mRNA_E_fasciculatus_S2_contig6935.15070.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig6935.15070.1
Unique NamemRNA_E_fasciculatus_S2_contig6935.15070.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
BLAST of mRNA_E_fasciculatus_S2_contig6935.15070.1 vs.
Match: PseudoU_synth_2 (domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L3V5_9PHAE)

HSP 1 Score: 524 bits (1349), Expect = 9.200e-183
Identity = 277/290 (95.52%), Postives = 282/290 (97.24%), Query Frame = 1
Query:    1 ATSGVLCVALHREAAARGCEAFRERRAKKSYLAVVQGAVDPESVPRREGEPEGWGEGRDGTGXXXXXXXXXXRKRRPDSVQHTPAHGFFQRKKDLLLRAIELGETLPPEDLAFSKLSWGDIKFDKAASRPFHSAAKADKIRAIAEAEAARFQAAQGAPDRGVFRAPGDGEGELRVDASVSEVPGDFRMRLDEEAGGKGKPSRTFMKVLEHGSYRGRAVTKVLMRPHTGRRHQLRLHALHMGHPILGDTTYGDVDHTIPRMCLHAQSLTLRLAPPSDAACSDTEAPAKQEA 870
            ATSGVLCVALHREAAARGCEAFRERRAKKSYLAVVQGAVDPESVPRRE EP+GW EGRDG GXXXXXXXX  RKRRPDSVQHTPAHGFFQRKKDLLLRAIELGETL PEDLAFSKLSWGDIKFDKAASRPFHSAAKADKIRA+AEAEAARFQAAQGAPDRGVFRAPGDG+GELRVDASVSEVPGDFRMRLDEEAGGKGKPSRTF+KVLEHGSYRGR VTKVLMRPHTGRRHQLRLHALHMGHPILGDTTYGD DHTIPRMCLHAQSLTLRLAPPSDAACSDTEAPAKQE+
Sbjct:  127 ATSGVLCVALHREAAARGCEAFRERRAKKSYLAVVQGAVDPESVPRREEEPDGWREGRDGNGXXXXXXXX--RKRRPDSVQHTPAHGFFQRKKDLLLRAIELGETLSPEDLAFSKLSWGDIKFDKAASRPFHSAAKADKIRAVAEAEAARFQAAQGAPDRGVFRAPGDGDGELRVDASVSEVPGDFRMRLDEEAGGKGKPSRTFVKVLEHGSYRGRLVTKVLMRPHTGRRHQLRLHALHMGHPILGDTTYGDADHTIPRMCLHAQSLTLRLAPPSDAACSDTEAPAKQES 414          
BLAST of mRNA_E_fasciculatus_S2_contig6935.15070.1 vs.
Match: PseudoU_synth_2 (domain-containing protein n=4 Tax=Phytophthora parasitica TaxID=4792 RepID=W2NEC5_PHYPR)

HSP 1 Score: 117 bits (293), Expect = 3.140e-26
Identity = 108/312 (34.62%), Postives = 138/312 (44.23%), Query Frame = 1
Query:    1 ATSGVLCVALHREAAARGCEAFRERRAKKSYLAVVQG--------AVDPESVPRREGEPEGWGEGRDGTGXXXXXXXXXXRKRRPDSVQHTPAHGF----------FQRKKDLLLRAIE---LGET-----------LPPEDLAFSKLSWGDIKFDKAASRPFHSAAKADKIRAIAEAEAARFQAAQGAPDRGVFRAPGDGEGELRV----DASVSEV---PGDFRMRLDEEAGGKGKPSRTFMKVLEHGSYRGRAVTKVLMRPHTGRRHQLRLHALHMGHPILGDTTYGDVDHTIPRMCLHAQSLTLRLAP 819
            ATSGVL V  ++EA A GC  FRE++ +K YLAVVQG        +VD   VP +          + G            R ++  S  H    G+          F  ++  LLR  +    GE            L P +LAF+K++W D+   K     +   AKADK R + E      Q       +  + +    + E  V    DA + E     G FRM +  EA    K S T   VL H  Y G  VTKVL+RP  GRRHQLRLH  H G PI GD TYG  +   PRM LHA  + LR  P
Sbjct:   13 ATSGVLVVGANKEATATGCRLFREKQVQKEYLAVVQGHLPFNPADSVDTAGVPAKACTFS-----KLGLLIQDMEEMERLRNQQRGSRAHQKMPGYPRGARHGPNLFTMEQARLLRESQGDSRGEVRGTSNGAGTRELTPAELAFTKMTWHDLT--KEEKDAYTEKAKADKQRFLKELSEFLSQEKVRLARKRKYESLDREDSEEPVAYIFDAPIIEPHRSTGVFRMLVGTEADAAAKQSTTICFVLGHAMYEGEPVTKVLLRPLNGRRHQLRLHMAHHGFPIAGDVTYGSQEDEAPRMMLHAWRIWLRGRP 317          
BLAST of mRNA_E_fasciculatus_S2_contig6935.15070.1 vs.
