRAAADGTKLDTPLKFGLTGTPLQDE------VYDVKGIIVHDGERSDSGHYSAYVPAEGDGTGWLHVNDSRVTEV 231
            ++ A A+    +  LK  L     QDE      +Y++ G+I H G  +DSGHY +YV  EGD   W   ND +V+EV
Sbjct:  445 LKEAEANLPDWEQELKDKLDPGLAQDEGCNPSGLYELMGVITHQGASADSGHYCSYVKKEGDDDLWWFFNDDKVSEV 521
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BLAST of mRNA_E_fasciculatus_S2_contig6985.15123.1 vs.
Match: Ubiquitin (carboxyl-terminal hydrolase n=2 Tax=Tuber TaxID=36048 RepID=A0A2T6ZM96_TUBBO)

HSP 1 Score: 50.1 bits (118), Expect = 6.480e-5
Identity = 21/44 (47.73%), Postives = 29/44 (65.91%), Query Frame = 1 
Query:  100 VYDVKGIIVHDGERSDSGHYSAYVPAEGDGTGWLHVNDSRVTEV 231
            +Y++ G+I H G  +DSGHY +YV  EGD   W   ND +V+EV
Sbjct:  471 LYELTGVITHQGASADSGHYCSYVKKEGDDDLWWFFNDDKVSEV 514
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BLAST of mRNA_E_fasciculatus_S2_contig6985.15123.1 vs.
Match: Ubiquitin (carboxyl-terminal hydrolase n=3 Tax=Aspergillus TaxID=5052 RepID=A0A7R8AGQ2_9EURO)

HSP 1 Score: 50.1 bits (118), Expect = 6.500e-5
Identity = 22/49 (44.90%), Postives = 32/49 (65.31%), Query Frame = 1 
Query:  100 VYDVKGIIVHDGERSDSGHYSAYVPAEGDGTG-----WLHVNDSRVTEV 231
            +Y+++G+I H G  +DSGHY++YV  + DG G     W   ND +VTEV
Sbjct:  490 LYELRGVITHQGASADSGHYTSYVKKQSDGKGDSDDKWWWFNDDKVTEV 538
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BLAST of mRNA_E_fasciculatus_S2_contig6985.15123.1 vs.
Match: Ubiquitin (carboxyl-terminal hydrolase n=1 Tax=Eutypa lata (strain UCR-EL1) TaxID=1287681 RepID=M7SUG2_EUTLA)

HSP 1 Score: 50.1 bits (118), Expect = 6.510e-5
Identity = 25/65 (38.46%), Postives = 36/65 (55.38%), Query Frame = 1 
Query:   91 QDEVYDVKGIIVHDGERSDSGHYSAYV----------------PAEGDGTGWLHVNDSRVTEVGA 237
            Q  +Y+++G++ H G  +DSGHY+AYV                PAEG+G  W   ND +V+EV A
Sbjct:  479 QSGLYELRGVVTHQGASADSGHYTAYVKKAAPVDAKTGKRKEEPAEGEGDKWWWFNDDKVSEVTA 543
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig6985.15123.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
Ubiquitin4.750e-537.66carboxyl-terminal hydrolase n=1 Tax=Choiromyces ve... [more]
Ubiquitin6.480e-547.73carboxyl-terminal hydrolase n=2 Tax=Tuber TaxID=36... [more]
Ubiquitin6.500e-544.90carboxyl-terminal hydrolase n=3 Tax=Aspergillus Ta... [more]
Ubiquitin6.510e-538.46carboxyl-terminal hydrolase n=1 Tax=Eutypa lata (s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig6985contigE_fasciculatus_S2_contig6985:4938..5749 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop0
Start0
Model size292
Hectar predicted targeting categoryother localisation
Exons3
Cds size291
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842355.965528-CDS-E_fasciculatus_S2_contig6985:4938..50011696842355.965528-CDS-E_fasciculatus_S2_contig6985:4938..5001Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig6985 4939..5001 -
1696842355.9764407-CDS-E_fasciculatus_S2_contig6985:5330..54421696842355.9764407-CDS-E_fasciculatus_S2_contig6985:5330..5442Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig6985 5331..5442 -
1696842355.9873059-CDS-E_fasciculatus_S2_contig6985:5633..57491696842355.9873059-CDS-E_fasciculatus_S2_contig6985:5633..5749Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig6985 5634..5749 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig6985.15123.1prot_E_fasciculatus_S2_contig6985.15123.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig6985 4939..5749 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig6985.15123.1

