mRNA_E_fasciculatus_S2_contig6931.15068.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig6931.15068.1
Unique NamemRNA_E_fasciculatus_S2_contig6931.15068.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig6931.15068.1 vs.
Match: CMGC (family protein kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHE8_ECTSI)

HSP 1 Score: 210 bits (535), Expect = 6.930e-67
Identity = 99/107 (92.52%), Postives = 103/107 (96.26%), Query Frame = 1 
Query:    1 RYGFAVDVWAAGAVLGEMLASRPLFPGRSDIDQLHKILQVTGSPTDESWPGAKDLPDYDKVCFAEMPPQDASVVFQGSSREACDLAQGMLRLDPRDRTPALKALQHR 321
            RYGFAVD+WAAGAV+GEMLA RPLFPGRSDIDQL+KILQVTGSPTDESWPG KDLPDYDKVCFAEMPPQDASV FQGSSREACDL QGMLRLDPR+RTPALKALQHR
Sbjct:  136 RYGFAVDMWAAGAVVGEMLAGRPLFPGRSDIDQLYKILQVTGSPTDESWPGVKDLPDYDKVCFAEMPPQDASVTFQGSSREACDLTQGMLRLDPRNRTPALKALQHR 242
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BLAST of mRNA_E_fasciculatus_S2_contig6931.15068.1 vs.
Match: Protein (kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHL5_9PHAE)

HSP 1 Score: 201 bits (510), Expect = 3.290e-61
Identity = 95/107 (88.79%), Postives = 101/107 (94.39%), Query Frame = 1 
Query:    1 RYGFAVDVWAAGAVLGEMLASRPLFPGRSDIDQLHKILQVTGSPTDESWPGAKDLPDYDKVCFAEMPPQDASVVFQGSSREACDLAQGMLRLDPRDRTPALKALQHR 321
            RYG AVD+WAAGAV+GEMLASRPLFPGRSDIDQL+KILQVTGSPTDE+WPG K LPDYDKVCFAEMPPQDASV FQGSSREAC L QGMLRLDPR+RTPAL+ALQHR
Sbjct:  299 RYGCAVDMWAAGAVVGEMLASRPLFPGRSDIDQLYKILQVTGSPTDENWPGVKGLPDYDKVCFAEMPPQDASVTFQGSSREACHLTQGMLRLDPRNRTPALEALQHR 405
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BLAST of mRNA_E_fasciculatus_S2_contig6931.15068.1 vs.
Match: Cyclin-dependent (kinase 20-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXT6_9STRA)

HSP 1 Score: 116 bits (291), Expect = 6.190e-29
Identity = 56/106 (52.83%), Postives = 72/106 (67.92%), Query Frame = 1 
Query:    1 RYGFAVDVWAAGAVLGEMLASRPLFPGRSDIDQLHKILQVTGSPTDESWPGAKDLPDYDKVCFAEMPPQDASVVFQGSSREACDLAQGMLRLDPRDRTPALKALQH 318
            RY  AVD WAAG VL E+L ++PLFPG+SDIDQL ++L+VTG+PT  +WPGA + PD+DK+ FA M P   + +  GSS +A  L   +L LDP  R  A  AL H
Sbjct:  220 RYTAAVDAWAAGCVLAELLFNKPLFPGQSDIDQLIRVLRVTGTPTAATWPGACETPDFDKIAFAHMEPAPLAALCPGSSAQAMGLLAALLTLDPLRRATAADALCH 325
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BLAST of mRNA_E_fasciculatus_S2_contig6931.15068.1 vs.
Match: Uncharacterized (protein CDKF-1 n=2 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8R9R5_SELML)

HSP 1 Score: 107 bits (267), Expect = 3.370e-25
Identity = 50/106 (47.17%), Postives = 67/106 (63.21%), Query Frame = 1 
Query:    4 YGFAVDVWAAGAVLGEMLASRPLFPGRSDIDQLHKILQVTGSPTDESWPGAKDLPDYDKVCFAE-MPPQDASVVFQGSSREACDLAQGMLRLDPRDRTPALKALQH 318
            Y FAVD+WA G +LGE++   PLFPG SDIDQL ++++V G P +  WPG   LPDYDK+CF +  PP   + +   +S EA  L + +L  DP  R  A +AL H
Sbjct:  332 YNFAVDLWAVGCILGELIQGEPLFPGASDIDQLSRVVRVLGVPNETIWPGISSLPDYDKICFNDDRPPVTLARILPRASGEALRLIEKLLVYDPASRLSASQALSH 437
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BLAST of mRNA_E_fasciculatus_S2_contig6931.15068.1 vs.
Match: cyclin-dependent (kinase 20-like n=1 Tax=Portunus trituberculatus TaxID=210409 RepID=UPI001E1CD309)