Match: RNA (pseudouridylate synthase domain-containing protein 1 n=2 Tax=Phytophthora TaxID=4783 RepID=A0A0W8DGS8_PHYNI)

HSP 1 Score: 117 bits (292), Expect = 1.770e-25
Identity = 108/312 (34.62%), Postives = 138/312 (44.23%), Query Frame = 1
Query:    1 ATSGVLCVALHREAAARGCEAFRERRAKKSYLAVVQG--------AVDPESVPRREGEPEGWGEGRDGTGXXXXXXXXXXRKRRPDSVQHTPAHGF----------FQRKKDLLLRAIE---LGET-----------LPPEDLAFSKLSWGDIKFDKAASRPFHSAAKADKIRAIAEAEAARFQAAQGAPDRGVFRAPGDGEGELRV----DASVSEV---PGDFRMRLDEEAGGKGKPSRTFMKVLEHGSYRGRAVTKVLMRPHTGRRHQLRLHALHMGHPILGDTTYGDVDHTIPRMCLHAQSLTLRLAP 819
            ATSGVL V  ++EA A GC  FRE++ +K YLAVVQG        +VD   VP +          + G            R ++  S  H    G+          F  ++  LLR  +    GE            L P +LAF+K++W D+   K     +   AKADK R + E      Q       +  + +    + E  V    DA + E     G FRM +  EA    K S T   VL H  Y G  VTKVL+RP  GRRHQLRLH  H G PI GD TYG  +   PRM LHA  + LR  P
Sbjct:  127 ATSGVLVVGANKEATATGCRLFREKQVQKEYLAVVQGHLPFNPADSVDTAGVPAKACTFS-----KLGLLIQDMEEMERLRNQQRGSRAHQKMPGYPRGARHGPNLFTMEQARLLRESQGDSRGEVRGTSNGAGTRELTPAELAFTKMTWHDLT--KEEKDAYTEKAKADKQRFLKELSEFLSQEKVRLARKRNYESLDREDSEEPVAYIFDAPIIEPHRSTGVFRMLVGTEADAAAKQSTTICFVLGHAMYEGEPVTKVLLRPLNGRRHQLRLHMAHHGFPIAGDVTYGSQEDEAPRMMLHAWRIWLRGRP 431          
BLAST of mRNA_E_fasciculatus_S2_contig6935.15070.1 vs.
Match: PseudoU_synth_2 (domain-containing protein n=16 Tax=Phytophthora TaxID=4783 RepID=W2Q6J3_PHYPN)

HSP 1 Score: 117 bits (292), Expect = 2.070e-25
Identity = 108/312 (34.62%), Postives = 138/312 (44.23%), Query Frame = 1
Query:    1 ATSGVLCVALHREAAARGCEAFRERRAKKSYLAVVQG--------AVDPESVPRREGEPEGWGEGRDGTGXXXXXXXXXXRKRRPDSVQHTPAHGF----------FQRKKDLLLRAIE---LGET-----------LPPEDLAFSKLSWGDIKFDKAASRPFHSAAKADKIRAIAEAEAARFQAAQGAPDRGVFRAPGDGEGELRV----DASVSEV---PGDFRMRLDEEAGGKGKPSRTFMKVLEHGSYRGRAVTKVLMRPHTGRRHQLRLHALHMGHPILGDTTYGDVDHTIPRMCLHAQSLTLRLAP 819
            ATSGVL V  ++EA A GC  FRE++ +K YLAVVQG        +VD   VP +          + G            R ++  S  H    G+          F  ++  LLR  +    GE            L P +LAF+K++W D+   K     +   AKADK R + E      Q       +  + +    + E  V    DA + E     G FRM +  EA    K S T   VL H  Y G  VTKVL+RP  GRRHQLRLH  H G PI GD TYG  +   PRM LHA  + LR  P
Sbjct:  146 ATSGVLVVGANKEATATGCRLFREKQVQKEYLAVVQGHLPFNPADSVDTAGVPAKACTFS-----KLGLLIQDMEEMERLRNQQRGSRAHQKMPGYPRGARHGPNLFTMEQARLLRESQGDSRGEVRGTSNGAGTRELTPAELAFTKMTWHDLT--KEEKDAYTEKAKADKQRFLKELSEFLSQEKVRLARKRNYESLDREDSEEPVAYIFDAPIIEPHRSTGVFRMLVGTEADAAAKQSTTICFVLGHAMYEGEPVTKVLLRPLNGRRHQLRLHMAHHGFPIAGDVTYGSQEDEAPRMMLHAWRIWLRGRP 450          
BLAST of mRNA_E_fasciculatus_S2_contig6935.15070.1 vs.
