mRNA_E_fasciculatus_S2_contig6940.15076.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig6940.15076.1
Unique NamemRNA_E_fasciculatus_S2_contig6940.15076.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
BLAST of mRNA_E_fasciculatus_S2_contig6940.15076.1 vs.
Match: Cnd1 (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP86_ECTSI)

HSP 1 Score: 863 bits (2229), Expect = 1.190e-290
Identity = 499/652 (76.53%), Postives = 509/652 (78.07%), Query Frame = 3
Query:  567 GGGAPGVEGGXXX-KKAPQXXXRGKDAEGGEDGDSSXXXXXXXXXXXXXXXXXXXXXXSGGEVVACLELLKACLACVPLESHQDLVVKLSEVLVGVSVVAAIEGPASLAHLASASMVGLVTGASGHTEVVQGVVLQALMPVILMTTGKADVPPRSRDCVKAHNSAVDTAKAIAAALRNAAPKNGYKTRGVTPSTPGRSTDVPSGGSLASQSPSAATPAGGGDGTSASPTGDDSIASPDGQPVVMVGKKGDGNGXXXXXXXXXXKPVLTLLQHLCVSSPERAEGRARLAEGLAALLPELEEPDRVRFVVFLAKLSRSAKIVHRGFSVELSSRLLTEDWPWAADNSXXXXXXXXXXXXXEGSAVSTPRANGDADGPSPCLTDGGGRTMLDLVVARAADTAPTVRSKAASTLSEVLSGIQGRRSGYKGGAFRQAVMEACGWGEAGMERRHDGPLLETIRTRVEDEKANVRRNAVPALEAILKLSPAFSGGGASADGGEAAIGKEHEADFELLQERCNDMSLSTRKAAMGALSSLLMLRPSDESLQNAWVSSVLPLAGDPEQTCQNRLVEIIRTVLIDRVVEWHKTEAGTGKNKGRGSSTSSRPTRGVSNSVSDDGGAGEGPAGGAAGETNAGGVSSVWPLLAKAGQGGAHKCLKK 2519
            GGGAPGVEGG    KK PQ   RGKDAE GE     XX                    SGGEV+ACLELLK+CLACVPLESHQ+LVVKLSEVLVGVSVVAAIEGPASLA LASASMVGLVTGASGHTEVVQGVVLQALMPVILMTTGKADVPPRSRDCVKAHNSA+DTAKAIAAALRNAA KNGYKTRG TPSTPG+STDV S G LASQSPSA TPAGGGD TSASPT           PVV+VGKKGDG+G          KPVLTLLQHLCVSSPERAEGRARLAEGLAALLPELEEPDRVRFVVFLAKLSRSAKIVHRGFSVELSSRLLTEDWPWA D+S             EG+AVSTPRANGDADGPSPCLTDGGGRTMLDLVVARAADTAPTVRSKAASTLSEVLSGIQGRRSGYKGGAF+QAVMEACGWGEAGMERRHDGPLLETIRTRVEDEKANVRRNAVPALEAILKLSPAFSGG ASADGGEAAIGKEHEADFELLQERCNDMSLSTRKAAMGALSSLLMLRPSDESLQ AWVSSVLPLAGDPEQTCQ                                                                TNAGGVSSVWPLLAKAGQGGAHKCLKK
Sbjct:  189 GGGAPGVEGGGVGRKKGPQKRRRGKDAEEGEXXXXXXXGDEAGPRGVGRCAAGGGGRWSGGEVLACLELLKSCLACVPLESHQELVVKLSEVLVGVSVVAAIEGPASLADLASASMVGLVTGASGHTEVVQGVVLQALMPVILMTTGKADVPPRSRDCVKAHNSAIDTAKAIAAALRNAATKNGYKTRGGTPSTPGQSTDVLSEGGLASQSPSATTPAGGGDDTSASPTXXXXXXXXXXGPVVVVGKKGDGDGQTGTGGDGG-KPVLTLLQHLCVSSPERAEGRARLAEGLAALLPELEEPDRVRFVVFLAKLSRSAKIVHRGFSVELSSRLLTEDWPWATDDSSSADGSG------EGAAVSTPRANGDADGPSPCLTDGGGRTMLDLVVARAADTAPTVRSKAASTLSEVLSGIQGRRSGYKGGAFQQAVMEACGWGEAGMERRHDGPLLETIRTRVEDEKANVRRNAVPALEAILKLSPAFSGGRASADGGEAAIGKEHEADFELLQERCNDMSLSTRKAAMGALSSLLMLRPSDESLQKAWVSSVLPLAGDPEQTCQ----------------------------------------------------------------TNAGGVSSVWPLLAKAGQGGAHKCLKK 769          
BLAST of mRNA_E_fasciculatus_S2_contig6940.15076.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQJ4_9PHAE)

HSP 1 Score: 761 bits (1966), Expect = 7.580e-267
Identity = 454/561 (80.93%), Postives = 464/561 (82.71%), Query Frame = 3
Query:  567 GGGAPGVEGGXXXKKAPQXXX-RGKDAEGGEDGDSSXXXXXXXXXXXXXXXXXXXXXXSGGEVVACLELLKACLACVPLESHQDLVVKLSEVLVGVSVVAAIEGPASLAHLASASMVGLVTGASGHTEVVQGVVLQALMPVILMTTGKADVPPRSRDCVKAHNSAVDTAKAIAAALRNAAPKNGYKTRGVTPSTPGRSTDVPSGGSLASQSPSAATPAGGGDGTSASPTGDDSIASPDGQPVVMVGKKGDGNGXXXXXXXXXXKPVLTLLQHLCVSSPERAEGRARLAEGLAALLPELEEPDRVRFVVFLAKLSRSAKIVHRGFSVELSSRLLTEDWPWAADNSXXXXXXXXXXXXXEGSAVSTPRANGDADGPSPCLTDGGGRTMLDLVVARAADTAPTVRSKAASTLSEVLSGIQGRRSGYKGGAFRQAVMEACGWGEAGMERRHDGPLLETIRTRVEDEKANVRRNAVPALEAILKLSPAFSGGGASADGGEAAIGKEHEADFELLQERCNDMSLSTRKAAMGALSSLLMLRPSDESLQNAWVSSVLPLAGDPEQTCQ 2246