HSP 1 Score: 105 bits (262), Expect = 4.480e-25
Identity = 51/106 (48.11%), Postives = 67/106 (63.21%), Query Frame = 1 
Query:    1 RYGFAVDVWAAGAVLGEMLASRPLFPGRSDIDQLHKILQVTGSPTDESWPGAKDLPDYDKVCFAEMPPQDASVVFQGSSREACDLAQGMLRLDPRDRTPALKALQH 318
            +Y   VD+WA G +  EM+ + PLFPG SDIDQL  +LQV G+P++ SWPG   LPDY K+ F E  P   S V   +S++A DL +  L   P  R PA++ALQH
Sbjct:  179 QYREGVDLWAVGCIFAEMINNCPLFPGESDIDQLCVVLQVLGTPSEASWPGLAQLPDYRKITFPECQPIPLSQVLPEASQDALDLVKKFLIYCPEKRLPAVQALQH 284
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BLAST of mRNA_E_fasciculatus_S2_contig6931.15068.1 vs.
Match: Cell (cycle related kinase isoform 1 n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6N122_9EUKA)

HSP 1 Score: 106 bits (264), Expect = 5.010e-25
Identity = 48/106 (45.28%), Postives = 65/106 (61.32%), Query Frame = 1 
Query:    1 RYGFAVDVWAAGAVLGEMLASRPLFPGRSDIDQLHKILQVTGSPTDESWPGAKDLPDYDKVCFAEMPPQDASVVFQGSSREACDLAQGMLRLDPRDRTPALKALQH 318
            RYGF+ D+W+ G + GEM  S PLF G SDIDQLH+I+QV G+PT+++WPG  DLPDY K+ F        + +       A  L   +L LDP  R  A +A++H
Sbjct:  197 RYGFSTDIWSVGCIFGEMFLSTPLFRGESDIDQLHRIIQVLGTPTEDNWPGVSDLPDYHKINFQHTERVPWAKLLPDVPERAVSLLSQLLALDPAKRISADEAMRH 302
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BLAST of mRNA_E_fasciculatus_S2_contig6931.15068.1 vs.
Match: cyclin-dependent (kinase 20-like n=1 Tax=Anneissia japonica TaxID=1529436 RepID=UPI0014255D22)

HSP 1 Score: 105 bits (261), Expect = 6.650e-25
Identity = 47/106 (44.34%), Postives = 68/106 (64.15%), Query Frame = 1 
Query:    1 RYGFAVDVWAAGAVLGEMLASRPLFPGRSDIDQLHKILQVTGSPTDESWPGAKDLPDYDKVCFAEMPPQDASVVFQGSSREACDLAQGMLRLDPRDRTPALKALQH 318
            +Y   VD+WA G + GE+L + PLFPG +DI+QL  +L+V G+PT+E+WPG KDLPDY+K+ F E PP     +   +++EA DL +  L    + R  A + L H
Sbjct:  180 KYDEGVDLWAVGCIFGELLNNSPLFPGENDIEQLCCVLRVLGTPTEETWPGMKDLPDYNKITFPENPPIPLEEIVPDAAKEALDLLKSFLVYPSKQRISAAEGLLH 285
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BLAST of mRNA_E_fasciculatus_S2_contig6931.15068.1 vs.
Match: cyclin-dependent (kinase 20-like n=1 Tax=Diaphorina citri TaxID=121845 RepID=A0A3Q0IN03_DIACI)

