mRNA_E_fasciculatus_S2_contig6923.15060.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig6923.15060.1
Unique NamemRNA_E_fasciculatus_S2_contig6923.15060.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig6923.15060.1 vs.
Match: U-box (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU34_ECTSI)

HSP 1 Score: 449 bits (1156), Expect = 3.070e-148
Identity = 238/249 (95.58%), Postives = 242/249 (97.19%), Query Frame = 1 
Query:  187 ACKSASDPWLAPCAGLTSLLQASKKACDVAVKAKGFALPKEGTPEAAPVPAPVPTGPSALQMLLMQGGARNRMVSPRSGPMAANNTVLGRILRIGFPATDPLVKDSFDKVYRRGQPGVKSALQTVQGRLKVVNSVASGIVMLLVKASVESRKAVVAWFADALLVNTPAEASNPDPLKAASSEFLMNMSVALLGLAMPIVRDEGKFKKIDAASFLSSKAAIRDLFPQDTTMLVTRGSSSASPSDSPEEGA 933
            ACKSASDPWLAPCAGLTSLLQASKKACDVAVKAKGFALPKEGTPEAAPVPAPVPTGP+ALQMLLMQGGARNRMVSPRSGPMAANNTVLGRILRIGFPATDPL  DSFDKVYRRGQPG+ SALQTV+GRLKVV+SVASGIVMLLVKASVESRKAVVAWFADALLVNTPAEASNPDPLKAAS EFLMNMSVALLGLAMPIVRDEGKFKKIDAASFLSSKAAIRDLFP DTTMLVTR  SSASPSDSPEEGA
Sbjct:  118 ACKSASDPWLAPCAGLTSLLQASKKACDVAVKAKGFALPKEGTPEAAPVPAPVPTGPNALQMLLMQGGARNRMVSPRSGPMAANNTVLGRILRIGFPATDPLATDSFDKVYRRGQPGINSALQTVRGRLKVVHSVASGIVMLLVKASVESRKAVVAWFADALLVNTPAEASNPDPLKAASPEFLMNMSVALLGLAMPIVRDEGKFKKIDAASFLSSKAAIRDLFPDDTTMLVTRTPSSASPSDSPEEGA 366
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BLAST of mRNA_E_fasciculatus_S2_contig6923.15060.1 vs.
Match: Ubiquitin (elongating factor core-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z369_9STRA)

HSP 1 Score: 139 bits (350), Expect = 4.410e-33
Identity = 85/202 (42.08%), Postives = 120/202 (59.41%), Query Frame = 1 
Query:  280 KAKGFALPKEGTPEAAPVPAPVPTGPSALQMLLMQGGARNRMVSPRSGPMAANNTVLGRILRIGFPATDPLVKDSFDKVYRRGQPGVKSALQTVQGRLKVVNSVASGIVMLLVKASVESRKAVVAWFADALLVNTPAEASNPDPLKAASSEFLMNMSVALLGLAMPIVRDEGKFKKI-DAASFLSSKAAIRDLFPQDTTMLV 882
            K + F+LPKEGTPEAAP P   P  P           AR  +V+PR+G     +TVLG +LR+G    DP V ++F    +R +  + + +   +G L      A  +V  L++A   +R AVV W ++A+L+NT AEAS  DPLK AS  FL+N+SV L+ LAMP+V D  KF K+ DA +FL +++    +FP+DTT LV
Sbjct:   90 KMREFSLPKEGTPEAAPRPMYPPGMPQFF--------ARPVLVNPRNGAAVERSTVLGLVLRLGPSPADPEVLNTFKGAAQRSRQDIDATMDAQRGPLAAAQGAAFDLVSQLLRAGPVTRAAVVHWASEAVLLNTGAEASRIDPLKTASDSFLLNLSVLLVKLAMPVVSDPAKFDKVVDAEAFLRNQSVRAGVFPKDTTPLV 283
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BLAST of mRNA_E_fasciculatus_S2_contig6923.15060.1 vs.
