mRNA_E_fasciculatus_S2_contig6927.15063.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_E_fasciculatus_S2_contig6927.15063.1
Unique Name	mRNA_E_fasciculatus_S2_contig6927.15063.1
Type	mRNA
Organism	Ectocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)

Homology

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BLAST of mRNA_E_fasciculatus_S2_contig6927.15063.1 vs.
Match: Uncharacterized (protein n=7 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCQ0_9PHAE)

HSP 1 Score: 148 bits (374), Expect = 5.540e-42
Identity = 70/86 (81.40%), Postives = 75/86 (87.21%), Query Frame = -1

Query:    1 GKIEGRYREMFEAWNRKDKIVAVLGHTKWVETAGSDIGRIGRLGKTFLSHLWQSRKERLAIGDRSCGNNASSSRGCVVNGLTTKAC 258
            GKI+G YREMFEAWNR+++ VAVLGH +WVE AG DI RI RLGKTFLSHLWQSRKERLAIGDRSCGNNA SSRG VVNGLT K C
Sbjct:  176 GKIDGTYREMFEAWNREERTVAVLGHRRWVEKAGRDIVRIDRLGKTFLSHLWQSRKERLAIGDRSCGNNAPSSRGRVVNGLTAKTC 261

[Close]

BLAST of mRNA_E_fasciculatus_S2_contig6927.15063.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMG6_9PHAE)

HSP 1 Score: 150 bits (380), Expect = 7.410e-42
Identity = 70/86 (81.40%), Postives = 76/86 (88.37%), Query Frame = -1

Query:    1 GKIEGRYREMFEAWNRKDKIVAVLGHTKWVETAGSDIGRIGRLGKTFLSHLWQSRKERLAIGDRSCGNNASSSRGCVVNGLTTKAC 258
            GKI+G YREMFEAWNR+++ VAV+GH +WVE AG DI RI RLGKTFLSHLWQSRKERLAIGDRSCGNNA SS GCVVNGLT KAC
Sbjct:  274 GKIDGTYREMFEAWNREERTVAVVGHRRWVEKAGRDIVRIDRLGKTFLSHLWQSRKERLAIGDRSCGNNAPSSGGCVVNGLTAKAC 359

[Close]

BLAST of mRNA_E_fasciculatus_S2_contig6927.15063.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJX4_9PHAE)

HSP 1 Score: 144 bits (363), Expect = 1.840e-41
Identity = 72/108 (66.67%), Postives = 80/108 (74.07%), Query Frame = -1

Query:    1 RAIKLSTTPW----RDCT*LSWGKIEGRYREMFEAWNRKDKIVAVLGHTKWVETAGSDIGRIGRLGKTFLSHLWQSRKERLAIGDRSCGNNASSSRGCVVNGLTTKAC 312
            R   ++  PW    R+       KI+G YREMFEAWNR+++ VAVLGH +WVE AG  I RI RLGKTFLSHLWQSRKERLA GDRSCGNNA SSRG VVNGLT KAC
Sbjct:   61 RVHVVAERPWYKKEREVYVTELEKIDGTYREMFEAWNREERTVAVLGHRRWVEKAGRGIVRIDRLGKTFLSHLWQSRKERLAFGDRSCGNNAPSSRGRVVNGLTAKAC 168

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BLAST of mRNA_E_fasciculatus_S2_contig6927.15063.1 vs.
Match: Reverse (transcriptase domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4L1_9PHAE)

HSP 1 Score: 154 bits (390), Expect = 3.710e-41
Identity = 73/94 (77.66%), Postives = 79/94 (84.04%), Query Frame = -1