Match: Uncharacterized (protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CQW5_PYTOL)

HSP 1 Score: 115 bits (289), Expect = 4.100e-25
Identity = 104/307 (33.88%), Postives = 140/307 (45.60%), Query Frame = 1
Query:    1 ATSGVLCVALHREAAARGCEAFRERRAKKSYLAVVQGAVDPESVPRREGEPEGWG--------------EGRDGTGXXXXXXXXXXRKRRPD---SVQHTPAHGFFQRKKDLLLRAIELGET-LPPEDLAFSKLSWGDIKFDKAASRPFHSAAKADKIRAIAEA-----EAARFQAAQGAPDRGVFRAPGDGEGELRVDASVSEVP------GDFRMRLDEEAGGK-----GKPSRTFMKVLEHGSYRGRAVTKVLMRPHTGRRHQLRLHALHMGHPILGDTTYGDVDHTIPRMCLHAQSLTLRLAP 819
            ATSGV+CV L +EA A  C  FRE+R +K YLAVV+G + P         PEG                +  +              ++RPD    V+  PA  FFQ ++  LLR  +     L  E+       W D+  ++     + + +  DK+R + E      E     AAQ   D    +   +   E    A V + P        FRMR+ +    +     GK S T   VL HG+Y+   +TKVL+RP TGRRHQLRLH  H G PI+GD TYG  + T PRM LHA  L L  +P
Sbjct:  127 ATSGVMCVGLEKEATAMACRLFREKRVQKEYLAVVRGHL-PFHPRELTSLPEGHRVRACTFSKLGLLIQDTEEFDRLKTQRKGTATHQKRPDYPRGVRQAPA--FFQIERSALLREQQNNSRELTAEEAQLVAAKWKDLTSEQ--QNRYQTMSNEDKVRYMKELVRFLDEERERVAAQRRYDVSYAQERNEPTEEEEPVAYVFDDPIAEPGRDTFRMRIGDRTNVEDPTVAGKASATIAFVLGHGTYQDEPMTKVLLRPLTGRRHQLRLHLAHNGFPIVGDATYGSENETAPRMMLHAWRLWLMASP 428          
BLAST of mRNA_E_fasciculatus_S2_contig6935.15070.1 vs.
Match: Rna (pseudouridylate synthase-like protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AWK8_PLAHL)

HSP 1 Score: 114 bits (286), Expect = 5.840e-25
Identity = 100/296 (33.78%), Postives = 134/296 (45.27%), Query Frame = 1
Query:    1 ATSGVLCVALHREAAARGCEAFRERRAKKSYLAVVQG--------AVDPESVPRREGEPEGWGEGRDGTGXXXXXXXXXXRKRRPDSVQHTPAHGFFQRKKDLLLRAIELGET---------LPPEDLAFSKLSWGDIKFDKAASRPFHSAAKADKIRAIAE-AEAARFQAAQGAPDRGVFRAPGDGEGELR------VDASV---SEVPGDFRMRLDEEAGGKGKPSRTFMKVLEHGSYRGRAVTKVLMRPHTGRRHQLRLHALHMGHPILGDTTYGDVDHTIPRMCLHAQSLTL 807
            ATSGVL V +++EA A GC  FRE++ +K YLAV++G          D E + R   +  G  + +   G              P   +H P    F  ++  LLR   + E          L P +LAF+K++W D+   K     +   AK DK R + E +E    +  + A +R      GD  G          D+ +    E  G FRM +  +     K S T   VL H  Y G  VTKVL+RP  GRRHQLRLH    G PI GD TYG  +   PRM LHA  + L
Sbjct:   90 ATSGVLVVGVNKEATATGCRLFREKQVQKEYLAVIRGHLPFDPAKCTDMEELERFRNQQRGSRKHQKMPGY-------------PRGARHGP--NLFAMEQAQLLRDHHIRENSFIKTQTRALTPTELAFTKMTWHDLT--KEEKDTYLQRAKVDKERFLREFSEFLSQEKIRLAHERKYDSLNGDDRGRCHEPVAYIFDSPILEPHESTGVFRMLVGSKNDIMAKQSTTICFVLGHSMYNGEPVTKVLLRPLNGRRHQLRLHLADHGFPIAGDVTYGSQEDEAPRMMLHAWRIWL 368          
BLAST of mRNA_E_fasciculatus_S2_contig6935.15070.1 vs.