            GGGAPGV   XXX     XXX RGKDAEGGED DSS                      SGGEV+ACLELLK+CLACV LESHQDLVVKLSEVLVGVSVVAAIEGPASLA LASASMVGLVTGASGHTEVVQGVVLQALMPVILM TGKADVPPRSRDCVKAHNSAVDTAKAIAAALRNAA KNGY+TRG TPSTPG+STDVPS G LASQSPSA TPAGGG  TS+SP          G PVV+VGKKGDG  XXXXXXXXX KPVLTLLQHLCVSSPERAEGRARLAEGLA LLPELEE DR RFVVFLAK              ELSSRLLTEDWPWA D++             EG AVST RANG  DGPSPCLTDGGGRTMLDLVVARAADTAPTVRSKAASTLSEVLSGIQGRRSGYKG AFRQAVMEACGWGEAGMER HDGPLLETIRTRVEDEKANVRRNAVPALEAILKLSPAFS G ASAD GEAAIGKEHEADFELLQERCND+SLSTRKAAMGALSSLLMLRPSDE+LQ AWVSSVLPLAGDPEQTCQ
Sbjct:   67 GGGAPGVXXXXXXXXXXXXXXXRGKDAEGGEDADSSDGGEETGPRGVGRRATGGGGRGSGGEVLACLELLKSCLACVSLESHQDLVVKLSEVLVGVSVVAAIEGPASLADLASASMVGLVTGASGHTEVVQGVVLQALMPVILMNTGKADVPPRSRDCVKAHNSAVDTAKAIAAALRNAATKNGYETRGATPSTPGQSTDVPSEGDLASQSPSATTPAGGGYDTSSSPXXXXXXXXXGGAPVVVVGKKGDGXXXXXXXXXXX-KPVLTLLQHLCVSSPERAEGRARLAEGLAGLLPELEEHDRARFVVFLAK--------------ELSSRLLTEDWPWATDDNSSADGSR------EGPAVSTLRANGGGDGPSPCLTDGGGRTMLDLVVARAADTAPTVRSKAASTLSEVLSGIQGRRSGYKGAAFRQAVMEACGWGEAGMERGHDGPLLETIRTRVEDEKANVRRNAVPALEAILKLSPAFSSGRASADVGEAAIGKEHEADFELLQERCNDISLSTRKAAMGALSSLLMLRPSDETLQKAWVSSVLPLAGDPEQTCQ 606          
BLAST of mRNA_E_fasciculatus_S2_contig6940.15076.1 vs.
Match: condensin-2 (complex subunit D3-like isoform X1 n=3 Tax=Actinia tenebrosa TaxID=6105 RepID=A0A6P8I066_ACTTE)

HSP 1 Score: 114 bits (285), Expect = 4.180e-22
Identity = 88/319 (27.59%), Postives = 150/319 (47.02%), Query Frame = 3
Query: 1359 VLTLLQHLCVSSPERAEGRARLAEGLAALLPELEEPDRVRFVVFLAKLSRSAKIVHRGFSVELSSRLLTEDWPWAADNSXXXXXXXXXXXXXEGSAVSTPRANGDADGPSPCLTDGGGRTMLDLVVARAADTAPTVRSKAASTLSEVLSGIQGRRSGYKGGAFRQAVMEACGWGEAGMERRHDGPLLETIRTRVEDEKANVRRNAVPALEAILKLSPAFSGGGASADGGEAAIGKEHEADFELLQERCNDMSLSTRKAAMGALSSLLMLRPSDESLQNAWVSSVLPLAGDPEQTCQNRLVEIIRTVLIDRVVEWHKTEA 2315
            V  L+QHLC   P++A+ R  +A+    +L  L +      + ++ K S++AK+ +R F+++  S LL ++                            P+     D  +  LT    + +LD+++ R +D APTVR+KA   LS+ ++   G     K    ++A+ E         E    G +   IR R  DEK  VR+ A+ ALE+++ L                 +    + D  +L +RC D +LS RK AM +L++LL  +PSD  LQ+ W+ ++ PL  D E T Q +   I+  V++ ++V  H++ A
Sbjct:  372 VRVLIQHLCTKCPDKADYRVLVAKAAVDVLKSLPDKSYSSLMEWITKYSKNAKMSYRVFALDFISELLLQE--------------------------KRPKNQVQTDQETQVLTTK--KVLLDILIGRCSDRAPTVRAKALQHLSQSIT--SGDAELVK--LVQEALKEPLDKSVNSNEIHTVGSM---IRKRTCDEKVGVRKAALQALESVVHLD----------------LSCLKKPDVMMLHDRCMDPALSVRKQAMVSLTALLQEQPSDTVLQSLWLDAIFPLVLDRETTAQEKCYSILEDVILSKIVPLHRSIA 639          
BLAST of mRNA_E_fasciculatus_S2_contig6940.15076.1 vs.
Match: condensin-2 (complex subunit D3-like n=1 Tax=Acropora digitifera TaxID=70779 RepID=UPI00077A6225)

HSP 1 Score: 108 bits (269), Expect = 2.930e-20
Identity = 91/322 (28.26%), Postives = 147/322 (45.65%), Query Frame = 3
Query: 1359 VLTLLQHLCVSSPERAEGRARLAEGLAALLPELEEPDRVRFVVFLAKLSRSAKIVHRGFSVELSSRLLTEDWPWAADNSXXXXXXXXXXXXXEGSAVSTPRANGDADGPSPCLTDGGGRTMLDLVVARAADTAPTVRSKAASTLSEVLSGIQGRRSGYKGGAFRQAVMEACG-----WGEAGMERRHDGPLLETIRTRVEDEKANVRRNAVPALEAILKLSPAFSGGGASADGGEAAIGKEHEADFELLQERCNDMSLSTRKAAMGALSSLLMLRPSDESLQNAWVSSVLPLAGDPEQTCQNRLVEIIRTVLIDRVVEWHKT 2309
            V  L+Q +C   PERAE R+ +A+ +  ++ +L        V ++ K S++AKI +R F+++L S LL                             S P   G  +     L+      +LD+V+AR +D APTVR+KA    ++ L+             F +A+ +A          +G +    G +   IR R  D+K  VR+ A+ ALE+I++LS                +    +AD   L +RC D +LS RK AM +L++LL  +PS   +Q+ W+  V PL  D E T Q +  +I+  VL+  +    K+
Sbjct:  205 VKVLVQVICTRCPERAEYRSIVAKAVIDIMDKLPVTLYASLVEWINKFSKNAKISYRIFALDLISLLLLRP------------------------EKSCPMEYGTNENIKTLLSK---TYLLDIVIARCSDRAPTVRAKALQYFAQCLTSEDSSLVTNIKAHFNEAIEKATDSTPTLTQTSGQQNESKG-ISAIIRQRTCDDKVGVRKAALEALESIIRLS----------------LDSLQKADVLTLHDRCMDPALSVRKQAMISLTALLQEKPSCTMVQSLWLDGVFPLVMDRETTAQEKCFQILDEVLLSNIAPQSKS 482          
BLAST of mRNA_E_fasciculatus_S2_contig6940.15076.1 vs.