Match: U-box (domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RGE9_THAOC)

HSP 1 Score: 101 bits (252), Expect = 3.500e-20
Identity = 92/309 (29.77%), Postives = 141/309 (45.63%), Query Frame = 1 
Query:    1 PGIFDEPEADSPALLLKMLTAEGPD---------KGLPPGFLAPLMAELDAQGGLGDVVGGLVDSLNAQIGACKSASDPWLAPCAGL-------TSLLQ---ASKKACDVAVKAKGFALPKEGTPEAAPV---PAPVPTGPSALQMLLMQGGARNRMVSPRSGPMAANNTVLGRILRIGFPATDPLVKDSFDKVYRRGQPGVKSALQTVQGRLKVVNSVASGIVM-LLVKASVESRKAVVAWFADALLVNTPAEASNPDPLKAASSEFLMNMSVALLGLAMPIVRDEGKFKKIDAASFLSSKAAIRDLF 858
            P +F E  +++P  L K L +   D         +G    F A L  EL +Q GL   +  +   +   +  CKS  D    P  GL       TS L+   ++KKA  V      F LP   T +A  V     P    P A   + + G      V  RSG    + T+LG +LR+G P+  P V  +F    RR    ++S     +  L+   S  + +V  LLV +  +SR+ V+ W  DAL++N+ A  S+PDP K ++ EFL N+S  +L +  P + D+ K   +D   F+ S  A+R ++
Sbjct:    3 PDLF-ELASEAPMQLAKCLASTATDPINSITFDVQGKNTSFYACLCEELHSQDGLDTTIDAVTKCITESLVKCKSLVDDI--PDGGLGTKALYLTSALREMCSNKKAAVVLSNNPAFLLPPANTAQAVQVVKVDPPYMAQPQAAMSIRISG------VKRRSGLGLESQTILGLVLRLGVPSASPTVVSAFQAPARRSPSDIRSTQAGFRRTLETYQSKCNELVKALLVSSGADSRQKVIQWITDALVINSNAAGSHPDPRKISTYEFLFNLSAVMLKMCDPFISDQKKAALVDPG-FVCSPDALRGVY 301
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BLAST of mRNA_E_fasciculatus_S2_contig6923.15060.1 vs.
Match: U-box (domain-containing protein n=1 Tax=Hebeloma cylindrosporum h7 TaxID=686832 RepID=A0A0C3CGK6_HEBCY)

HSP 1 Score: 60.8 bits (146), Expect = 1.470e-6
Identity = 44/150 (29.33%), Postives = 74/150 (49.33%), Query Frame = 1 
Query:  442 TVLGRILRIGF--PATDPLVKDSFDKVYRRGQPGVKSALQTVQGRLKVVNSVASGIVMLLVKASVESRKAVVAWFADALLVNTPAEASNPDPLKAASSEFLMNMSVALLGLAMPIVRDEGKFKKIDAASFLSSKAAIRDLFPQDTTMLVT 885
            +++G + R+G   P    + K  F    RR +  V+S+  +++G LK + +    I   LV+ASVE+R+AV+ +FA  + +N        DP   AS  F++NM   LL  A P +  +  + K+D    L   A+ R     +T +  T
Sbjct:  360 SLMGPLCRLGVFSPEWPGIAKTYFSDSERRTRDDVESSYASLRGTLKALQTSLFQIFNALVRASVETREAVLNYFARVISLNVKRSGMQVDPATVASDSFMLNMQSVLLRFAEPFM--DATYSKMDRIDPLYYAASSRISLGDETRIKAT 507
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BLAST of mRNA_E_fasciculatus_S2_contig6923.15060.1 vs.
Match: U-box (domain-containing protein (Fragment) n=1 Tax=Gymnopilus dilepis TaxID=231916 RepID=A0A409WZR5_9AGAR)

HSP 1 Score: 60.5 bits (145), Expect = 1.840e-6
Identity = 40/138 (28.99%), Postives = 72/138 (52.17%), Query Frame = 1 
Query:  442 TVLGRILRIGFPATD--PLVKDSFDKVYRRGQPGVKSALQTVQGRLKVVNSVASGIVMLLVKASVESRKAVVAWFADALLVNTPAEASNPDPLKAASSEFLMNMSVALLGLAMPIV-RDEGKFKKIDAASFLSSKAAI 846
            ++LG + R+G  A +   + +  F +  +R +  +++   +++G LK + +    +   LV+AS ESR+AV+ +FA  + +N     S+ DP   AS  F++NM   LL  A P +  +  K  +ID   F  SK  +
Sbjct:  116 SLLGPLCRLGVFAVEWPGIAQTYFSEAEKRSRQDIETTFASLRGTLKSLQNSLFQVFNTLVRASPESREAVLNYFARVISLNVRRAGSHVDPTTVASDSFMLNMQAVLLRFAEPFMDANYSKMDRIDPFYFARSKRIV 253
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BLAST of mRNA_E_fasciculatus_S2_contig6923.15060.1 vs.
Match: U-box (domain-containing protein n=1 Tax=Piloderma croceum (strain F 1598) TaxID=765440 RepID=A0A0C3CHG2_PILCF)

HSP 1 Score: 58.9 bits (141), Expect = 6.100e-6
Identity = 46/156 (29.49%), Postives = 81/156 (51.92%), Query Frame = 1 
Query:  442 TVLGRILRIG-FPATDPLVKDS-FDKVYRRGQPGVKSALQTVQGRLKVVNSVASGIVMLLVKASVESRKAVVAWFADALLVNTPAEASNPDPLKAASSEFLMNMSVALLGLAMPIVRDEGKFKKIDAASFLSSKAAIRDLFPQDTTMLVTRGSSSA 903
            T+LG I R+G F    P +  + F    +R +P ++S+  +++G LK + S    +   LV+AS +SR+AV+ +FA A+ +N    A   +P   A+  F++N+   +L  A P +  + K+ KID    L    + R    ++T +  T   +SA
Sbjct:  282 TLLGPICRLGVFGREWPSIPQTYFSDPEKRTRPDIESSNASLRGTLKSLQSSLFQVFNTLVRASPDSREAVLRYFATAISLNVKRAAMQVEPESVATDSFMVNLQSVMLRFAEPFM--DAKYSKIDRIDPLYFAHSSRIDVREETRIKATSDEASA 435
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BLAST of mRNA_E_fasciculatus_S2_contig6923.15060.1 vs.