Match: RNA (pseudouridylate synthase n=3 Tax=Phytophthora infestans TaxID=4787 RepID=A0A833WT58_PHYIN)

HSP 1 Score: 114 bits (285), Expect = 1.990e-24
Identity = 112/311 (36.01%), Postives = 145/311 (46.62%), Query Frame = 1
Query:    1 ATSGVLCVALHREAAARGCEAFRERRAKKSYLAVVQGAVD---PESVPRREGEPEGWGEGRDGTGXXXXXXXXXXRKRRPDSVQH--TPA------HG---FFQRKKDLLLRAIE--LGET-----------LPPEDLAFSKLSWGDI-KFDKAASRPFHSAAKADKIRAIAE-AEAARFQAAQGAPDRGVFRAPGDGEGELR------VDASVSEV---PGDFRMRLDEEAGGKGKPSRTFMKVLEHGSYRGRAVTKVLMRPHTGRRHQLRLHALHMGHPILGDTTYGDVDHTIPRMCLHAQSLTLRLAP 819
            ATSGVL V ++++A A GC  FRE++ +K YLAVV+G +     ESV       +     + G            R ++  S  H  TP       HG   F   +  LL ++ E   GE            L P +LAF+K++W D+ K +K A   +   AKADK R + E +E    +  + A  R      G+   E         DA V E     G FRM +  E     K S T   VL H  Y+G  VTKVL+RP  GRRHQLRLH  H G PI GD TYG  +   PRM LHA  + LR  P
Sbjct:  152 ATSGVLVVGVNKDATATGCRLFREKQVQKEYLAVVRGHLPFNPAESVDTAALPAKACTFSKLGLLIQDMEEMERLRNQQRGSRAHQKTPGYPRGVRHGPNLFTMEQAQLLRKSQEHPRGEVRGSSNRAEARELTPAELAFTKMTWHDLTKEEKGA---YTEKAKADKRRFLKEFSEFLNQEKIRLARKRKYESFDGEDSEEANEPVAYVFDAPVIEPHRSTGVFRMLVGTETDTAAKQSTTMCFVLGHAIYKGEPVTKVLLRPLNGRRHQLRLHMAHHGFPIAGDVTYGSQEDEAPRMMLHAWRIWLRGRP 459          
BLAST of mRNA_E_fasciculatus_S2_contig6935.15070.1 vs.