Match: Condensin-2 (complex subunit D3 n=2 Tax=Mizuhopecten yessoensis TaxID=6573 RepID=A0A210PG51_MIZYE)

HSP 1 Score: 106 bits (265), Expect = 1.040e-19
Identity = 93/373 (24.93%), Postives = 158/373 (42.36%), Query Frame = 3
Query: 1359 VLTLLQHLCVSSPERAEGRARLAEGLAALLPELEEPDRVRFVVFLAKLSRSAKIVHRGFSVELSSRLLTEDWPWAADNSXXXXXXXXXXXXXEGSAVSTPRANGDADGPSPCLTDGGGRTMLDLVVARAADTAPTVRSKAAST---------------LSEVLSGIQGRRSGYK---------GGAFRQAVMEACGWGEAGM-----------------------------ERRHDGPLLETIRTRVEDEKANVRRNAVPALEAILKL-SPAFSGGGASADGGEAAIGKEHEADFELLQERCNDMSLSTRKAAMGALSSLLMLRPSDESLQNAWVSSVLPLAGDPEQTCQNRLVEIIRTVLIDRVVEWHKTEA 2315
            V TLLQH+C   P++ E R+R+ + +  +L +L      + V +  +LS+ +KI  R F++E++S LL                              TP  + D             R+++ L++AR +D+APTVR++A +                L E+++   G R  +              +Q   E    G  G                                  D  ++  +R R  DEK NVR++A+ A+E I++  +P +                    + ELL ERC D +LS RK AM +L+SLL+  P++++LQ AW+  V+PL  D E + Q++ +E +  +LI  +V   K+ +
Sbjct:  351 VRTLLQHMCTKVPDKTEYRSRVTQSVIKILKDLPNEAFGKMVEWFYRLSKHSKISSRAFTIEIASMLLV-----------------------------TPERDVDESSGEGLADYVKHRSIMGLLLARCSDSAPTVRARAITAFAQCFVSADNNIKGALREIVTPFPGPRPAHAPHLIPTPMMDNRVQQLTAEDSIQGAGGKTPDCTASNTQAILNPKTPFGGVMLTPFNPNLPDDDGVMSMLRRRSRDEKVNVRKSALLAVENIIRFEAPDY-----------------RRQNLELLVERCRDPALSARKQAMQSLTSLLLEMPTEKTLQQAWLEGVMPLTIDRESSLQDKCMETLEDILIHNIVPAPKSRS 677          
BLAST of mRNA_E_fasciculatus_S2_contig6940.15076.1 vs.
Match: LOW (QUALITY PROTEIN: condensin-2 complex subunit D3-like n=1 Tax=Pecten maximus TaxID=6579 RepID=UPI00145909B1)

HSP 1 Score: 106 bits (265), Expect = 1.050e-19
Identity = 91/368 (24.73%), Postives = 159/368 (43.21%), Query Frame = 3
Query: 1359 VLTLLQHLCVSSPERAEGRARLAEGLAALLPELEEPDRVRFVVFLAKLSRSAKIVHRGFSVELSSRLLTEDWPWAADNSXXXXXXXXXXXXXEGSAVSTPRANGDADGPSPCLTDGGGRTMLDLVVARAADTAPTVRSKAAST---------------LSEVLSGIQGRRSGYKGGAFRQAVME----ACGWGEAGMERR-------------------------------HDGPLLETIRTRVEDEKANVRRNAVPALEAILKL-SPAFSGGGASADGGEAAIGKEHEADFELLQERCNDMSLSTRKAAMGALSSLLMLRPSDESLQNAWVSSVLPLAGDPEQTCQNRLVEIIRTVLIDRVVEWHKT 2309
            V TL+QH+C   P++ E R+R+ + +  +L EL      + V +L +LS+ AK  +R F++++++ LL                             S P  + D +       +    +++ L++AR +D APTVR++A +                L E+++   G R  +         M+         E   E+                                 D  ++  +R R  DEK NVR+ A+ A+E I++  +P +                    + ELL ERC D +LS RK AM +L+SLL+  P +++LQ AW+  V+PL  D E + Q++ +EI+  +L+ ++V  HK+
Sbjct:  350 VRTLIQHMCTKVPDKVEYRSRVTQSVIKILNELPNEAFAKVVEWLYRLSKHAKNANRAFTIDIAAMLL-----------------------------SIPERDVDENFDEGLADNMKHLSLMGLLLARCSDIAPTVRARAITAFAQCFVSSDNNIRVALKEIVTPCLGSRPAHAPHLIPTPAMDNRAQQLTTDEEAAEKTLNRTATNTQSRLNPKTPFGGVLLTPFNPNLADDDGVMSMLRRRSRDEKVNVRKAALLAVENIIRFEAPDY-----------------RRQNLELLVERCRDPALSARKQAMQSLTSLLLEMPEEKTLQQAWLEGVMPLIIDRESSLQDKCMEILEDMLLHKIVPVHKS 671          
BLAST of mRNA_E_fasciculatus_S2_contig6940.15076.1 vs.
Match: condensin-2 (complex subunit D3-like isoform X1 n=8 Tax=Acropora TaxID=6127 RepID=UPI001CF3792D)

HSP 1 Score: 103 bits (256), Expect = 1.180e-18
Identity = 87/321 (27.10%), Postives = 146/321 (45.48%), Query Frame = 3
Query: 1359 VLTLLQHLCVSSPERAEGRARLAEGLAALLPELEEPDRVRFVVFLAKLSRSAKIVHRGFSVELSSRLLTEDWPWAADNSXXXXXXXXXXXXXEGSAVSTPRANGDADGPSPCLTDGGGRTMLDLVVARAADTAPTVRSKAASTLSEVL----SGIQGRRSGYKGGAFRQAVMEACGWGEAGMERRHDGPLLETIRTRVEDEKANVRRNAVPALEAILKLSPAFSGGGASADGGEAAIGKEHEADFELLQERCNDMSLSTRKAAMGALSSLLMLRPSDESLQNAWVSSVLPLAGDPEQTCQNRLVEIIRTVLIDRVVEWHKT 2309
            V  L+Q +C   PERAE R+ LA+ +  ++ +L        V ++ K S++AKI +R F+++L S LL     +  + S                       +G  +     L+      +LD+V+AR +D APTVR+KA    ++ L    S +      +   A  +A        +   ++     +   IR R  D+K  VR+ A+ ALE++++LS                +    + D   L +RC D +LS RK AM +L++LL  +PS   +Q+ W+  V PL  D E T Q +  +I+  VL+  +    K+
Sbjct:  373 VKVLVQVICTKCPERAEYRSVLAKAVVDIMDKLPVTLYASLVEWINKFSKNAKISYRIFALDLISLLL-----FRPEKSCPM------------------EEHGTNENIKTLLSK---TYLLDIVIARCSDRAPTVRAKALQYFAQCLTSEDSSLVVNIKAHLNEAIEKATDSTPTLTQTSGQQSESKGISAIIRQRTCDDKVGVRKAALEALESVIRLS----------------LDSLQKEDVLTLHDRCMDPALSVRKQAMISLTALLQEKPSCTMVQSLWLDGVFPLVMDRETTAQEKCFQILDEVLLSNIAPQSKS 651          
BLAST of mRNA_E_fasciculatus_S2_contig6940.15076.1 vs.