Query:    1 RDCT*LSWGKIEGRYREMFEAWNRKDKIVAVLGHTKWVETAGSDIGRIGRLGKTFLSHLWQSRKERLAIGDRSCGNNASSSRGCVVNGLTTKAC 282
            R+     WGKI+G YREMFEAWNR+++ VAVLGH +WVE AG DI RI RLGKTFLSHLWQSRKERLAIGDRSCGNNA SSRG VVNGLT KAC
Sbjct:  688 REVYVTGWGKIDGTYREMFEAWNREERTVAVLGHRRWVEKAGRDIVRIDRLGKTFLSHLWQSRKERLAIGDRSCGNNAPSSRGRVVNGLTAKAC 781

[Close]

BLAST of mRNA_E_fasciculatus_S2_contig6927.15063.1 vs.
Match: Reverse (transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LRL5_9PHAE)

HSP 1 Score: 150 bits (378), Expect = 1.730e-40
Identity = 71/86 (82.56%), Postives = 76/86 (88.37%), Query Frame = -1

Query:    1 GKIEGRYREMFEAWNRKDKIVAVLGHTKWVETAGSDIGRIGRLGKTFLSHLWQSRKERLAIGDRSCGNNASSSRGCVVNGLTTKAC 258
            GKI+G YREMFEAWNR+++ VAVLGH +WVE AG DI RI RLGKTFLSHLWQSRKERLAIGDRSCGNNA SSRG VVNGLT KAC
Sbjct:  360 GKIDGTYREMFEAWNREERTVAVLGHRRWVEKAGRDIVRIDRLGKTFLSHLWQSRKERLAIGDRSCGNNAPSSRGRVVNGLTAKAC 445

[Close]

BLAST of mRNA_E_fasciculatus_S2_contig6927.15063.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVX2_9PHAE)

HSP 1 Score: 150 bits (378), Expect = 1.730e-40
Identity = 71/86 (82.56%), Postives = 76/86 (88.37%), Query Frame = -1

Query:    1 GKIEGRYREMFEAWNRKDKIVAVLGHTKWVETAGSDIGRIGRLGKTFLSHLWQSRKERLAIGDRSCGNNASSSRGCVVNGLTTKAC 258
            GKI+G YREMFEAWNR+++ VAVLGH +WVE AG DI RI RLGKTFLSHLWQSRKERLAIGDRSCGNNA SSRG VVNGLT KAC
Sbjct:  411 GKIDGTYREMFEAWNREERTVAVLGHRRWVEKAGRDIVRIDRLGKTFLSHLWQSRKERLAIGDRSCGNNAPSSRGRVVNGLTAKAC 496

[Close]

BLAST of mRNA_E_fasciculatus_S2_contig6927.15063.1 vs.
Match: Reverse (transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JE77_9PHAE)

HSP 1 Score: 151 bits (382), Expect = 3.540e-40
Identity = 75/108 (69.44%), Postives = 83/108 (76.85%), Query Frame = -1

Query:    1 RAIKLSTTPW----RDCT*LSWGKIEGRYREMFEAWNRKDKIVAVLGHTKWVETAGSDIGRIGRLGKTFLSHLWQSRKERLAIGDRSCGNNASSSRGCVVNGLTTKAC 312
            R   ++  PW    R+      GKI+G YREMFEAWNR+++ VAVLGH +WVE AG DI RI RLGKTFLSHLWQSRKERLAIGDRSCGNNA SSRG VVNGLT KAC
Sbjct:  588 RVHVVAECPWYKKEREVYVTELGKIDGTYREMFEAWNREERTVAVLGHRRWVEKAGRDIVRIDRLGKTFLSHLWQSRKERLAIGDRSCGNNAPSSRGRVVNGLTAKAC 695

[Close]

BLAST of mRNA_E_fasciculatus_S2_contig6927.15063.1 vs.
Match: Uncharacterized (protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K453_9PHAE)

HSP 1 Score: 140 bits (354), Expect = 7.230e-40
Identity = 66/80 (82.50%), Postives = 71/80 (88.75%), Query Frame = -1