Match: U-box (domain-containing protein n=1 Tax=Cylindrobasidium torrendii FP15055 ss-10 TaxID=1314674 RepID=A0A0D7AZ51_9AGAR)

HSP 1 Score: 58.5 bits (140), Expect = 8.260e-6
Identity = 41/135 (30.37%), Postives = 72/135 (53.33%), Query Frame = 1 
Query:  442 TVLGRILRIG-FPATDP-LVKDSFDKVYRRGQPGVKSALQTVQGRLKVVNSVASGIVMLLVKASVESRKAVVAWFADALLVNTPAEASNPDPLKAASSEFLMNMSVALLGLAMPIV-RDEGKFKKIDAASFLSSK 837
            +++G + R+G FP   P + K  F +  ++ +  V+S+  +++G LK +     G+   LV+AS +SR+AV+++FA  + +N        DP   A+  F+ NMS  LL  A P +  +  K  +ID   F  S+
Sbjct:  364 SLMGPLCRLGVFPREWPGIAKTYFSEPDKKTRGDVESSNASLRGTLKTLQGSLFGVFNALVRASPQSREAVLSYFARVVSLNAKRAGMQVDPNTVATDSFMFNMSSVLLQFAEPFIDANYTKMDRIDPTYFAKSE 498
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BLAST of mRNA_E_fasciculatus_S2_contig6923.15060.1 vs.
Match: U-box (domain-containing protein n=1 Tax=Jaapia argillacea MUCL 33604 TaxID=933084 RepID=A0A067Q5J2_9AGAM)

HSP 1 Score: 58.5 bits (140), Expect = 8.270e-6
Identity = 39/126 (30.95%), Postives = 68/126 (53.97%), Query Frame = 1 
Query:  442 TVLGRILRIGFPATD--PLVKDSFDKVYRRGQPGVKSALQTVQGRLKVVNSVASGIVMLLVKASVESRKAVVAWFADALLVNTPAEASNPDPLKAASSEFLMNMSVALLGLAMPIVRDEGKFKKID 813
            ++LG ++R+G    +   L +  F +  +R +P V S+  +++G LK + S    +   +V+AS ESR+AV+ +FA  + +N        DP   AS  F++N+   LL  A P +  + K+ KID
Sbjct:  364 SLLGPLIRLGIGEREWPVLARSYFSEPEKRTKPDVDSSFASLRGTLKSLQSSLFQVFNTMVRASPESREAVLQYFARVVQLNGKRAGMQVDPDTVASDSFMVNLQSILLRFAEPFM--DAKYTKID 487
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BLAST of mRNA_E_fasciculatus_S2_contig6923.15060.1 vs.
Match: U-box (domain-containing protein n=1 Tax=Galerina marginata (strain CBS 339.88) TaxID=685588 RepID=A0A067TSH3_GALM3)

HSP 1 Score: 57.8 bits (138), Expect = 1.470e-5
Identity = 39/126 (30.95%), Postives = 65/126 (51.59%), Query Frame = 1 
Query:  442 TVLGRILRIGFPATD--PLVKDSFDKVYRRGQPGVKSALQTVQGRLKVVNSVASGIVMLLVKASVESRKAVVAWFADALLVNTPAEASNPDPLKAASSEFLMNMSVALLGLAMPIVRDEGKFKKID 813
            ++LG + R+G  AT+   +    F    +R +  ++S   +++G LK + S    I   LV+AS E+R+AV+ +FA  + +N        DP   A+  F++NM   LL  A P +  +  F KID
Sbjct:  362 SLLGPLCRLGVFATEWPGIAATYFSDPDKRSREDIESTYASLRGTLKSLQSSLFRIFNALVRASTETREAVLDYFARVVTLNVKRAGMQVDPTTVATDSFMLNMQAVLLRFAEPFM--DANFTKID 485
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BLAST of mRNA_E_fasciculatus_S2_contig6923.15060.1 vs.