Match: Condensin-2 (complex subunit D3 n=2 Tax=Marmotini TaxID=337730 RepID=A0A8C5YT73_MARMA)

HSP 1 Score: 102 bits (253), Expect = 2.390e-18
Identity = 93/323 (28.79%), Postives = 134/323 (41.49%), Query Frame = 3
Query: 1356 PVLT-LLQHLCVSSPERAEGRARLAEGLAALLPELEEPDRVRFVVFLAKLSRSAKIVHRGFSVELSSRLLTEDWPWAADNSXXXXXXXXXXXXXEGSAVSTPRANGDADGPSPCLTDGGGRTMLDLVVARAADTAPTVRSKAASTLSEVLS-GIQGRRSGYKGGAFRQAVMEACGWGEAGMERRHDGPLLET---------IRTRVEDEKANVRRNAVPALEAILKLSPAFSGGGASADGGEAAIGKEHEADFELLQERCNDMSLSTRKAAMGALSSLLMLRPSDESLQNAWVSSVLPLAGDPEQTCQNRLVEIIRTVLIDRV 2291
            PVL  LLQH+C    +++E R   A+ L  LL +L   D   FV +L K SRS+KI HR F++++   LL                        E     T             L       + +++  R  D APTVRSKA S+ +  L   I               ++   G         H G LL           +R R+ DEK NVR++AV  L  ILK S  F                  E D   LQ+ C D ++S RK A+ +L+ LLM +P    +Q AW+  V+P+  D E T Q + +E +  +L+  +
Sbjct:  351 PVLRILLQHICAKVIDKSEYRTFAAQSLVQLLSKLPSADYATFVAWLYKYSRSSKIPHRVFTLDVVLALLE---------------------LPEREIDGTVSLEHQKFLKHKFL-------VQEIMFDRCLDKAPTVRSKALSSFAHCLELSISNASESVLELLINSPIVSQLG--------THTGTLLRNSSERCVMAMLRKRIRDEKTNVRKSAVQVLVNILKHSDIFG----------------MEEDLSTLQDLCRDPAVSVRKQALQSLTELLMAQPRCVLIQKAWLMGVIPVVMDCESTVQEKALECLDQLLLQNI 621          
BLAST of mRNA_E_fasciculatus_S2_contig6940.15076.1 vs.
Match: condensin-2 (complex subunit D3 n=1 Tax=Lingula unguis TaxID=7574 RepID=A0A1S3I599_LINUN)

HSP 1 Score: 101 bits (251), Expect = 4.680e-18
Identity = 95/367 (25.89%), Postives = 161/367 (43.87%), Query Frame = 3
Query: 1368 LLQHLCVSSPERAEGRARLAEGLAALLPELEEPDRVRFVVFLAKLSRSAKIVHRGFSVELSSRLLTE-----DWPWAADNSXXXXXXXXXXXXXEG-SAVSTPRANGDADGPSPCLTDGG---GRTMLDLVVAR--------AADTAPTVRSKAASTLSEVLSGIQGRRSGYKGGAFRQAVMEACGWGEAGMERRHDGP------------------------------------LLETIRTRVEDEKANVRRNAVPALEAILKLSPAFSGGGASADGGEAAIGKEHEADFELLQERCNDMSLSTRKAAMGALSSLLMLRPSDESLQNAWVSSVLPLAGDPEQTCQNRLVEIIRTVLIDRVVEWHKT 2309
            LLQH+C   P+RAE RA++A+ +  LL EL      R + ++ + SR AKI +R F++E+ + LL+E     D    AD++                S V++   +    G S C+       G T+ ++   R         +   PT  ++  +  SE   G +G        +  + + E      A   +  +GP                                    ++  +R R  DEK NVR+ A+ ALE ++++               AA  K+   D ++L ERC D +LS RK AM +L+ LLM  P + ++Q+ W+  VLP+  D E   Q R +EI++ +L++ +V +H++
Sbjct:  320 LLQHMCTKVPDRAEYRAKVAQAVVTLLQELPNSAYARMMEWIYRYSRHAKISYRVFALEIVTLLLSEPERKQDDSVHADHAVYLSQSFLIQMVLARCSDVNSSVRSRAIAGFSQCVASKDSAIGLTIKEMFTPRNGPLGRVPISRVVPTPETQRTAPASEG-QGSEGHTPQETETSSDKTIDETSDKTVATEGQALEGPPAAATVDPKESTPLPVAALAVQLTPGAEFSLADGKGVVSMLRRRACDEKVNVRKAALQALENVIRMEG-------------AAFNKQ---DLDILNERCQDPALSVRKQAMMSLTQLLMEMPDNRTVQSLWLDGVLPMVMDRETGAQERCMEIVQDILLNNIVPYHRS 669          
BLAST of mRNA_E_fasciculatus_S2_contig6940.15076.1 vs.