Match: PseudoU_synth_2 (domain-containing protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329SUS2_9STRA)

HSP 1 Score: 112 bits (281), Expect = 4.430e-24
Identity = 106/318 (33.33%), Postives = 138/318 (43.40%), Query Frame = 1
Query:    1 ATSGVLCVALHREAAARGCEAFRERRAKKSYLAVVQG--------AVDPESVPRRE-------------GEPEGWGEGRDGTGXXXXXXXXXXRKRRPDSVQHTPAHGFFQRKKDLLLR---AIELGET-----------LPPEDLAFSKLSWGDIKFDKAASRPFHSAAKADKIRAIAEAEAARFQAAQGAPDRGVFRAPG--DGEGELRVDASVSEVP--------GDFRMRLDEEAGGKGKPSRTFMKVLEHGSYRGRAVTKVLMRPHTGRRHQLRLHALHMGHPILGDTTYGDVDHTIPRMCLHAQSLTLRLAP 819
            ATSGVL V  ++EA A GC  FRE++ +K YLAVV+G        +VD + VP +               E E     + G+               P  V+H P    F  ++  LLR    +  GE            L P +LAF+K++W D+   K     +   AK DK R + E      Q       +  + +    D E      A + + P        G FRM +  E     K S T   VL H  Y+G  VTKVL+RP  GRRHQLRLH  H G PI GD TYG  +   PRM LHA  + LR  P
Sbjct:   95 ATSGVLAVGANKEATATGCRLFREKQVQKEYLAVVRGHLPFNPAESVDSDGVPAKACTFSKLGLLIQDMEEMERLRNQQRGSRAHQKMPGY------PRGVRHGP--NLFTMEQAQLLRESQGVPRGEVRGTSAGAGARELTPAELAFTKMTWHDLT--KEEKDAYTEKAKEDKQRFLQEFSRFLSQEKVLLARKRKYESLDREDSEEANEPVAYIFDAPIIEPHRSTGVFRMLVGTETNTVAKQSTTICFVLGHAMYKGEPVTKVLLRPLNGRRHQLRLHMAHHGFPIAGDVTYGSQEDEAPRMMLHAWRIWLRGRP 402          
BLAST of mRNA_E_fasciculatus_S2_contig6935.15070.1 vs.
Match: PseudoU_synth_2 (domain-containing protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7J597_9STRA)

HSP 1 Score: 109 bits (273), Expect = 2.670e-23
Identity = 105/322 (32.61%), Postives = 140/322 (43.48%), Query Frame = 1
Query:    1 ATSGVLCVALHREAAARGCEAFRERRAKKSYLAVVQGAV----------------------------DPESVPRREGEPEGWGEGRDGTGXXXXXXXXXXRKRRPDSVQHTPAHGFFQRKKDLLLRAIELGET---------------LPPEDLAFSKLSWGDIKFDKAASRPFHSAAKADKIRAIAE-AEAARFQAAQGAPDRGVFRAPGDGEGELRVDASVSEVP--------GDFRMRLDEEAGGKGKPSRTFMKVLEHGSYRGRAVTKVLMRPHTGRRHQLRLHALHMGHPILGDTTYGDVDHTIPRMCLHAQSLTLR 810
            ATSGVL V   +EA A GC  FR++R +K YLAVV+G +                            D E + R + +  G    +   G              P  V+H P    F  ++  LLR  + G+T               L P +LAF+K++W D+   K     +   AK DK R + E AE    +  + A  R  +      E E    A + + P        G FRM++ E+     K S T   VL H +  G+ VTKVL+RP  GRRHQLRLH  H G PI GD TYG  +   PRM LHA  + LR
Sbjct:   32 ATSGVLVVGASKEATATGCRLFRDKRVQKEYLAVVRGHLPFNPADSNAANGEAAKACTFSKLGLLIQDMEEMERLKNQQRGSKAHQKTPGY-------------PRGVRHGP--NLFTMEQAQLLRESQ-GDTRGEMRGTTAGAGARELTPAELAFTKMTWHDLT--KEEKDAYTQKAKVDKQRFLREFAEFLGKEKIKLARKR-KYDCLDREEKEKEPVAYIFDAPIIEPHRSTGMFRMQVGEDQNTSAKMSTTIAFVLGHATCNGQPVTKVLLRPLNGRRHQLRLHLAHHGFPIAGDVTYGSQEDDAPRMMLHAWRIWLR 334          
BLAST of mRNA_E_fasciculatus_S2_contig6935.15070.1 vs.