Query:   19 GKIEGRYREMFEAWNRKDKIVAVLGHTKWVETAGSDIGRIGRLGKTFLSHLWQSRKERLAIGDRSCGNNASSSRGCVVNG 258
            GKI+G YREMFEAWNR+++ VAVLGH +W E AG DI RIGRLGKTFLSHLWQSRKERLAIGDRSCGNNA SSRG VVNG
Sbjct:  108 GKIDGTYREMFEAWNREERTVAVLGHRRWAEKAGRDIVRIGRLGKTFLSHLWQSRKERLAIGDRSCGNNAPSSRGPVVNG 187

[Close]

BLAST of mRNA_E_fasciculatus_S2_contig6927.15063.1 vs.
Match: Reverse (transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRD0_9PHAE)

HSP 1 Score: 148 bits (374), Expect = 8.300e-40
Identity = 69/86 (80.23%), Postives = 75/86 (87.21%), Query Frame = -1

Query:    1 GKIEGRYREMFEAWNRKDKIVAVLGHTKWVETAGSDIGRIGRLGKTFLSHLWQSRKERLAIGDRSCGNNASSSRGCVVNGLTTKAC 258
            GKI+G YREMFEAWNR+++ VAV+GH +WVE AG DI RI RLGKTFLSHLWQSRKERLAIGDRSCGNNA SSRG VVNGLT K C
Sbjct:  428 GKIDGTYREMFEAWNREERTVAVVGHRRWVEKAGRDIARIDRLGKTFLSHLWQSRKERLAIGDRSCGNNAPSSRGRVVNGLTAKTC 513

[Close]

BLAST of mRNA_E_fasciculatus_S2_contig6927.15063.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJF9_9PHAE)

HSP 1 Score: 149 bits (376), Expect = 9.750e-40
Identity = 74/108 (68.52%), Postives = 82/108 (75.93%), Query Frame = -1

Query:    1 RAIKLSTTPW----RDCT*LSWGKIEGRYREMFEAWNRKDKIVAVLGHTKWVETAGSDIGRIGRLGKTFLSHLWQSRKERLAIGDRSCGNNASSSRGCVVNGLTTKAC 312
            R    +  PW    R+      GKI+  YREMFEAWNR+++ VAVLGH +WVE AG D+ RI RLGKTFLSHLWQSRKERLAIGDRSCGNNASSSRG VVNGLT KAC
Sbjct:  477 RVHVFAECPWCKKEREVYVTELGKIDRTYREMFEAWNREERTVAVLGHKRWVEKAGRDLVRIDRLGKTFLSHLWQSRKERLAIGDRSCGNNASSSRGRVVNGLTAKAC 584

The following BLAST results are available for this feature:

BLAST of mRNA_E_fasciculatus_S2_contig6927.15063.1 vs.

BLAST of mRNA_E_fasciculatus_S2_contig6927.15063.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
Uncharacterized	5.540e-42	81.40	protein n=7 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=...	[more]
Uncharacterized	7.410e-42	81.40	protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=...	[more]
Uncharacterized	1.840e-41	66.67	protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=...	[more]
Reverse	3.710e-41	77.66	transcriptase domain-containing protein n=4 Tax=Ec...	[more]
Reverse	1.730e-40	82.56	transcriptase domain-containing protein n=1 Tax=Ec...	[more]
Uncharacterized	1.730e-40	82.56	protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=...	[more]
Reverse	3.540e-40	69.44	transcriptase domain-containing protein n=1 Tax=Ec...	[more]
Uncharacterized	7.230e-40	82.50	protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 131...	[more]
Reverse	8.300e-40	80.23	transcriptase domain-containing protein n=1 Tax=Ec...	[more]
Uncharacterized	9.750e-40	68.52	protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
E_fasciculatus_S2_contig6927	contig	E_fasciculatus_S2_contig6927:5921..6316 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90	2022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO2	2022-07-07

Properties


Property Name	Value
Stop	1
Start	1
Model size	396
Hectar predicted targeting category	mitochondrion
Exons	1
Cds size	252