Match: condensin-2 (complex subunit D3-like isoform X1 n=3 Tax=Haliotis TaxID=6452 RepID=UPI00201EEA92)

HSP 1 Score: 100 bits (248), Expect = 1.080e-17
Identity = 94/383 (24.54%), Postives = 164/383 (42.82%), Query Frame = 3
Query: 1356 PVLTLLQHLCVSSPERAEGRARLAEGLAALLPELEEPDRVRFVVFLAKLSRSAKIVHRGFSVELSSRLLTEDWPWAADNSXXXXXXXXXXXXXEGSAVSTPRANGDADGPSPCLTDGGGRTMLDLVVARAADTAPTVRSKAASTLSEVLS--------------------------------GIQGRRSGY-KGGAFRQ--AVMEACGWGEAGMERRHDGPLLET----------------------------IRTRVEDEKANVRRNAVPALEAILKL-SPAFSGGGASADGGEAAIGKEHEADFELLQERCNDMSLSTRKAAMGALSSLLMLRPSDESLQNAWVSSVLPLAGDPEQTCQNRLVEIIRTVLIDRVVEWHKTE 2312
            P   LLQHLC   P++ E R ++A+ + +L  +L +   V+ + ++ +LS+  KI +R  S+++ + LL        D               E S  +T R                   ++ L+++R +D APTVR++A S  + +LS                                G+  R   + +G A  Q    +EA G   +  E+  DG  +++                            +R R +D+K NVR+ A+ ALE +++  +P +                  + D  +L+ERC D SLS RK AM +L+ LL+   +D  +Q AW+  VLPL  D E T Q++ +E +  +++D VV  ++++
Sbjct:  364 PTTHLLQHLCTKVPDKTEYRTKVAQTVVSLFEDLPDEAYVKMMEWMKRLSKHQKINNRVMSLDVVALLLAAPQRQLKDE-----------VPAEQSLYTTHRF------------------LVILLISRCSDIAPTVRTRAISAFAHLLSSGDGSLLSTLREMVTPKVGPRLGGPVRLIPTPGVDTRTVAHTEGTAMDQNDQTVEAEG---STAEKTADGVTVDSQAKTPFNQIELTPGFNANLIDDDGVISMLRRRSQDQKVNVRKAALQALECMIRFEAPDY-----------------RKEDLAILEERCADPSLSVRKQAMMSLTELLLQHTTDTKMQRAWLDGVLPLVMDRETTLQDKCIETLEDIVLDNVVPHNRSK 697          
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig6940.15076.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Cnd11.190e-29076.53domain-containing protein n=1 Tax=Ectocarpus silic... [more]
Uncharacterized7.580e-26780.93protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
condensin-24.180e-2227.59complex subunit D3-like isoform X1 n=3 Tax=Actinia... [more]
condensin-22.930e-2028.26complex subunit D3-like n=1 Tax=Acropora digitifer... [more]
Condensin-21.040e-1924.93complex subunit D3 n=2 Tax=Mizuhopecten yessoensis... [more]
LOW1.050e-1924.73QUALITY PROTEIN: condensin-2 complex subunit D3-li... [more]
condensin-21.180e-1827.10complex subunit D3-like isoform X1 n=8 Tax=Acropor... [more]
Condensin-22.390e-1828.79complex subunit D3 n=2 Tax=Marmotini TaxID=337730 ... [more]
condensin-24.680e-1825.89complex subunit D3 n=1 Tax=Lingula unguis TaxID=75... [more]
condensin-21.080e-1724.54complex subunit D3-like isoform X1 n=3 Tax=Halioti... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig6940contigE_fasciculatus_S2_contig6940:397..7274 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score752.3
Seed ortholog evalue1.6e-214
Seed eggNOG ortholog2880.D7FP86
Model size2519
KEGG koko:K11491
Hectar predicted targeting categoryother localisation
Exons9
EggNOG free text desc.meiotic chromosome condensation
EggNOG OGsKOG0413@1,KOG0413@2759
Cds size1611
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig6940.15076.1prot_E_fasciculatus_S2_contig6940.15076.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig6940 2769..7274 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842351.2158484-UTR-E_fasciculatus_S2_contig6940:396..5521696842351.2158484-UTR-E_fasciculatus_S2_contig6940:396..552Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig6940 397..552 +
1696842351.2307174-UTR-E_fasciculatus_S2_contig6940:1639..22951696842351.2307174-UTR-E_fasciculatus_S2_contig6940:1639..2295Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig6940 1640..2295 +
1696842351.2422104-UTR-E_fasciculatus_S2_contig6940:2672..27681696842351.2422104-UTR-E_fasciculatus_S2_contig6940:2672..2768Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig6940 2673..2768 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842351.2543008-CDS-E_fasciculatus_S2_contig6940:2768..28841696842351.2543008-CDS-E_fasciculatus_S2_contig6940:2768..2884Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig6940 2769..2884 +