Match: U-box (domain-containing protein n=1 Tax=Panaeolus cyanescens TaxID=181874 RepID=A0A409YM09_9AGAR)

HSP 1 Score: 57.8 bits (138), Expect = 1.470e-5
Identity = 39/126 (30.95%), Postives = 66/126 (52.38%), Query Frame = 1 
Query:  442 TVLGRILRIG--FPATDPLVKDSFDKVYRRGQPGVKSALQTVQGRLKVVNSVASGIVMLLVKASVESRKAVVAWFADALLVNTPAEASNPDPLKAASSEFLMNMSVALLGLAMPIVRDEGKFKKID 813
            +++G + R+G  +P    + +  F +  RR +  V+S+  +++G +K + S    I   LV+AS ESR+AV+ +FA  + +N        DP   AS  F+ NM   LL  A P +  +  F K+D
Sbjct:  378 SLMGPLCRLGVFYPDWPGIAQTYFSEPERRTRDDVESSFASLRGTIKSLQSSLFQIFNTLVRASAESREAVLDYFARVISLNVKRAGLQVDPATVASDSFMYNMQSILLRFAEPFM--DANFTKMD 501
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig6923.15060.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
U-box3.070e-14895.58domain-containing protein n=1 Tax=Ectocarpus silic... [more]
Ubiquitin4.410e-3342.08elongating factor core-domain-containing protein n... [more]
U-box3.500e-2029.77domain-containing protein n=1 Tax=Thalassiosira oc... [more]
U-box1.470e-629.33domain-containing protein n=1 Tax=Hebeloma cylindr... [more]
U-box1.840e-628.99domain-containing protein (Fragment) n=1 Tax=Gymno... [more]
U-box6.100e-629.49domain-containing protein n=1 Tax=Piloderma croceu... [more]
U-box8.260e-630.37domain-containing protein n=1 Tax=Cylindrobasidium... [more]
U-box8.270e-630.95domain-containing protein n=1 Tax=Jaapia argillace... [more]
U-box1.470e-530.95domain-containing protein n=1 Tax=Galerina margina... [more]
U-box1.470e-530.95domain-containing protein n=1 Tax=Panaeolus cyanes... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig6923contigE_fasciculatus_S2_contig6923:109..6289 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score449.5
Seed ortholog evalue1.3e-123
Seed eggNOG ortholog2880.D8LU34
Preferred nameUBE4B
Model size947
KEGG koko:K10596,ko:K10597
KEGG Pathwayko04120,ko04141,map04120,map04141
Hectar predicted targeting categoryother localisation
GOsGO:0000151,GO:0000166,GO:0000209,GO:0003007,GO:0003205,GO:0003206,GO:0003208,GO:0003222,GO:0003229,GO:0003231,GO:0003674,GO:0003824,GO:0004842,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006457,GO:0006464,GO:0006508,GO:0006511,GO:0006513,GO:0006807,GO:0006915,GO:0006950,GO:0007154,GO:0007165,GO:0007275,GO:0007399,GO:0007507,GO:0007517,GO:0008144,GO:0008150,GO:0008152,GO:0008219,GO:0008626,GO:0009056,GO:0009057,GO:0009314,GO:0009411,GO:0009416,GO:0009628,GO:0009636,GO:0009653,GO:0009887,GO:0009888,GO:0009893,GO:0009987,GO:0010033,GO:0010243,GO:0010498,GO:0010604,GO:0012501,GO:0014706,GO:0016043,GO:0016567,GO:0016740,GO:0017076,GO:0019222,GO:0019538,GO:0019787,GO:0019899,GO:0019941,GO:0022008,GO:0023052,GO:0030030,GO:0030154,GO:0030163,GO:0030182,GO:0030433,GO:0030554,GO:0031175,GO:0031323,GO:0031325,GO:0031396,GO:0031398,GO:0031399,GO:0031401,GO:0031625,GO:0032268,GO:0032270,GO:0032446,GO:0032501