HSP 1 Score: 102 bits (253), Expect = 6.660e-25
Identity = 47/99 (47.47%), Postives = 63/99 (63.64%), Query Frame = 1 
Query:    4 YGFAVDVWAAGAVLGEMLASRPLFPGRSDIDQLHKILQVTGSPTDESWPGAKDLPDYDKVCFAEMPPQDASVVFQGSSREACDLAQGMLRLDPRDRTPA 300
            Y  +VD+WA G +LGEM  + PLFPG SDI+QL  +L   G+PT++SWPG KDLPDY+K+ FA   P   S +   +S +  DL   +L  D + R PA
Sbjct:   98 YDQSVDLWAVGCILGEMYTNAPLFPGESDIEQLAMVLHKLGTPTEDSWPGLKDLPDYNKITFAPSDPVPWSTMLPNASPDTLDLISKLLLYDGQKRLPA 196
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BLAST of mRNA_E_fasciculatus_S2_contig6931.15068.1 vs.
Match: Cyclin-dependent (kinase 20 n=3 Tax=Cacopsylla melanoneura TaxID=428564 RepID=A0A8D8VML3_9HEMI)

HSP 1 Score: 103 bits (258), Expect = 1.710e-24
Identity = 48/106 (45.28%), Postives = 67/106 (63.21%), Query Frame = 1 
Query:    4 YGFAVDVWAAGAVLGEMLASRPLFPGRSDIDQLHKILQVTGSPTDESWPGAKDLPDYDKVCFAEMPPQDASVVFQGSSREACDLAQGMLRLDPRDRTPALKALQHR 321
            Y  +VD+WA G +LGE+    PLFPG SDI+QL  +L   G+PT++SWPG K+LPDY+K+ FA   P   S +   +S +  DL   +L  D + R PA +AL H+
Sbjct:  186 YDQSVDLWAVGCILGELHNREPLFPGESDIEQLAMVLHKLGTPTEDSWPGLKELPDYNKITFAPSDPVSFSTMLPNASHDTIDLISKLLLYDGQKRIPANEALLHK 291
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BLAST of mRNA_E_fasciculatus_S2_contig6931.15068.1 vs.
Match: Cyclin-dependent (kinase 20 n=2 Tax=Schistocephalus solidus TaxID=70667 RepID=A0A0X3Q8T9_SCHSO)