1696842351.2635567-CDS-E_fasciculatus_S2_contig6940:3109..35841696842351.2635567-CDS-E_fasciculatus_S2_contig6940:3109..3584Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig6940 3110..3584 +
1696842351.2738285-CDS-E_fasciculatus_S2_contig6940:3935..42041696842351.2738285-CDS-E_fasciculatus_S2_contig6940:3935..4204Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig6940 3936..4204 +
1696842351.2829788-CDS-E_fasciculatus_S2_contig6940:4667..48421696842351.2829788-CDS-E_fasciculatus_S2_contig6940:4667..4842Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig6940 4668..4842 +
1696842351.2955124-CDS-E_fasciculatus_S2_contig6940:5494..56801696842351.2955124-CDS-E_fasciculatus_S2_contig6940:5494..5680Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig6940 5495..5680 +
1696842351.3066459-CDS-E_fasciculatus_S2_contig6940:6283..64001696842351.3066459-CDS-E_fasciculatus_S2_contig6940:6283..6400Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig6940 6284..6400 +
1696842351.3172047-CDS-E_fasciculatus_S2_contig6940:7001..72741696842351.3172047-CDS-E_fasciculatus_S2_contig6940:7001..7274Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig6940 7002..7274 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig6940.15076.1

>prot_E_fasciculatus_S2_contig6940.15076.1 ID=prot_E_fasciculatus_S2_contig6940.15076.1|Name=mRNA_E_fasciculatus_S2_contig6940.15076.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=537bp
MVGLVTGASGHTEVVQGVVLQALMPVILMTTGKADVPPRSRDCVKAHNSA
VDTAKAIAAALRNAAPKNGYKTRGVTPSTPGRSTDVPSGGSLASQSPSAA
TPAGGGDGTSASPTGDDSIASPDGQPVVMVGKKGDGNGQTGTGGGGGGKP
VLTLLQHLCVSSPERAEGRARLAEGLAALLPELEEPDRVRFVVFLAKLSR
SAKIVHRGFSVELSSRLLTEDWPWAADNSSSSSSSSSAHGGGEGSAVSTP
RANGDADGPSPCLTDGGGRTMLDLVVARAADTAPTVRSKAASTLSEVLSG
IQGRRSGYKGGAFRQAVMEACGWGEAGMERRHDGPLLETIRTRVEDEKAN
VRRNAVPALEAILKLSPAFSGGGASADGGEAAIGKEHEADFELLQERCND
MSLSTRKAAMGALSSLLMLRPSDESLQNAWVSSVLPLAGDPEQTCQNRLV
EIIRTVLIDRVVEWHKTEAGTGKNKGRGSSTSSRPTRGVSNSVSDDGGAG
EGPAGGAAGETNAGGVSSVWPLLAKAGQGGAHKCLKK
back to top

mRNA from alignment at E_fasciculatus_S2_contig6940:397..7274+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig6940.15076.1 ID=mRNA_E_fasciculatus_S2_contig6940.15076.1|Name=mRNA_E_fasciculatus_S2_contig6940.15076.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=6878bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig6940:397..7274+ (Ectocarpus fasciculatus EfasUO2)
ATGGGATCTTTGATCGATCAGACGGAGGCTGCTCTCGCCAGAGTGCTGAG CTTGTGCAGCAGCGGTCCCGTCGGGGAGCAGGACGTAGATGCTCTCCAAC GCCACGACGAGGCAGCACTGGCATTGCTTGATATCAACGACGACGATGCC ATCAAGGTGGGGGGGTTGGGAAGAGATATGGAGCAAACAAATGCAACGTG CGCGAACTTCAGTACAGCAGTATCCCCCAAGATTGCGAAGTGGGTGTCTT TCAATCGCCCGCAGGCATAGGTCGCTATTTAGCACGGCAGCAACAAGCAA CCTCCAAAGCTGAAAGCACCTCAACGAAAATAGGGCTTGATGGGCGGTCG CGTTGGGTGTCAGGTTCTGTACCGCTCTACTGAGTGGAAGTCTGTGATGC GTTCTAGCGCTCTCTCTTTCAACACTGAAAAGTTGACAAAGTTGCCGTTG GTGCTTTTTCTCTTTTTCTTGAACCCCCATTTTCGCTGGAGAACCCGCAG TGATGCATTGATCACCAACATGAACAGGAACACTGCCGACTGCACCAACG CCACAACAACCGTCGACAGCTCTTTGCCTACTTCTGATGTGCTCTGGTAC ACACAGTCACAGAACATATCAAAAGAGGAAGCGGCCTGTGTTCACCTGCT TGAAGCTCATGTTGTACAAATAGACTACAAGTGCTCACGCTTCTTCCACC ACTTCGCACAAAGCAGCAGCGCAGTTTTAGTGTTGGTGCAACTCCTGTAT GTATGCACGAGTGTCGGGGTCTCAGCTGCTCAAAATCTGTGCACGCATCA TGGTTCTGAGCTTGCAAGGCAGCGGGGATTGTGCTACACCGAGGGGTTGT CTTTGAGGGGGGTGGGGGTACCAGCGTTGCTTCTGCTGCTCGGCAACGGC AACAGCTGCGGTTCTTCATGCTCGGAGTTTTTTTTTCTTCGTACATCACA AGGCCGCGCTCTCAGAACCAGTGTCACCACACCCAGGTAGTTGATTCCAC GGTTTTGACCATCCGAAGGCTGGGCAGATGGATGCCTTTATGGTTCTGGG GAGACCCAAGCGGAAGCAGTTACTGTGAACAATGTCGTGAATCGTGGCTT CCAGAGCTAACAGTACATAGCTGAGCAACCTCCACGCACTGCGTACGACG GAGCTACATACGCAAGAGGCGGGCATCATCCCATCAACTTGCATCTACAG GCATCTCAGCAAGCCCATTGCTGCTTCTGATGTTTTGTCTCAGGCGCTTG GGCCGTGGATAAAATGCCTGGAGGCATGGTCCCGGAAGACTAATGCCGCC CAAGGGGCACAAGAAGGACCCTGGACTACCATTACCCAACCGTGCACGGC