,GO:0032502,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0033554,GO:0034450,GO:0034976,GO:0035639,GO:0035690,GO:0036094,GO:0036211,GO:0036503,GO:0042221,GO:0042493,GO:0043161,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044389,GO:0044424,GO:0044444,GO:0044464,GO:0045471,GO:0046677,GO:0048468,GO:0048513,GO:0048518,GO:0048522,GO:0048644,GO:0048666,GO:0048699,GO:0048729,GO:0048731,GO:0048738,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051082,GO:0051087,GO:0051117,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0051603,GO:0051716,GO:0051865,GO:0055008,GO:0055010,GO:0060255,GO:0060415,GO:0060537,GO:0061061,GO:0061383,GO:0061384,GO:0061630,GO:0061659,GO:0065007,GO:0070647,GO:0070887,GO:0071236,GO:0071310,GO:0071361,GO:0071704,GO:0071840,GO:0072359,GO:0080090,GO:0097159,GO:0097190,GO:0097237,GO:0097305,GO:0097306,GO:0097367,GO:0120036,GO:0140096,GO:1901265,GO:1901363,GO:1901564,GO:1901565,GO:1901575,GO:1901698,GO:1901700,GO:1901701,GO:1902494,GO:1903320,GO:1903322,GO:1990234
Exons7
EggNOG free text desc.peptidyl-tyrosine sulfation
EggNOG OGsCOG5113@1,KOG2042@2759
EC2.3.2.27
Cds size945
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04121
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig6923.15060.1prot_E_fasciculatus_S2_contig6923.15060.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig6923 109..6289 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842349.7087386-CDS-E_fasciculatus_S2_contig6923:108..1991696842349.7087386-CDS-E_fasciculatus_S2_contig6923:108..199Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig6923 109..199 +
1696842349.7222314-CDS-E_fasciculatus_S2_contig6923:930..10251696842349.7222314-CDS-E_fasciculatus_S2_contig6923:930..1025Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig6923 931..1025 +
1696842349.7321637-CDS-E_fasciculatus_S2_contig6923:1884..20201696842349.7321637-CDS-E_fasciculatus_S2_contig6923:1884..2020Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig6923 1885..2020 +
1696842349.7471235-CDS-E_fasciculatus_S2_contig6923:3510..36571696842349.7471235-CDS-E_fasciculatus_S2_contig6923:3510..3657Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig6923 3511..3657 +
1696842349.7565517-CDS-E_fasciculatus_S2_contig6923:4701..48651696842349.7565517-CDS-E_fasciculatus_S2_contig6923:4701..4865Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig6923 4702..4865 +
1696842349.7649145-CDS-E_fasciculatus_S2_contig6923:5255..54291696842349.7649145-CDS-E_fasciculatus_S2_contig6923:5255..5429Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig6923 5256..5429 +
1696842349.773205-CDS-E_fasciculatus_S2_contig6923:6151..62891696842349.773205-CDS-E_fasciculatus_S2_contig6923:6151..6289Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig6923 6152..6289 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig6923.15060.1