Match: Hypothetical (protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GNM4_9STRA)

HSP 1 Score: 102 bits (255), Expect = 3.360e-23
Identity = 61/105 (58.10%), Postives = 69/105 (65.71%), Query Frame = 1
Query:  544 VPGDFRMRLDEEAGGKGKPSRTFMKVLEHGSYRGRAVTKVLMRPHTGRRHQLRLHALHMGHPILGDTTYG---------DVDHTIPRMCLHAQSLTL----RLAP 819
            VPGDFRMR      G GKPSRT ++V+ HG Y+G+ VTKV++ P TGRRHQLRLH L  GHPILGD TYG         +VD   PRMCLHA  L L    RLAP
Sbjct:    1 VPGDFRMRTV-HGSGVGKPSRTEVRVVAHGLYQGQPVTKVVLHPITGRRHQLRLHLLEAGHPILGDATYGPAACPSDLGEVDEP-PRMCLHAHRLYLPFKHRLAP 103          
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig6935.15070.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
PseudoU_synth_29.200e-18395.52domain-containing protein n=2 Tax=Ectocarpus TaxID... [more]
PseudoU_synth_23.140e-2634.62domain-containing protein n=4 Tax=Phytophthora par... [more]
RNA1.770e-2534.62pseudouridylate synthase domain-containing protein... [more]
PseudoU_synth_22.070e-2534.62domain-containing protein n=16 Tax=Phytophthora Ta... [more]
Uncharacterized4.100e-2533.88protein n=1 Tax=Pythium oligandrum TaxID=41045 Rep... [more]
Rna5.840e-2533.78pseudouridylate synthase-like protein n=1 Tax=Plas... [more]
RNA1.990e-2436.01pseudouridylate synthase n=3 Tax=Phytophthora infe... [more]
PseudoU_synth_24.430e-2433.33domain-containing protein n=2 Tax=Phytophthora Tax... [more]
PseudoU_synth_22.670e-2332.61domain-containing protein n=3 Tax=Phytophthora ker... [more]
Hypothetical3.360e-2358.10protein n=1 Tax=Dictyocha speculum TaxID=35687 Rep... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig6935contigE_fasciculatus_S2_contig6935:438..2939 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score122.1
Seed ortholog evalue5.3e-25
Seed eggNOG ortholog4787.PITG_13146T0
Preferred nameRPUSD1
Model size1081
Hectar predicted targeting categoryother localisation
GOsGO:0000154,GO:0000455,GO:0001522,GO:0003674,GO:0003824,GO:0006139,GO:0006364,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009982,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016853,GO:0016866,GO:0022613,GO:0031118,GO:0031119,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043412,GO:0044085,GO:0044237,GO:0044238,GO:0046483,GO:0071704,GO:0071840,GO:0090304,GO:1901360
Exons3
EggNOG free text desc.RNA pseudouridylate synthase
EggNOG OGs3QEVP@4776,COG0564@1,KOG1919@2759
Cds size1080
COG Functional cat.A
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842350.5810375-CDS-E_fasciculatus_S2_contig6935:437..7161696842350.5810375-CDS-E_fasciculatus_S2_contig6935:437..716Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig6935 438..716 +
1696842350.5936568-CDS-E_fasciculatus_S2_contig6935:1650..20421696842350.5936568-CDS-E_fasciculatus_S2_contig6935:1650..2042Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig6935 1651..2042 +