Relationships

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1696842349.9864721-UTR-E_fasciculatus_S2_contig6927:5920..5996	1696842349.9864721-UTR-E_fasciculatus_S2_contig6927:5920..5996	Ectocarpus fasciculatus EfasUO2	UTR	E_fasciculatus_S2_contig6927 5921..5996 +
1696842350.0205052-UTR-E_fasciculatus_S2_contig6927:6248..6316	1696842350.0205052-UTR-E_fasciculatus_S2_contig6927:6248..6316	Ectocarpus fasciculatus EfasUO2	UTR	E_fasciculatus_S2_contig6927 6249..6316 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1696842350.0077543-CDS-E_fasciculatus_S2_contig6927:5996..6248	1696842350.0077543-CDS-E_fasciculatus_S2_contig6927:5996..6248	Ectocarpus fasciculatus EfasUO2	CDS	E_fasciculatus_S2_contig6927 5997..6248 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_E_fasciculatus_S2_contig6927.15063.1	prot_E_fasciculatus_S2_contig6927.15063.1	Ectocarpus fasciculatus EfasUO2	polypeptide	E_fasciculatus_S2_contig6927 5997..6248 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at E_fasciculatus_S2_contig6927:5921..6316+
coding sequence from alignment at E_fasciculatus_S2_contig6927:5921..6316+

protein sequence of mRNA_E_fasciculatus_S2_contig6927.15063.1

>prot_E_fasciculatus_S2_contig6927.15063.1 ID=prot_E_fasciculatus_S2_contig6927.15063.1|Name=mRNA_E_fasciculatus_S2_contig6927.15063.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=84bp
MANRSFLLCQRWLKNVFPSLPILPISLPAVSTHLVCPSTATILSLRFHAS
NISLYLPSIFPQLSHVQSRHGVVESLIARRYCP*

mRNA from alignment at E_fasciculatus_S2_contig6927:5921..6316+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_E_fasciculatus_S2_contig6927.15063.1 ID=mRNA_E_fasciculatus_S2_contig6927.15063.1|Name=mRNA_E_fasciculatus_S2_contig6927.15063.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=396bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig6927:5921..6316+ (Ectocarpus fasciculatus EfasUO2)
GCATGCCTTAGTCGTTAGACCATTGACCACGCACCCTCGAGAGGACGAAG
CATTGTTCCCACAGGATCGATCACCGATGGCCAATCGTTCCTTCCTACTT
TGCCAAAGGTGGCTCAAAAATGTCTTCCCTAGTCTACCTATCCTACCAAT
ATCACTTCCCGCCGTTTCTACCCACTTGGTATGCCCCAGTACAGCTACTA
TCTTGTCCTTGCGATTCCATGCCTCAAACATCTCCCTGTACCTCCCCTCT
ATTTTTCCCCAGCTCAGTCATGTACAGTCCCGCCACGGGGTCGTGGAAAG
CTTGATCGCCCGCCGCTATTGTCCTTAACCAGCACACGAAGACGTGCTTC
TCCTGTCATGCTTCTCCTGGAGGACAGGAGAAGCACGTCTGCGTGT

Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig6927:5921..6316+

>mRNA_E_fasciculatus_S2_contig6927.15063.1 ID=mRNA_E_fasciculatus_S2_contig6927.15063.1|Name=mRNA_E_fasciculatus_S2_contig6927.15063.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=252bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig6927:5921..6316+ (Ectocarpus fasciculatus EfasUO2)
ATGGCCAATCGTTCCTTCCTACTTTGCCAAAGGTGGCTCAAAAATGTCTT
CCCTAGTCTACCTATCCTACCAATATCACTTCCCGCCGTTTCTACCCACT
TGGTATGCCCCAGTACAGCTACTATCTTGTCCTTGCGATTCCATGCCTCA
AACATCTCCCTGTACCTCCCCTCTATTTTTCCCCAGCTCAGTCATGTACA
GTCCCGCCACGGGGTCGTGGAAAGCTTGATCGCCCGCCGCTATTGTCCTT
AA