HSP 1 Score: 101 bits (252), Expect = 4.350e-24
Identity = 48/106 (45.28%), Postives = 67/106 (63.21%), Query Frame = 1 
Query:    1 RYGFAVDVWAAGAVLGEMLASRPLFPGRSDIDQLHKILQVTGSPTDESWPGAKDLPDYDKVCFAEMPPQDASVVFQGSSREACDLAQGMLRLDPRDRTPALKALQH 318
             Y  +VD+W+ GA+ GEML + PLFPG +DI+QL  +++V G+PT+ESWPG ++LPDY+K+ F    P     V   +S  A DL +  L  +P  R  A KAL H
Sbjct:   97 NYSLSVDLWSVGAIFGEMLNNSPLFPGENDIEQLWFVIRVLGTPTEESWPGLRNLPDYNKISFTNCKPVAFEDVILEASPLALDLLKKFLCYEPSRRVMAEKALMH 202
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig6931.15068.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
CMGC6.930e-6792.52family protein kinase n=1 Tax=Ectocarpus siliculos... [more]
Protein3.290e-6188.79kinase domain-containing protein n=1 Tax=Ectocarpu... [more]
Cyclin-dependent6.190e-2952.83kinase 20-like protein n=1 Tax=Tribonema minus Tax... [more]
Uncharacterized3.370e-2547.17protein CDKF-1 n=2 Tax=Selaginella moellendorffii ... [more]
cyclin-dependent4.480e-2548.11kinase 20-like n=1 Tax=Portunus trituberculatus Ta... [more]
Cell5.010e-2545.28cycle related kinase isoform 1 n=1 Tax=Planoprotos... [more]
cyclin-dependent6.650e-2544.34kinase 20-like n=1 Tax=Anneissia japonica TaxID=15... [more]
cyclin-dependent6.660e-2547.47kinase 20-like n=1 Tax=Diaphorina citri TaxID=1218... [more]
Cyclin-dependent1.710e-2445.28kinase 20 n=3 Tax=Cacopsylla melanoneura TaxID=428... [more]
Cyclin-dependent4.350e-2445.28kinase 20 n=2 Tax=Schistocephalus solidus TaxID=70... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig6931contigE_fasciculatus_S2_contig6931:99..1856 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score210.7
Seed ortholog evalue3.4e-52
Seed eggNOG ortholog2880.D8LHE8
Preferred nameCDK20
Model size321
KEGG koko:K08817,ko:K10267,ko:K18086
KEGG Pathwayko00562,ko01100,ko04070,ko04140,map00562,map01100,map04070,map04140
Hectar predicted targeting categoryother localisation
GOsGO:0001932,GO:0001934,GO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0004693,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0006996,GO:0008047,GO:0008150,GO:0008152,GO:0009893,GO:0009987,GO:0010562,GO:0010604,GO:0016043,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019207,GO:0019209,GO:0019220,GO:0019222,GO:0019538,GO:0019887,GO:0019912,GO:0022607,GO:0030030,GO:0030031,GO:0030234,GO:0030295,GO:0031323,GO:0031325,GO:0031399,GO:0031401,GO:0031974,GO:0031981,GO:0032147,GO:0032268,GO:0032270,GO:0033674,GO:0036211,GO:0042325,GO:0042327,GO:0043085,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043549,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0044782,GO:0045859,GO:0045860,GO:0045937,GO:0048518,GO:0048522,GO:0050789,GO:0050790,GO:0050794,GO:0051171,GO:0051173,GO:0051174,GO:0051246,GO:0051247,GO:0051338,GO:0051347,GO:0051726,GO:0060255,GO:0060271,GO:0065007,GO:0065009,GO:0070013,GO:0070925,GO:0071704,GO:0071840,GO:0080090,GO:0097472,GO:0098772,GO:0120031,GO:0120036,GO:0140096,GO:1901564,GO:1904029,GO:1904031
Exons3
EggNOG free text desc.Belongs to the protein kinase superfamily
EggNOG OGsKOG0659@1,KOG0659@2759
Ec32 ortholog descriptionCMGC family protein kinase
Ec32 orthologEc-13_000360.1
EC2.7.11.22,3.1.3.64,3.1.3.95
Cds size321
COG Functional cat.H
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01001,ko01009,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842350.4329643-CDS-E_fasciculatus_S2_contig6931:98..2151696842350.4329643-CDS-E_fasciculatus_S2_contig6931:98..215Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig6931 99..215 +
1696842350.448579-CDS-E_fasciculatus_S2_contig6931:633..6961696842350.448579-CDS-E_fasciculatus_S2_contig6931:633..696Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig6931 634..696 +
1696842350.458407-CDS-E_fasciculatus_S2_contig6931:1715..18561696842350.458407-CDS-E_fasciculatus_S2_contig6931:1715..1856Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig6931 1716..1856 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig6931.15068.1prot_E_fasciculatus_S2_contig6931.15068.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig6931 99..1856 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig6931.15068.1