1696842350.6036644-CDS-E_fasciculatus_S2_contig6935:2529..29381696842350.6036644-CDS-E_fasciculatus_S2_contig6935:2529..2938Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig6935 2530..2938 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig6935.15070.1prot_E_fasciculatus_S2_contig6935.15070.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig6935 438..2938 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig6935.15070.1

>prot_E_fasciculatus_S2_contig6935.15070.1 ID=prot_E_fasciculatus_S2_contig6935.15070.1|Name=mRNA_E_fasciculatus_S2_contig6935.15070.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=360bp
ATSGVLCVALHREAAARGCEAFRERRAKKSYLAVVQGAVDPESVPRREGE
PEGWGEGRDGTGGGGGGGGGGGRKRRPDSVQHTPAHGFFQRKKDLLLRAI
ELGETLPPEDLAFSKLSWGDIKFDKAASRPFHSAAKADKIRAIAEAEAAR
FQAAQGAPDRGVFRAPGDGEGELRVDASVSEVPGDFRMRLDEEAGGKGKP
SRTFMKVLEHGSYRGRAVTKVLMRPHTGRRHQLRLHALHMGHPILGDTTY
GDVDHTIPRMCLHAQSLTLRLAPPSDAACSDTEAPAKQEAESGGAAESTA
AAPAVSTEGAGSQGGGGGSRQAVLGPAGGAAGESSGREAGGDLGRCCARP
VRVCGRRAAV
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mRNA from alignment at E_fasciculatus_S2_contig6935:438..2939+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig6935.15070.1 ID=mRNA_E_fasciculatus_S2_contig6935.15070.1|Name=mRNA_E_fasciculatus_S2_contig6935.15070.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=2502bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig6935:438..2939+ (Ectocarpus fasciculatus EfasUO2)
GCGACATCAGGGGTGTTGTGCGTCGCGCTCCACCGAGAAGCGGCGGCACG TGGCTGCGAGGCGTTCCGAGAGCGCCGGGCGAAAAAGTCGTACCTCGCGG TGGTCCAGGGAGCGGTCGACCCGGAATCTGTCCCACGGCGGGAGGGGGAG CCGGAGGGGTGGGGGGAGGGGAGAGATGGCACCGGCGGCGGGGGCGGGGG CGGGGGAGGGGGCGGGCGGAAGCGAAGGCCGGACTCGGTGCAGCACACTC CGGCCCATGGGTTCTTCCAGCGGAAAAAGGTGAGAGCGGTGTAGGCTACA CGTGCGTCGTGCGGCATGTACCCAATAGTCCACGCAAGTTTTTTTTTAAG TAGGCAAACGAATTGGATAAGGTTATAATCGGCTAGATTGGGGCTTGGGT CTGCGTACCCCCTGCCTGGCCTTTTTTCTCAATAAACATACTTTCTTTGC GTGGGCAGTACCAAATACCATGGTGGTTGTTCTGGGTCAGCAGCGAAGGC GTGGGGCTACGGTACACTCTGGCACCGACGTTGATGGGGAAGTTGAAGGC TTGAAGAAGCCAGGAGCGAAGGGGTGTCTGAGGGATCATCGCCCGCCTCC AATGAGGAGAGGGATCGTGGGAGGGATGGCGTTTTTGCCCCCGCGTCATG GTGGCCGTCAAGCGGGAGATGGGCTCTTGGTCTTCTCTTTTTCTTTTGTT GGTGCGCCGAACGGTGTGGCATTTCTGTTTGCAGTGGTTTCAACACCAGT GGCGCGATGATGGAGCGGGATCAAAGTCGAGCGCTACATGAAACATTGTT CTCTCTGCTGTCCGAATGCACGGTTTTGGTATTCTTCTTCTCTGTGTGTC GAGCTACGCCAACGCTGTACCGCCCGTACGCACCGTCGTCAGTGTTCCTT GTGTGTTGAGCTATTTAGCGCTAGATGTCGCCTGGCTCAGGTTTTTCGAG CGTGCGCCGACGGCTTTCGTCCACCTTTTGTACGGTTCCACTCTGACCTT GTGCTGGTGTGAGACATGGCGTGTACGAGGTATCAGGTGATCATCGATGA AAAAACCAGGGTGTGATCGCCCACGTTTGAGTGTCTGCCGTTGTGTACAA CATGCCGCTTAAGTACAACATGCAAGCTTGCGTACGACATCCAAGCTTGT GTGCAACATCCAAGCTTGTATACAACGTCCAATAATCGCTTGTCCTTTTC GCAACAAAAATAGGACCTTCTCCTGAGGGCCATCGAGCTCGGCGAAACTT