>prot_E_fasciculatus_S2_contig6923.15060.1 ID=prot_E_fasciculatus_S2_contig6923.15060.1|Name=mRNA_E_fasciculatus_S2_contig6923.15060.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=315bp
PGIFDEPEADSPALLLKMLTAEGPDKGLPPGFLAPLMAELDAQGGLGDVV
GGLVDSLNAQIGACKSASDPWLAPCAGLTSLLQASKKACDVAVKAKGFAL
PKEGTPEAAPVPAPVPTGPSALQMLLMQGGARNRMVSPRSGPMAANNTVL
GRILRIGFPATDPLVKDSFDKVYRRGQPGVKSALQTVQGRLKVVNSVASG
IVMLLVKASVESRKAVVAWFADALLVNTPAEASNPDPLKAASSEFLMNMS
VALLGLAMPIVRDEGKFKKIDAASFLSSKAAIRDLFPQDTTMLVTRGSSS
ASPSDSPEEGASSAA
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mRNA from alignment at E_fasciculatus_S2_contig6923:109..6289+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig6923.15060.1 ID=mRNA_E_fasciculatus_S2_contig6923.15060.1|Name=mRNA_E_fasciculatus_S2_contig6923.15060.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=6181bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig6923:109..6289+ (Ectocarpus fasciculatus EfasUO2)
CCCGGGATTTTTGACGAGCCGGAAGCCGACTCTCCTGCCTTGCTGCTCAA
GATGCTCACGGCGGAGGGGCCGGACAAAGGCCTGCCGCCAGGTCTGTTTT
GCGTGTGCGTTTTTGTAGCATGGGCCGCGCTTGTCCGGCTGGTCGATGAA
AAGACGTCCGTCTTAGTCTCAGTGCGGTTGAGTGTGGCTGTGTGCGTGTG
CACGTTGAGCAACAGGTGTATGTGTCGTATGGGCCGATTGATGCCTGTCC
TAAATCTCTTGGTTTCTGTTTCGTGTTTCGTGTTTCGTGTTTCGTGTTTC
GTATTTCGTACGGCGGGGCCCCTTTCAGCAGCTTTGCCACTATTAATAGG
GGCAAGACTGCCATTAAACAGGGTCATTTTTTTCGCGTTAAACCAGAGGC
ATGTGAGCCTTCTGGATCGAAAAGGGGTTGGTGGCAGAGATAGATACAAA
CGATGTTGCCCCCTAGCGAAATATGCATGCCGTGCGTACTTCGTCGGTGA
GAAGGGGAGGGGGGGAGGGGGGAGCGACGGAGACGAAAATCCCTACAGCC
GTCCATCATCATTTTTTGAGGTGTTTTTTCGACTCAAAGGTGTGCCCGGG
GCATCCATCAATTTTTGTCAGGTTTGTAAAATGTGCGATTACTTTTGGGG
GCCCCTCCGCACGGCGATCCCACCCCTACACTTCTTTTGTTGACGCCCGC
ACCCCGTTTTTTGCTCCACCACCCCCCTTGTTTGTTTTTGTTCCCTTCCT
CTGGCGTTGCCCTTCCGGAAAACCGGACCGACTCTGTCGTTCGAACTACA
ATGACGGACAAATTTACGACAGGATTCTTGGCGCCTCTGATGGCGGAGTT
AGATGCCCAAGGCGGACTGGGGGACGTGGTGGGGGGGCTGGTCGACAGCT
TGAACGCACAGATAGGGGTAAGAAGTAAGAACGAAACAATACACATGCAG
CTGCTAAATCCTAATCCTAGTGCTCGCCGGAACGGAATACGCGCATGTAC
AGTAGGGGTGAGAACGCCACAGCATAGCTGCAAGCAGGCCACACCTAGCG
CTGTAGCGTCAACTAAATACAGCACGCCACGTAGGGGTGAGAGACTTGAC
AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAT
CAGATCGGGTGACGTGACGCATGCACAGCTTTTTGTAGCAGCTTAGGGGT
CATGAAAAAGTGCGGTACAATTAGCAAGAATGTGCAACCGCACTACGTAC
CGGCACGCCGACACCGTGCACCGTGCATTGCTGTTGCCAACCAAACTGTT
GAGGGAAGAACAGCACCATTGATGGACGGCCGGTTTGTCAGTACTAAGAC
CAAATCGCGCACCACTACGCCATGCAGCGGTCGCAAAGGAAGCTTGTGCT
CTAGATACTAGGGCATTCGGTCGAGACGCCGTAGCTTACTATTACACTAT
TACACTATTACACCTGGCCTCAAGACAGGTTGGCTTCGCTGACTGGTTTG
CTTGCACCTGTGAAACGGTTTCCCATATTATTATGATATTATGATATTAC
GAATACCTGAGGACCGAATCCCTTACAAGTAGAGGGGGAGGCGAGGTCGC
AAGGTCGGAAGACACTACGACGCACGGGGTTACCATGGGATGACACGGAA
CAAAGCCACGTGTAGGACTATTTGTTGCTTTCAGCTCAGGTCAAAGAACA
AGACTGCATCGCGATTCGTTGGTGTGAGCGAAGAATGCATAACCCGATTT
CTGGAATAATAATCCTATCTCTACAGGCGTGTAAGTCGGCGTCGGATCCA
TGGCTAGCCCCCTGCGCAGGGCTGACAAGTCTGCTGCAAGCGTCGAAGAA
GGCCTGCGACGTTGCTGTCAAGGCGAAGGGGTTTGCACTCCCGAAGGAAG