>prot_E_fasciculatus_S2_contig6985.15123.1 ID=prot_E_fasciculatus_S2_contig6985.15123.1|Name=mRNA_E_fasciculatus_S2_contig6985.15123.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=97bp
ETLVVFVRRAAADGTKLDTPLKFGLTGTPLQDEVYDVKGIIVHDGERSDS
GHYSAYVPAEGDGTGWLHVNDSRVTEVGAGVVTDQNPAMFVMERQGR
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mRNA from alignment at E_fasciculatus_S2_contig6985:4938..5749-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig6985.15123.1 ID=mRNA_E_fasciculatus_S2_contig6985.15123.1|Name=mRNA_E_fasciculatus_S2_contig6985.15123.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=812bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig6985:4938..5749- (Ectocarpus fasciculatus EfasUO2)
GAAACGCTCGTGGTGTTCGTTAGACGGGCGGCGGCGGACGGGACGAAACT
TGACACGCCGTTGAAGTTTGGGCTGACGGGAACCCCTCTCCAAGACGAAG
TGTACGACGTGAAGGGGTGAGTGCGGGCGCGCTCTCAAGTGGGCACAGGT
CCAGAAATACAAAAGGGGGAGACGGGTTCGTTCGTCCAACTGGTGTACCC
CTATACATGTCGGTGTCGATCGAGATGTAGTCCCCACAGAACTATGCTTG
ACCCTGGCGATTGCTTCTGGGGCTCACGGTACCTCTTGTGTTTTAACCCC
GGACCAGGATCATTGTCCACGACGGCGAACGGTCCGACAGCGGGCACTAC
TCGGCGTACGTGCCTGCGGAAGGAGACGGCACCGGCTGGCTTCACGTCAA
CGACTCTAGGGTGACGGAGGTGGGCACGAAAAGAGAAACGCCCGATTTCT
TTCCCCTCTGACTTGGACAAGGGGGGTTGTTCACACACACTTTTTGTTGT
GTGGTCTTTTGCCCCACGCCCCCAACACCTGCCAGCACATGATCCTGTCT
ATCTTCCTTTTCTTTCTCGTGTTTTCTCTTTCGGACAAGCGTTGATGCTC
CACAAGCCCGCCTTGAAATTCCTGGCCGTTCTTCATTAGTGTATGTAGAT
AAGAGAGCGTCAGTCACACACGAACACGGCAGTGTCTGCTCGTATCCCAA
CACGGGGTTACCGCGCACCCACGCCATCTTCGCTCAACGCCGGGACAGGT
CGGTGCGGGCGTGGTAACGGATCAGAATCCAGCCATGTTCGTCATGGAAC
GACAGGGGAGGG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig6985:4938..5749-

>mRNA_E_fasciculatus_S2_contig6985.15123.1 ID=mRNA_E_fasciculatus_S2_contig6985.15123.1|Name=mRNA_E_fasciculatus_S2_contig6985.15123.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=291bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig6985:4938..5749- (Ectocarpus fasciculatus EfasUO2)
GAAACGCTCGTGGTGTTCGTTAGACGGGCGGCGGCGGACGGGACGAAACT
TGACACGCCGTTGAAGTTTGGGCTGACGGGAACCCCTCTCCAAGACGAAG
TGTACGACGTGAAGGGGATCATTGTCCACGACGGCGAACGGTCCGACAGC
GGGCACTACTCGGCGTACGTGCCTGCGGAAGGAGACGGCACCGGCTGGCT
TCACGTCAACGACTCTAGGGTGACGGAGGTCGGTGCGGGCGTGGTAACGG
ATCAGAATCCAGCCATGTTCGTCATGGAACGACAGGGGAGG
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