TGCCCCCGGAAGACCTGGCTTTCTCCAAGCTAAGCTGGGGGGACATCAAG TTCGACAAGGCCGCCTCGCGGCCGTTCCACTCCGCGGCAAAGGCTGACAA GATTCGCGCCATTGCGGAAGCGGAGGCGGCGAGGTTCCAGGCGGCCCAGG GCGCACCGGACCGTGGAGTGTTCCGCGCGCCCGGTGATGGTGAGGGGGAG CTTCGCGTGGATGCATCAGTGTCCGAGGTGCCGGGCGACTTCCGCATGCG GTTGGACGAAGAGGCCGGGGGCAAGGGCAAGCCGTCGAGGACGTTCATGA AGGTGCTGGAGCACGGGTCGTACCGGGGGCGGGCAGTGACGAAGGTCTTG ATGAGGTGAGGGGCGCTTTTTGGGGCCAGCTTCGACAGGTGTGGGAGAAG CAGTAAATAGTATCTCGCCTGCTTTTTGCTGGTTTCTTTGCCCTGGTTGT GGTCATCATGTCCTTGTGATGGTTGTTGATTGTGAGAGATCGAAACACAA ATGTTATATTGTAGACATAACCACCCGGTGGCGGCACCACCCGTCGGTAG TACGACAATGTGGAACCGACGTGGCTCCGATATAAGAGGGCGTTCCGATA CGTAAGAAGGTCGAAATCGGTCGTCACGGACTCGATCCAATAGTTGGGTT CCCTCTTTTTCCGGTAGAAAAAGGGGGGTCCGATATAAGAGGGTGTAGGG TCTTTGTCACACCACACCACCCTCTTACATCTATCGGAGCAACGACTGTA CGTTTTGCTCTGTGCTGACTTTTACTTCGTCTTGGCGCGATGTCGTGTTT ACCTTTGCTCCCTGGGTCCCGCCTCCTCCACTCCACAACCAGGCCGCATA CCGGGCGGCGACACCAGCTTCGGCTTCACGCCTTGCACATGGGGCACCCC ATCCTTGGTGACACCACGTACGGGGACGTCGACCACACCATCCCCAGAAT GTGTCTGCACGCGCAGTCTTTGACGCTGCGGCTTGCTCCCCCTTCCGACG CCGCTTGTTCTGACACCGAGGCGCCGGCGAAACAAGAGGCCGAGAGTGGA GGTGCCGCTGAGTCGACGGCGGCGGCGCCGGCGGTGTCAACGGAAGGAGC GGGTTCGCAGGGAGGGGGGGGGGGGTCGCGGCAAGCGGTACTGGGGCCGG CAGGAGGTGCAGCCGGCGAGAGTAGCGGGCGGGAAGCAGGAGGTGATCTT GGACGTTGTTGCGCCCGACCCGTTCGTGTTTGTGGACGGAGAGCTGCAGT TG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig6935:438..2939+

>mRNA_E_fasciculatus_S2_contig6935.15070.1 ID=mRNA_E_fasciculatus_S2_contig6935.15070.1|Name=mRNA_E_fasciculatus_S2_contig6935.15070.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=1080bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig6935:438..2939+ (Ectocarpus fasciculatus EfasUO2)
GCGACATCAGGGGTGTTGTGCGTCGCGCTCCACCGAGAAGCGGCGGCACG
TGGCTGCGAGGCGTTCCGAGAGCGCCGGGCGAAAAAGTCGTACCTCGCGG
TGGTCCAGGGAGCGGTCGACCCGGAATCTGTCCCACGGCGGGAGGGGGAG
CCGGAGGGGTGGGGGGAGGGGAGAGATGGCACCGGCGGCGGGGGCGGGGG
CGGGGGAGGGGGCGGGCGGAAGCGAAGGCCGGACTCGGTGCAGCACACTC
CGGCCCATGGGTTCTTCCAGCGGAAAAAGGACCTTCTCCTGAGGGCCATC
GAGCTCGGCGAAACTTTGCCCCCGGAAGACCTGGCTTTCTCCAAGCTAAG
CTGGGGGGACATCAAGTTCGACAAGGCCGCCTCGCGGCCGTTCCACTCCG
CGGCAAAGGCTGACAAGATTCGCGCCATTGCGGAAGCGGAGGCGGCGAGG
TTCCAGGCGGCCCAGGGCGCACCGGACCGTGGAGTGTTCCGCGCGCCCGG
TGATGGTGAGGGGGAGCTTCGCGTGGATGCATCAGTGTCCGAGGTGCCGG
GCGACTTCCGCATGCGGTTGGACGAAGAGGCCGGGGGCAAGGGCAAGCCG
TCGAGGACGTTCATGAAGGTGCTGGAGCACGGGTCGTACCGGGGGCGGGC
AGTGACGAAGGTCTTGATGAGGCCGCATACCGGGCGGCGACACCAGCTTC
GGCTTCACGCCTTGCACATGGGGCACCCCATCCTTGGTGACACCACGTAC
GGGGACGTCGACCACACCATCCCCAGAATGTGTCTGCACGCGCAGTCTTT
GACGCTGCGGCTTGCTCCCCCTTCCGACGCCGCTTGTTCTGACACCGAGG
CGCCGGCGAAACAAGAGGCCGAGAGTGGAGGTGCCGCTGAGTCGACGGCG
GCGGCGCCGGCGGTGTCAACGGAAGGAGCGGGTTCGCAGGGAGGGGGGGG
GGGGTCGCGGCAAGCGGTACTGGGGCCGGCAGGAGGTGCAGCCGGCGAGA
GTAGCGGGCGGGAAGCAGGAGGTGATCTTGGACGTTGTTGCGCCCGACCC
GTTCGTGTTTGTGGACGGAGAGCTGCAGTT
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