mRNA_E_fasciculatus_S2_contig6935.15071.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig6935.15071.1
Unique NamemRNA_E_fasciculatus_S2_contig6935.15071.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig6935.15071.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FMC0_ECTSI)

HSP 1 Score: 559 bits (1441), Expect = 6.710e-199
Identity = 313/356 (87.92%), Postives = 330/356 (92.70%), Query Frame = 1 
Query:    1 MSVAPAATLSPALSAEPPTAAIVANEPVPAEGGGRVSATSTPGXXXXXXXXXXXXXEHAADVESGTRRPMPIPAAVAAPEAGGPTADGVEKSCGLTSRRWHQLFALGIGLLEAAFSLSNAIAEDAFKIEDAAGFVYSASAVQESVGLAVMLLLSLCRRRGGEQGAAMEGFGSPLAILVNGVRQTDRSLTRSGHFGAMCQAAVVAVTGLVLLQKVDARGFVILFYALLVLFCGFCLVTNNVFCAGYFRNLVVVSRLDSALDPDNPAVGLTYALVALPLGVDVAEVVFLFLGGQSWNATILALLDVGVTAVVVFPFGYRRFMRDFPEAARRLGLDSGRACEHY-CFCNLDALLHVVFV 1065
            MSVAP AT+SP  S EPPTA I+ANEPVPAEGGG +SATS+  XXXXXXXXXXXX EHAADVESGTRRP+P  AA AAP AGGPTAD VEKSCGLTSRRWHQLFALGIGLLEAAFSL+NAIAEDAFKIEDAA FV+SASAVQESVGLAVMLLLSLCR R GEQ A ME FGSPLAILVNGVRQTDRSLT++GHFGAMCQAAVVAVTGLVLLQKVDARGFVILFYALLVLFCGFCLVTN VFCAGYFRNLVVVSRLDSALDPDNPAVGLTYAL+ALPLGVDVAE++FLFLGGQSWNATILALLDVGVTA+VVFPFGY+RFM  FPEAARRLGLDSGRAC+HY C CNL+ LL+VVFV
Sbjct:    1 MSVAPVATVSPVFSDEPPTAVILANEPVPAEGGGWISATSS--XXXXXXXXXXXXEEHAADVESGTRRPIPTRAA-AAPAAGGPTADDVEKSCGLTSRRWHQLFALGIGLLEAAFSLNNAIAEDAFKIEDAASFVFSASAVQESVGLAVMLLLSLCRARVGEQDAVMEEFGSPLAILVNGVRQTDRSLTKTGHFGAMCQAAVVAVTGLVLLQKVDARGFVILFYALLVLFCGFCLVTNTVFCAGYFRNLVVVSRLDSALDPDNPAVGLTYALIALPLGVDVAEILFLFLGGQSWNATILALLDVGVTAMVVFPFGYKRFMTAFPEAARRLGLDSGRACDHYYCCCNLETLLYVVFV 353
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig6935.15071.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized6.710e-19987.92protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FMC0... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig6935contigE_fasciculatus_S2_contig6935:4152..5219 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start1
Model size1068
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-17_003540.1
Cds size1068
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842350.6309907-CDS-E_fasciculatus_S2_contig6935:4151..52191696842350.6309907-CDS-E_fasciculatus_S2_contig6935:4151..5219Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig6935 4152..5219 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig6935.15071.1prot_E_fasciculatus_S2_contig6935.15071.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig6935 4152..5219 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig6935.15071.1