GAACGCCGGAGGGTGAGTGTCTCGTTTACCTCTGCAGAATGGCTCTCCCT
TTCACTCGCGCAGTTATAGCATACGACCGACCGATCAAAATACCGATTCC
CCCGTTCTTTTTCTCACCAGGGTACAGCAGCATGTGCCTTATTGTACATA
TGTCCTACTGCCAAACAATGTGAGTACGAAAACACGCTATTCTCTGGAGG
CACACCGGCTTGTTCTAGCTCCTCTTCTCTTCTGTAGGTCGTTGAACAAC
GCCGTAAGCATGTCGTTGACGTGCGCTATTTATCGCTGGTCAACGTGACC
GGAGCATGGAGGGCGGATACTAAGGCCATGGGGAGCTCAAAGTTGATGCA
ATCATTGTAGTCAAGATCAAGACGAAGCGCCGGATAACCCATCCCGGCCA
TGACGTGTCGCAAGCGTCGCCCCCACACTTTCGGGGAGGCCCCCGAGCAT
TAGTGGTTCGTTCACTCCCCTGCCAAATGTGCAGCCTGTTCGGAGGAACC
TCAGACCAACGGTGGGTTTTAGCACCGTCGGCCCGGGGTTCCTCCAAAAA
GGTGGCGCACTTGGCAGGGGAATAAACCACTGGAGCTCGGGTGGGCATCT
CGGCCTCGCCGTACGTGTCTGCGACGCGTAATGGCCGGGGGTATCTGGCG
CGTCGGTGTCGACCAAATGATTGAATCCGAGTTTGAGTTCCCCATGGTCT
TAGTACCCGCCCTCCATGCTCCGGTCACGATGACCAGCTAGGATACAGAT
ACAGCAGACGGCGACGACATGCCCAATGCTTCCGGCGAAGGTCAACGATC
TCCAAGAGGCGAGACGCAGTAACAAGCCGGTCATGTCTCCAGTGAAGAAT
GTGCTTTTGTATCGTTTGGCAGTGCAGTACGTTTTGTCCGCGTTGTTTGA
GCAAGCTTGGGGCACGAAACCATGGCCAAGACAGCCGCATGTGGTGTGTC
GATGTTGACGATTTTGTGTACTTGACTCGTAGACCCTACGTGTAGGAAGG
CCTTGAAAGAGCAACCGAATGAGATGCATTTGATGAAACGGTGTGCGTGT
GTGTTGTAGTTGTTTATTTCTTTCCTACATTTGTGATTGTTTTAACGTCA
ATAGCAACATAGCAACAACAAAACACCCACCACGAACGACATTACAATTC
ACAGCAACGACAGCCACCGCCGCTGCGTCCCCAGCTTAGATAGCATGCAG
GTTCACACAACATTGTCTTGTGATCAATGCTGTACCCAACGCCTCCCCCC
CCCCCCCCCCCCCCCCCCCCCCACACCACCCACCCCTTGTTCGTCCCGCA
CCCCACCCCCCCCCCCCCCCCCCCCCCCCCCGTCCCCCCCACCCGCCCGC
CGTCCNNNNNNNNNNAACGACAGCCCCCGCCCCTGCGCCCCCCGCTTAGA
TAGCATGCAGGTTCACAAAACATTGTTTTGTGATCAATGCTGTACCCAAC
GCCCCCCCCCCCCCCCCCCGGTGCGAACCAAAACGCGTTCTGGTTATGGC
AGCTGCACCGGTACCGGCTCCCGTGCCGACTGGGCCGAGCGCTCTCCAGA
TGCTGCTCATGCAGGGGGGTGCGCGGAATCGCATGGTCAGCCCCAGATCG
GGGCCCATGGCAGCGAACAACACGGTCCTCGGACGAATTCTTCGTATAGG
TGTGTGTGTTCGTTAGCATTGTAAACCAGCTGGCCAATGAAAAGAGGTCA
GTCTCAGTGCGGTTTGTGTGCGTGTTGTTTTGTTCTTACTAGCATCGACC
GTGCTGCTCGCCTGACCAATGAAAATACGTCAGTCTCAGTGCGGTTGAAA
GCACGAAAGCACAAAATGCTTCTTCTTAAGTTCACCTGTGTTTGTGTGTG
TGTTTTTTCGCCTTATCTAATCTGTTGTGGGTGCCAGTGTACGCCTTCTT
GTATTGTATGGTGTGCTTGATGTTGAATATACCAGCCAGTCAGGGTTGGT
TACACAGGAGGTGAGGTGAGGTGAGGTGAGGTGGGATGCGACAAAGGGTG
ACTCGATGCTCCAATCACTACTACTATTACTATTACTGTCGGCTGTAGAC
CTTGCTTTTGTCTCTTCTGTCGATGTGGTGTTCTGCGCAGCACACCCGCC
GGATTGGTCTATCTCAACAGGATAAGGTTGTAAGGCTGAACTGAGCACCA
GCATCATGTGTTTTATTCGCCTTCCTTTCCCTTTCCCTCCTATCCTATCC
TATCCTTCTCCTCCCCGCCCCTCTCTGCTCCTGTGACCATGCTGTATATT
CGATCTGGCAGAAAATATTGACGTGCTCAGACTTCTACGATTGTGCTAAA
TACTATCGTGTGCTGAAGTGTGGTTCACTTGTCTTGCTTGTGTGACAATA
AATATCGAAAGGTCTTTGGCCTGTTGTATTGACCCTCTCGCTAGAGTGTC
CAACCTCCATAGAGTGTGCATATGCATACCTCTTACATGTGGTTGTTGAA
TTCAACCCCTGAGCGCGACGTCTCTTGTGTGTTTTACGGTTGCTGTTTTT
TTTCAACCTCTTGCCGTCGCGTTCATTGTCTCGCTAATGTGCCTCATCTC
TCTCCTAGGCTGTTGTTTTCCTTGTCAACCTCTTGCCGTTGCGTCACTCA
TCTCTCTATACTGTGCCAAATGCATCTCTTGCCCCTCCCTTGTTCAACTT
TGTAACCCTAACCCCTAACTAACTAACTGGCTAACTGAAACAGGCTTCCC
CGCGACGGACCCGCTAGTGAAGGACAGCTTCGACAAAGTCTACCGCCGCG
GCCAACCGGGGGTCAAGTCCGCCCTGCAGACGGTGCAGGGACGGCTGAAG