CGTCCTCTCGAGGGCCGACCCCTCGTCAGAGACGCCGGCGGCCGCGGCCC CTGGAACTCCTCCCCTCGCCGCGCACAAGGCTCTAACGGTAATCCTTTTC CGGGCGATGCTCCTAGGGGAGGAGACGGAGGGGTCCCCCCACCGCAACCC CTCCCCGGCGGCGTGGGCGGCCGCTCGCGCCTACCTCCTCATGCTCTCGC TCCCCGGCGCAGCGCCGTACGGCGTGCTGCAGTCCGCGGTGCTGGGCATG GTGCTCACCAACCTCCGCTCCTGGTGCCGCAACTCCGGCGTTTACCGTCC CGGGGGGGGGGGGCTCCGGGAGTGGAAGGGGGGGGAGGTAGGAAGAAGGC CCCCCAGAAGCGCAGGCGGGGGAAAGATGCCGAGGGAGGCGAGGATGGCG ACAGCAGCGATGGCGAGGAGGAGGCGGGTCCCCGCGGAGTGGGGCGGCGC GCGGCCGGGGGGGGTGGGAGAGGGTCTGGTGGAGAAGTGGTGGCGTGTCT GGAGCTGCTAAAGGCCTGTCTCGCCTGCGTGCCGCTGGAGTCCCACCAGG TTGGTGCTGCTGGTGTTTCTCGTCGGTTGGGCGCCTTTTCGCCCATCCGT CCTCAAATCCGTCAATGGTTTCTTGGACGATGTTTTTTCATCATGTTCAT TGAACCGGGGATGCACTGCGAACCTTGTATTTCGGCAGCAGACCAGGTCT ATTGGGGTCGTCCGGTTCTGTTTTCGATCGTTTTAACAAACAAAATCGCT TCGGTAACGCCTCCCAAACCATCTTCGAGAGCGAGAAAAAACCGCGTATC CCTTGGATAGTTCGCGCCAGACTGTAACCCCTTCGGATGATAATCACGAC AATTATTATTCCCTCTAACGACAAGCATGTAATATTCTCCTATCTCCTCT TGCCATCGTCTCGTGTGTTATTTCAGGATTTGGTGGTTAAGCTTAGCGAG GTTCTGGTGGGTGTGTCAGTGGTCGCCGCCATCGAGGGGCCTGCCTCCCT AGCCCACTTGGCCTCGGCAAGCATGGTCGGTCTCGTGACTGGCGCCTCGG GCCACACGGAGGTCGTCCAAGGAGTCGTGCTGCAGGCGCTGATGCCGGTG ATCCTCATGACTACGGGAAAGGCAGACGTTCCCCCGAGGTAAGTCAAGCT TTTTCGTTCGGTCTTACGTTTGCTTCGTCTGGAGCAACGTCCAGATCCAT TCGATTCAAGCGCTTTGAAGTTAATTGGATATGCGAATCAAGTCGTCGAT CTATAGTGGAGCGCTTTCATACTGGGCAACAACAGATTCGATGACGGAAT GTCCCATCGAAGGCCGACACCTAACCTCACGCCTTTCCTCCTGCAACTTG GCGACCCTTGCAGGAGCCGGGATTGCGTCAAGGCTCACAACAGCGCTGTC GACACCGCCAAGGCAATCGCCGCCGCCCTCAGAAACGCCGCCCCGAAAAA CGGTTACAAAACCCGGGGGGTGACGCCAAGCACCCCCGGTCGATCCACCG ACGTGCCTTCCGGAGGCAGCCTAGCATCGCAATCGCCCTCTGCCGCGACT CCGGCGGGAGGGGGGGATGGTACCTCCGCGTCCCCTACCGGGGATGATTC GATTGCATCCCCTGATGGGCAGCCTGTTGTGATGGTTGGGAAGAAGGGAG ATGGTAACGGGCAAACCGGCACTGGTGGTGGTGGCGGTGGTAAACCGGTC TTGACCCTGTTGCAGCATCTGTGCGTGTCTTCGCCCGAGCGGGCGGAGGG CAGGGCGAGGCTCGCGGAAGGCTTGGCGGCGTTGCTGCCGGAGCTGGAGG AGCCCGACCGCGTGCGCTTCGTGGTTTTCCTGGCCAAGGTGTGTTGTTGT TGTTGTTGTTGTTGTTGTTGTTGCTTCTGATATTACATTTTTTTGTTGGT GCTGCTTTCGTCGATTAGTTCGATGCGAGCATTGATTCGTTTCCGTGCAG ATACCGCTGCTGTTTGCGGTGGGCGGGTGTCTTGCTTTTCTTCACGGGAC GACAGGTGTAGGTGAATGCAGGTGAAGGCGTGTTGCTTGTTTCCCGCACC TCAACAACTGGCTGCAAGGTTACTCTCGACGTTAGCATCGAGTAAGCTCT CCGCTGATGACCACAACACTAACCTAATCGAGTCTCATCGACGACTACTG CTCAACCGGATACGCCCCGTGATCCGTGCACCAAACCAGCTTTCGCGCAG CGCCAAGATCGTGCATCGCGGGTTCTCCGTAGAACTCTCGTCTCGCCTTC TCACGGAGGACTGGCCTTGGGCTGCCGACAACAGCAGCAGCAGCAGCAGC AGCAGCAGCGCCCATGGCGGTGGTGAAGGATCGGCTGTTTCGACGCCGCG CGCTAACGGGGATGCCGACGGTCCGTCCCCGTGCTTGACGGATGGAGGCG GTAGGACGATGCTCGACCTGGTGGTTGCAAGGGCGGCAGACACGGCTCCG ACGGTTAGGTGAGGATGGGGAAACTGGAAACCTGTCTAGAAATCGTGAGG TTGTCTTTTTCCGTGCTTTTTTTTCTTGCGATGTACCCCTATTCGTTTCT CTTATTGTTGTCAAGTACGAGTTCGGCCTTTTTCGTGAGAGTTTTTTTGT AAGGTACTGCTATGGCTGTTCGACAATATATCCCCTTTTGTGAGTTTTGT TTTTTGTCGAGTTAAGAGTGCGTCCCTTGTACATCGAGGTCGACTCTTGC TTTATTCTGATGGTGTGCGTCTGGTCATCTTTGACTGCTGTTGACGTTCC ACAAATGACAGCTGCATCATCGCACCTCCTACAATACATAAATCCCTACA GGCCCTCGGCCGCTTGACGATATACTTAGCACTGCCACACGCCCCCTCTG TTGTGATCGCTTCGGCTCCTTCTTTCTGCATTGTATTATTTTTAATATCT TCGGCTGTGTGTGATTAACAGGTCCAAAGCGGCGTCGACCCTTTCAGAAG TCCTCTCCGGGATCCAGGGGCGCCGCAGCGGGTACAAGGGGGGGGCGTTC CGACAGGCGGTGATGGAGGCGTGCGGGTGGGGGGAAGCGGGGATGGAACG GCGTCACGACGGGCCTCTGCTCGAGACCATCCGTACCCGAGTCGAGGTAT GTATCCTATGTATGGTAGAAGTATTGTAGGAATTTACATTTTCGTTTCGT TTTTTTTTATGCCGACAGGGGTGTTGATACCACTTCGACATATTTTTCAT TCGTTCTACAGCCTGGAAATAAATGTGGGTACCACGATCGTCATAGGTGT GTTGTTAAAATTTTTTTCGTGTTTTGTTTTAGCAAAGAACACACGCAATT GTACAAGAACCCATACATTCGTTCGATAGCTGTGATCTCTGCAGGCTATC TATCTTTCCTATCGTATCGTATCGTATCGTATCTCTCATTGGTTCCCTAA GGCGAAACGCACCGATCCTGTTCTGTCCTGAATCAACCCTTCGACAACAT CCCGTAATATTGTCTCCGAAAAACCGAAACCATTCCCCAAACCAAAACAT TTAATGATTGTCGACGAGTCAGTTGTGAAAAAAGAGGGCATCGTCCTCGA TAGTTGTTCGGCAGATGGGGACCTTGGATAATTGTCTCGTCGCCGATGCC ACTATTACACTACAGCACTGCTGTGAAAAGAAAATCATCAATCGTTCTCG GCAGGCGTTGGGGTGATGACGACCTACGTAAAACGTCACCCCCAACACAT GCATTTTTACCAATTATTTTCGATTTTTTTTTGATCGTCCAACCACAGGA