>prot_E_fasciculatus_S2_contig6935.15071.1 ID=prot_E_fasciculatus_S2_contig6935.15071.1|Name=mRNA_E_fasciculatus_S2_contig6935.15071.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=356bp
MSVAPAATLSPALSAEPPTAAIVANEPVPAEGGGRVSATSTPGAAAAAAA
AAVVVEEHAADVESGTRRPMPIPAAVAAPEAGGPTADGVEKSCGLTSRRW
HQLFALGIGLLEAAFSLSNAIAEDAFKIEDAAGFVYSASAVQESVGLAVM
LLLSLCRRRGGEQGAAMEGFGSPLAILVNGVRQTDRSLTRSGHFGAMCQA
AVVAVTGLVLLQKVDARGFVILFYALLVLFCGFCLVTNNVFCAGYFRNLV
VVSRLDSALDPDNPAVGLTYALVALPLGVDVAEVVFLFLGGQSWNATILA
LLDVGVTAVVVFPFGYRRFMRDFPEAARRLGLDSGRACEHYCFCNLDALL
HVVFV*
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mRNA from alignment at E_fasciculatus_S2_contig6935:4152..5219-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig6935.15071.1 ID=mRNA_E_fasciculatus_S2_contig6935.15071.1|Name=mRNA_E_fasciculatus_S2_contig6935.15071.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1068bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig6935:4152..5219- (Ectocarpus fasciculatus EfasUO2)
ATGAGCGTAGCTCCAGCGGCAACGTTGTCTCCAGCGTTGTCTGCCGAGCC
TCCAACAGCAGCTATAGTGGCGAACGAACCGGTCCCAGCCGAAGGCGGAG
GTCGGGTTTCTGCAACCTCAACTCCTGGTGCTGCTGCTGCTGCTGCTGCT
GCTGCTGTTGTTGTTGAAGAACACGCCGCCGATGTGGAGTCCGGTACAAG
ACGACCAATGCCCATCCCTGCTGCTGTTGCTGCACCGGAAGCTGGAGGGC
CAACAGCTGATGGTGTTGAAAAAAGCTGTGGCCTGACTTCGCGTCGCTGG
CACCAGCTCTTCGCTCTGGGCATCGGTCTGCTGGAGGCAGCGTTCAGCCT
CAGCAACGCCATCGCTGAGGACGCCTTCAAGATCGAGGATGCTGCGGGCT
TCGTCTACTCTGCGTCGGCTGTCCAGGAGTCCGTCGGCCTAGCCGTGATG
CTTCTGCTCTCGCTGTGCAGAAGAAGAGGCGGGGAGCAGGGTGCGGCGAT
GGAAGGGTTTGGCTCGCCGCTTGCGATTCTGGTGAACGGCGTTCGGCAGA
CAGACAGGTCTCTAACCAGGAGCGGGCATTTCGGTGCGATGTGCCAGGCG
GCGGTCGTGGCTGTAACAGGCCTCGTGCTGCTGCAGAAGGTGGACGCGAG
GGGCTTCGTTATTCTCTTCTACGCCCTCTTGGTGCTCTTCTGTGGTTTCT
GCCTTGTCACCAACAACGTCTTCTGTGCGGGTTACTTCAGGAACCTGGTC
GTAGTCTCCAGGTTAGACTCTGCGCTGGACCCTGACAACCCGGCTGTCGG
CTTGACTTACGCGTTGGTTGCACTGCCGCTTGGTGTCGATGTCGCTGAGG
TTGTGTTTTTGTTCCTCGGAGGGCAATCGTGGAACGCGACAATATTGGCG
TTACTGGATGTGGGCGTGACGGCCGTAGTCGTCTTTCCTTTCGGGTACAG
GAGGTTCATGAGAGATTTCCCAGAGGCTGCGCGGCGCCTGGGACTAGACT
CGGGCCGCGCGTGCGAGCACTACTGTTTCTGTAACCTGGACGCCCTGTTG
CACGTTGTTTTCGTTTGA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig6935:4152..5219-

>mRNA_E_fasciculatus_S2_contig6935.15071.1 ID=mRNA_E_fasciculatus_S2_contig6935.15071.1|Name=mRNA_E_fasciculatus_S2_contig6935.15071.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=1068bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig6935:4152..5219- (Ectocarpus fasciculatus EfasUO2)
ATGAGCGTAGCTCCAGCGGCAACGTTGTCTCCAGCGTTGTCTGCCGAGCC
TCCAACAGCAGCTATAGTGGCGAACGAACCGGTCCCAGCCGAAGGCGGAG
GTCGGGTTTCTGCAACCTCAACTCCTGGTGCTGCTGCTGCTGCTGCTGCT
GCTGCTGTTGTTGTTGAAGAACACGCCGCCGATGTGGAGTCCGGTACAAG
ACGACCAATGCCCATCCCTGCTGCTGTTGCTGCACCGGAAGCTGGAGGGC
CAACAGCTGATGGTGTTGAAAAAAGCTGTGGCCTGACTTCGCGTCGCTGG
CACCAGCTCTTCGCTCTGGGCATCGGTCTGCTGGAGGCAGCGTTCAGCCT
CAGCAACGCCATCGCTGAGGACGCCTTCAAGATCGAGGATGCTGCGGGCT
TCGTCTACTCTGCGTCGGCTGTCCAGGAGTCCGTCGGCCTAGCCGTGATG
CTTCTGCTCTCGCTGTGCAGAAGAAGAGGCGGGGAGCAGGGTGCGGCGAT
GGAAGGGTTTGGCTCGCCGCTTGCGATTCTGGTGAACGGCGTTCGGCAGA
CAGACAGGTCTCTAACCAGGAGCGGGCATTTCGGTGCGATGTGCCAGGCG
GCGGTCGTGGCTGTAACAGGCCTCGTGCTGCTGCAGAAGGTGGACGCGAG
GGGCTTCGTTATTCTCTTCTACGCCCTCTTGGTGCTCTTCTGTGGTTTCT
GCCTTGTCACCAACAACGTCTTCTGTGCGGGTTACTTCAGGAACCTGGTC
GTAGTCTCCAGGTTAGACTCTGCGCTGGACCCTGACAACCCGGCTGTCGG
CTTGACTTACGCGTTGGTTGCACTGCCGCTTGGTGTCGATGTCGCTGAGG
TTGTGTTTTTGTTCCTCGGAGGGCAATCGTGGAACGCGACAATATTGGCG
TTACTGGATGTGGGCGTGACGGCCGTAGTCGTCTTTCCTTTCGGGTACAG
GAGGTTCATGAGAGATTTCCCAGAGGCTGCGCGGCGCCTGGGACTAGACT
CGGGCCGCGCGTGCGAGCACTACTGTTTCTGTAACCTGGACGCCCTGTTG
CACGTTGTTTTCGTTTGA
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