GTGGTCAACTCCGTGGCGTCCGGGATCGTGATGCTCCTCGTCAAAGCTTC
CGTCGAGGTACATTGTATCTTGTATGTTGTATGTTGTATGTTGCGGCTCC
CACCTTCACCCTTTACCCTTTACCCTTTACCCTTTACCCTATCCCTATCC
CTAGTTCTAGTTCCAGCGCTACCAAAGCTAAGTTAACCGCAAGACGACGG
TCGAGGTGTGTTATGGCCCTCACCCTCACTCTCACTCTAAAACCCTCACC
GTGACCCTTTCCGTCGCGCTAAGCCGTGCCCTAGTTCTTTCAAACGCTCA
TAGCCCTGACCACCTTTTTTTGTTAGTCCTACAGTAACGTTATGTTTACC
ACACGCCTGCTACATACCTGCTCGTTCCATCCCGTTGAACGTCCTGCTAC
ATACCTGCTCGTTCCATCCCGTTGAACGTTTCCAATCGCTCTCACAGTCT
CGCAAGGCTGTGGTGGCGTGGTTTGCCGACGCTCTGCTGGTCAACACGCC
CGCGGAGGCTTCTAACCCTGACCCTCTCAAAGCCGCTAGCTCTGAGTTCT
TGATGAACATGAGCGTGGCGCTTCTGGGCCTGGCGATGCCTATCGTTAGG
GACGAAGGGAAGTTCAAAAAGGTAAATGATTGGTTGGACGGGCGGTGGGG
GGGATTGACCAATCACACCTGTTGCCTTTTGATTGGTCAGGGAGGATGGG
GTGTCTCAGTGATGAAGCAAGTTGGTGTCATTGAGTGATCGATGCTTGTA
TGTGTGTGTTGGTTCAGGGCGGTCGCTTTTTTCAATTGTTGTTACCCCAT
ACACCATCGAACTGTTTTTTTTATCGGATCCAATCAGCGTTCACTTGTCC
GCGAATTTTTCGTATCTTTGTCATGTTCAGATTCGACGTTATTCCTATCT
ACCGTGACATCCTGTGTGTGTGTGTGTTTTTTTGCTTTGGCCCTTTTCTT
GCCCAAAGTGGTGCGTGTCGCTTTTTCTCCTTAGATCGACGCAGCGTAAT
TACTACTTGAGGTGCCAGCGATAAACAAGCAGCACGCGTTCTGTTCATGT
GTCAACTGCTGTTTTACGTATGCTCACCTCGCATAGTCCAAGGGTAGCCG
ATTAAATTAACAACGCTGATGTCTTTGATCTCGAACGGATGTTGCCACAA
TTTTGGAGACAAGGCTGTGTTGAGACCTTGTGCGGAAGGGATTTATTTAA
CCCACGTACAAGCAATTCTAAAAATCGTGTTTTACCTACACCACACCCCA
TCATACTTATCGATTGACACAATCATGCTCATGTCTTCCATAATTACCCC
CGTGCAATATCTCACCTAAGAACCCACGCGTTTTTGTTGTCAGATCGACG
CCGCGTCGTTCCTGTCTAGCAAAGCCGCTATCCGAGACCTTTTCCCTCAA
GATACCACCATGCTCGTCACAAGAGGATCTTCATCAGCATCACCATCAGA
CTCGCCCGAGGAAGGCGCGAGTAGCGCCGCC
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig6923:109..6289+

>mRNA_E_fasciculatus_S2_contig6923.15060.1 ID=mRNA_E_fasciculatus_S2_contig6923.15060.1|Name=mRNA_E_fasciculatus_S2_contig6923.15060.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=945bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig6923:109..6289+ (Ectocarpus fasciculatus EfasUO2)
CCCGGGATTTTTGACGAGCCGGAAGCCGACTCTCCTGCCTTGCTGCTCAA
GATGCTCACGGCGGAGGGGCCGGACAAAGGCCTGCCGCCAGGATTCTTGG
CGCCTCTGATGGCGGAGTTAGATGCCCAAGGCGGACTGGGGGACGTGGTG
GGGGGGCTGGTCGACAGCTTGAACGCACAGATAGGGGCGTGTAAGTCGGC
GTCGGATCCATGGCTAGCCCCCTGCGCAGGGCTGACAAGTCTGCTGCAAG
CGTCGAAGAAGGCCTGCGACGTTGCTGTCAAGGCGAAGGGGTTTGCACTC
CCGAAGGAAGGAACGCCGGAGGCTGCACCGGTACCGGCTCCCGTGCCGAC
TGGGCCGAGCGCTCTCCAGATGCTGCTCATGCAGGGGGGTGCGCGGAATC
GCATGGTCAGCCCCAGATCGGGGCCCATGGCAGCGAACAACACGGTCCTC
GGACGAATTCTTCGTATAGGCTTCCCCGCGACGGACCCGCTAGTGAAGGA
CAGCTTCGACAAAGTCTACCGCCGCGGCCAACCGGGGGTCAAGTCCGCCC
TGCAGACGGTGCAGGGACGGCTGAAGGTGGTCAACTCCGTGGCGTCCGGG
ATCGTGATGCTCCTCGTCAAAGCTTCCGTCGAGTCTCGCAAGGCTGTGGT
GGCGTGGTTTGCCGACGCTCTGCTGGTCAACACGCCCGCGGAGGCTTCTA
ACCCTGACCCTCTCAAAGCCGCTAGCTCTGAGTTCTTGATGAACATGAGC
GTGGCGCTTCTGGGCCTGGCGATGCCTATCGTTAGGGACGAAGGGAAGTT
CAAAAAGATCGACGCCGCGTCGTTCCTGTCTAGCAAAGCCGCTATCCGAG
ACCTTTTCCCTCAAGATACCACCATGCTCGTCACAAGAGGATCTTCATCA
GCATCACCATCAGACTCGCCCGAGGAAGGCGCGAGTAGCGCCGCC
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