>prot_E_fasciculatus_S2_contig6931.15068.1 ID=prot_E_fasciculatus_S2_contig6931.15068.1|Name=mRNA_E_fasciculatus_S2_contig6931.15068.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=107bp
RYGFAVDVWAAGAVLGEMLASRPLFPGRSDIDQLHKILQVTGSPTDESWP
GAKDLPDYDKVCFAEMPPQDASVVFQGSSREACDLAQGMLRLDPRDRTPA
LKALQHR
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mRNA from alignment at E_fasciculatus_S2_contig6931:99..1856+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig6931.15068.1 ID=mRNA_E_fasciculatus_S2_contig6931.15068.1|Name=mRNA_E_fasciculatus_S2_contig6931.15068.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1758bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig6931:99..1856+ (Ectocarpus fasciculatus EfasUO2)
AGGTACGGGTTTGCTGTGGACGTGTGGGCGGCCGGGGCGGTGCTAGGAGA
GATGCTGGCGAGCCGACCTTTGTTTCCGGGCAGGAGCGACATCGACCAAC
TCCACAAGATTCTCCAGGTGACGGTTTCGTTTCCATCACCGCTAGGTTGC
TACATTGTGTACCGTAGGTGATACAAGATACAATACGACACCATCATCAC
AGACATAGCAAGCTACACATGTGGGAGATAATAGTACTACTACAAGTTGG
GTGTGTGTATTGTTCGGCACTGTGTGGCTTTAGTTTGTTGGTTTTGGGGA
CGCAATACAAGCAATGCCGGCCAGCACATGTATTTTTCGCCTGCATTATG
CAATGTCGATGTTCGTTCGTGGGGCACATGAAGGACAACAGGAAGAATAA
TAATTTATGTACATACGCGAAAATCGCATGCACAGCTTTGTTTTTTGTTG
TGGGTATTTTTTAATTTTCAGTTTCGGGGACGCAAAACCAACGAATTCAT
CTACATGGTACGATGTTTTTTGTTTTTCATGTCAGGTGACGGGGAGCCCA
ACGGACGAATCCTGGCCGGGAGCGAAAGACCTTCCAGACTACGACAAGGT
GAGACGGCGACGCTGCTGCGGTTTTTGTTGCCACCGCCCGTACTGGTTGG
CTGTCGTCATTTGTCTCTCGTAAACCCAACAGTATTGCTTAAATTGTCTC
TTTACTGTTATCATGTTTTTCTCGTAAATCCAACAGTTTTTCTTAAATTG
TCTCTTTCATTGCCGTAGTCGTGTTTTTCTCGTATACCCAACAGTTCTTA
TTTTGCCTCTTTTGCGGTAGTCGTGTTTTCCCCGTAAACCCAACAGTTTC
TTAGATTGTCTCTTTGACTCTCGTAAACCCATCAGTTTCTCTTATATTGT
CGCTTTGACTGTCGTGTTTTCCTCCTAAATCCAACGGTTTTTCTTAATTT
CTCTCTTTTACTGTGGTGTTTTCCCCGTAAACCCAACAGTTTCTTAGATT
GTCTCTTTTGACTCTCGTAAACCCATCAGTTTCTCTTATATTGTCGCTTT
GACTGTCGTGTTTTCCTCGTAAATCCAACGGTTTTTCTTAATTTCTCTCT
TTTACTGTGGTGTTTCCCTCGTAAACCCAACAATATTTCTTAAATTGTCT
CTTTTATTACCGTTGTCGTGTTTCGCTCATAAACCGAACGGTTTGTCTTA
AGTTGTCTCTCGTACGCGGGTGCTAGTCGTCTGCAGCTGTGCATTCTCCG
GGCATTGCTGCAACGCCAAGACCTTTTTTCTTCTCTTCTACGCCCTACTA
CAACAGTAGTCGTCAAATTTGGTTTCTCCGTACGGTTCACCACTTGGTTT
ATAACCCACTACGCCGTAGCCGCTAGTTCTATTTTAAAGTCGTCGCATAC
ATCTGATTTCTTCGGGCGGTGCCTCAACGCCGAAACGTCTGCTTAGCGGA
AATGCCGCCCGAAGACGACTCGGTCGTTTTCCAACCAAAATCATTCCCCA
AAACAAAAACAATTAAATTAAAAAAACAGCTTCTCTTTTATACAGTAGGG
GCACTAGTCGTCTAAATCTGATTTATGCGGGCGGTGCTGCAATGCCTTTG
TTTTGTTGATATAAAAGGTCTGCTTCGCGGAGATGCCGCCCCAAGACGCC
TCGGTGGTTTTCCAGGGGTCGTCCCGGGAGGCGTGCGACCTTGCCCAGGG
GATGCTTCGCTTGGATCCCCGCGATCGGACGCCTGCTCTGAAGGCCCTCC
AGCACAGG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig6931:99..1856+

>mRNA_E_fasciculatus_S2_contig6931.15068.1 ID=mRNA_E_fasciculatus_S2_contig6931.15068.1|Name=mRNA_E_fasciculatus_S2_contig6931.15068.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=321bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig6931:99..1856+ (Ectocarpus fasciculatus EfasUO2)
AGGTACGGGTTTGCTGTGGACGTGTGGGCGGCCGGGGCGGTGCTAGGAGA
GATGCTGGCGAGCCGACCTTTGTTTCCGGGCAGGAGCGACATCGACCAAC
TCCACAAGATTCTCCAGGTGACGGGGAGCCCAACGGACGAATCCTGGCCG
GGAGCGAAAGACCTTCCAGACTACGACAAGGTCTGCTTCGCGGAGATGCC
GCCCCAAGACGCCTCGGTGGTTTTCCAGGGGTCGTCCCGGGAGGCGTGCG
ACCTTGCCCAGGGGATGCTTCGCTTGGATCCCCGCGATCGGACGCCTGCT
CTGAAGGCCCTCCAGCACAGG
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