CGAGAAGGCCAACGTTCGGAGAAACGCGGTGCCGGCGCTGGAGGCTATTC TCAAGCTTTCTCCTGCCTTTTCCGGCGGCGGGGCATCAGCGGACGGCGGT GAGGCTGCGATCGGGAAGGAGCACGAGGCTGACTTCGAGCTCCTGCAGGA GAGGTGCAACGACATGTCGCTCTCCACCCGTAAGGTAATGGGACGACTTG TTTGCGCCAGCCACAGCTTGGCACGGCCAGACAAACCACACCTGGAGGCA CGGACGGTGTGATTGTGTAAGATACCACACCCCCTGGACGACCGATTTTC AAAGCTCGACTACTCACTGCACGAGGAAGAATGCGCCGGGATCGAATGAT GCTTACCTATTCGGAACGCTTGCGTTCTCGACGATACGTATGACTCCAAC GCCTCGACGAGACGTATGACTCCAACGCCACGCTTGGCACCTTCACCTTC ACCTTGTTTTTGCGGCAGAGCGTTCGAGCTTTGAGACTCGGTCCAGGGGA TGTGGTACTGCTGTAAGATGCAGCTGTGGTTGCTAGGCGTACATAGAGTG TCACGCTGTCTTGGTTGTTTGATCCTTTGCTGATGGTATAGGTTTGGTGC AGTGGTTCGTGGCATCGACGTGACTTCTTTTAGGCTTGAATGCATGTCGC ATATTTCCACGCATGCCCAAAGGGACCAAGGCTGTGCGTGACCTTAACCT GACCACCCCTGACTGTTCTCGTGTTTCAAATTGGCCAATGCCCTAGTCTG ACCAACAATCTGTCGTGTGGCTTCATGTACATGTCAGGCGGCCATGGGAG CACTCTCTTCGCTCCTCATGCTGAGGCCGTCGGACGAATCTCTACAAAAC GCCTGGGTGTCGTCCGTTCTTCCACTCGCCGGGGACCCCGAACAAACCTG TCAGGTACAGCACAGCACTACGTTTTATTGCGCAAGATATCACCCCCCCA TACCAAGCCTGCATCCAGCGGTGTTGATTTTACGAGGGAACAGGAGCCCG GCACGTGAACTAATCTCTGAACAAAGTAATAGGGCGATAAAGACTGATAT ACCTCACCCTTTGATGGAACAATGCACCGGGTGATCGTTACATGGAAGAT GGAAGCCATACAGCAGGAGGTACCCAAACACGCACGAGTTTTTCGAGTAG TCGTGGGGCTCTCTACAGGTGATCTTTCCATCGAAACAGCAGGCATTTTA ATGGCAGCTACTCCACATCTGGTTTGTTTGGGCCACTACTGGCCTGTACT ATGTTCTATCAGCTTGGGTCCTCTCAGAGTCCCCCCCCTCGAGCGATGCT GCCTCCTTCCCAATCTTCTTCCTGCTCGATCTCAACCGGCAGCAGTTGGA CCGCGTTTCCTGTCCGACCTTTCCGTCAGGCTGGTTTCCTTCAGAAAACC TTCTCCTGTTACTTAGGACGTGGGGAGATTTTGTCCTCCCCCTACAATAG CGCCATCGCCTCTCATCTGAACACATCAATGGATGGCTGTTTTTGTTATT TTCAGAACCGATTGGTCGAGATCATCCGGACGGTATTGATCGACCGTGTG GTGGAATGGCACAAAACAGAAGCCGGCACGGGAAAGAATAAGGGCAGGGG GAGCAGCACCAGCAGCAGACCAACCAGGGGTGTCAGCAACAGCGTCAGTG ATGATGGTGGGGCGGGAGAAGGACCGGCTGGGGGGGCGGCGGGAGAGACT AACGCCGGAGGGGTTTCCAGTGTATGGCCGCTGCTGGCCAAGGCCGGGCA GGGGGGCGCCCACAAGTGTCTCAAGAAG
back to top

Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig6940:397..7274+

>mRNA_E_fasciculatus_S2_contig6940.15076.1 ID=mRNA_E_fasciculatus_S2_contig6940.15076.1|Name=mRNA_E_fasciculatus_S2_contig6940.15076.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=1611bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig6940:397..7274+ (Ectocarpus fasciculatus EfasUO2)
ATGGTCGGTCTCGTGACTGGCGCCTCGGGCCACACGGAGGTCGTCCAAGG
AGTCGTGCTGCAGGCGCTGATGCCGGTGATCCTCATGACTACGGGAAAGG
CAGACGTTCCCCCGAGGAGCCGGGATTGCGTCAAGGCTCACAACAGCGCT
GTCGACACCGCCAAGGCAATCGCCGCCGCCCTCAGAAACGCCGCCCCGAA
AAACGGTTACAAAACCCGGGGGGTGACGCCAAGCACCCCCGGTCGATCCA
CCGACGTGCCTTCCGGAGGCAGCCTAGCATCGCAATCGCCCTCTGCCGCG
ACTCCGGCGGGAGGGGGGGATGGTACCTCCGCGTCCCCTACCGGGGATGA
TTCGATTGCATCCCCTGATGGGCAGCCTGTTGTGATGGTTGGGAAGAAGG
GAGATGGTAACGGGCAAACCGGCACTGGTGGTGGTGGCGGTGGTAAACCG
GTCTTGACCCTGTTGCAGCATCTGTGCGTGTCTTCGCCCGAGCGGGCGGA
GGGCAGGGCGAGGCTCGCGGAAGGCTTGGCGGCGTTGCTGCCGGAGCTGG
AGGAGCCCGACCGCGTGCGCTTCGTGGTTTTCCTGGCCAAGCTTTCGCGC
AGCGCCAAGATCGTGCATCGCGGGTTCTCCGTAGAACTCTCGTCTCGCCT
TCTCACGGAGGACTGGCCTTGGGCTGCCGACAACAGCAGCAGCAGCAGCA
GCAGCAGCAGCGCCCATGGCGGTGGTGAAGGATCGGCTGTTTCGACGCCG
CGCGCTAACGGGGATGCCGACGGTCCGTCCCCGTGCTTGACGGATGGAGG
CGGTAGGACGATGCTCGACCTGGTGGTTGCAAGGGCGGCAGACACGGCTC
CGACGGTTAGGTCCAAAGCGGCGTCGACCCTTTCAGAAGTCCTCTCCGGG
ATCCAGGGGCGCCGCAGCGGGTACAAGGGGGGGGCGTTCCGACAGGCGGT
GATGGAGGCGTGCGGGTGGGGGGAAGCGGGGATGGAACGGCGTCACGACG
GGCCTCTGCTCGAGACCATCCGTACCCGAGTCGAGGACGAGAAGGCCAAC
GTTCGGAGAAACGCGGTGCCGGCGCTGGAGGCTATTCTCAAGCTTTCTCC
TGCCTTTTCCGGCGGCGGGGCATCAGCGGACGGCGGTGAGGCTGCGATCG
GGAAGGAGCACGAGGCTGACTTCGAGCTCCTGCAGGAGAGGTGCAACGAC
ATGTCGCTCTCCACCCGTAAGGCGGCCATGGGAGCACTCTCTTCGCTCCT
CATGCTGAGGCCGTCGGACGAATCTCTACAAAACGCCTGGGTGTCGTCCG
TTCTTCCACTCGCCGGGGACCCCGAACAAACCTGTCAGAACCGATTGGTC
GAGATCATCCGGACGGTATTGATCGACCGTGTGGTGGAATGGCACAAAAC
AGAAGCCGGCACGGGAAAGAATAAGGGCAGGGGGAGCAGCACCAGCAGCA
GACCAACCAGGGGTGTCAGCAACAGCGTCAGTGATGATGGTGGGGCGGGA
GAAGGACCGGCTGGGGGGGCGGCGGGAGAGACTAACGCCGGAGGGGTTTC
CAGTGTATGGCCGCTGCTGGCCAAGGCCGGGCAGGGGGGCGCCCACAAGT
GTCTCAAGAAG
back to top