prot_E_fasciculatus_S2_contig6963.15103.1 (polypeptide) Ectocarpus fasciculatus EfasUO2

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_E_fasciculatus_S2_contig6963.15103.1
Unique Name	prot_E_fasciculatus_S2_contig6963.15103.1
Type	polypeptide
Organism	Ectocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Sequence length	236

Homology

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BLAST of mRNA_E_fasciculatus_S2_contig6963.15103.1 vs. uniprot
Match: D8LBU6_ECTSI (Similarity to cobalamin synthesis protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LBU6_ECTSI)

HSP 1 Score: 284 bits (726), Expect = 1.610e-89
Identity = 203/235 (86.38%), Postives = 204/235 (86.81%), Query Frame = 0

Query:    1 MDKHFADILADKKNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPPGRAHRHAHDRLGAQSVGVEVAEGPIDWAKFTSWLKSFLEKEGEELIWRLKGVLWTTATTGSGAATTWGWGAGRRTVVQGLYGHFESEGSDWPAGATRVSRMVFIGDLSPRVQEALRAGVRSCIAARRARPXXXXXXXXXXXXXXXXXXXXXXXXXFASRLGTVKFGGGGNDLFL 235
            MDKHFADILADKK         XXXXXXXXXXXXXXXXXXXXXXXXXXX           PGR HRHAHDRLGAQSVGVEVAEGPIDW KFTSWLK FLEKEGEELIWRLKGVLWTTA  GSGAATTWGWGAGRRTVVQGLYGHFESE SDWPAGATRVSRMVFIGDLSPRVQEALRAGVRSC+A RRARP XXXXXXXXXXXXXXXXXXXXXX  FASRLG VKFGGGGNDLFL
Sbjct:  353 MDKHFADILADKKKNSDKHDGHXXXXXXXXXXXXXXXXXXXXXXXXXXXSS---------PGRDHRHAHDRLGAQSVGVEVAEGPIDWTKFTSWLKGFLEKEGEELIWRLKGVLWTTAANGSGAATTWGWGAGRRTVVQGLYGHFESEVSDWPAGATRVSRMVFIGDLSPRVQEALRAGVRSCVAVRRARPPXXXXXXXXXXXXXXXXXXXXXX--FASRLGAVKFGGGGNDLFL 576

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BLAST of mRNA_E_fasciculatus_S2_contig6963.15103.1 vs. uniprot
Match: A0A4P6L617_9BURK (GTP-binding protein n=2 Tax=Massilia lutea TaxID=321985 RepID=A0A4P6L617_9BURK)

HSP 1 Score: 60.1 bits (144), Expect = 6.200e-7
Identity = 43/123 (34.96%), Postives = 65/123 (52.85%), Query Frame = 0

Query:   64 AHRHAHDRLGAQSVGVEVAEGPIDWAKFTSWLKSFLEKEGEELIWRLKGVLWTTATTGSGAATTWGWGAGRRTVVQGLYGHFESEGSD-WPAGATRVSRMVFIGDLSPRVQEALRAGVRSCIA 185
            AH H+HD    +SV +  A  P D     +WL   L+ +G++L  RLKG+L                G GRR V+Q ++   +   +D WPAG +RVS++VFIG    R  + L++G+  C+A
Sbjct:  280 AHGHSHDPS-VESVSLTFA-APFDRRLLDAWLAQLLQAQGDDLF-RLKGILAIA-------------GDGRRHVLQAVHRVLDLRPADTWPAGGSRVSKLVFIGRNLDR--DTLKSGLDWCLA 384

The following BLAST results are available for this feature:

BLAST of mRNA_E_fasciculatus_S2_contig6963.15103.1 vs. uniprot

BLAST of mRNA_E_fasciculatus_S2_contig6963.15103.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
D8LBU6_ECTSI	1.610e-89	86.38	Similarity to cobalamin synthesis protein n=2 Tax=...	[more]
A0A4P6L617_9BURK	6.200e-7	34.96	GTP-binding protein n=2 Tax=Massilia lutea TaxID=3...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0 of Ectocarpus fasciculatus EfasUO2
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036627	CobW-like, C-terminal domain superfamily	GENE3D	3.30.1220.10		coord: 54..183 e-value: 8.6E-11 score: 43.4
IPR011629	Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal	PFAM	PF07683	CobW_C	coord: 82..183 e-value: 8.8E-10 score: 38.4
None	No IPR available	PANTHER	PTHR13748	COBW-RELATED	coord: 63..186
None	No IPR available	PANTHER	PTHR13748:SF44		coord: 63..186
None	No IPR available	SUPERFAMILY	90002	Hypothetical protein YjiA, C-terminal domain	coord: 82..183

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
E_fasciculatus_S2_contig6963	contig	E_fasciculatus_S2_contig6963:6700..7961 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0 of Ectocarpus fasciculatus EfasUO2	2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90	2022-09-16
OGS1.0 of Ectocarpus fasciculatus EfasUO2	2022-07-07

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_E_fasciculatus_S2_contig6963.15103.1	mRNA_E_fasciculatus_S2_contig6963.15103.1	Ectocarpus fasciculatus EfasUO2	mRNA	E_fasciculatus_S2_contig6963 6700..7964 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_E_fasciculatus_S2_contig6963.15103.1 ID=prot_E_fasciculatus_S2_contig6963.15103.1|Name=mRNA_E_fasciculatus_S2_contig6963.15103.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=236bp
MDKHFADILADKKNNSDNHGDDDDHHDHHHGHGEAKANTPPHGGGEKSTA
AAAAAAVAAPPGRAHRHAHDRLGAQSVGVEVAEGPIDWAKFTSWLKSFLE
KEGEELIWRLKGVLWTTATTGSGAATTWGWGAGRRTVVQGLYGHFESEGS
DWPAGATRVSRMVFIGDLSPRVQEALRAGVRSCIAARRARPPPPKPRAIA
GRDGGSGGGGGGGGGGFASRLGTVKFGGGGNDLFL*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR011629	Cbl_biosynth_CobW-like_C
IPR036627	CobW-likC_sf