mRNA_E_fasciculatus_S2_contig6917.15053.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig6917.15053.1
Unique NamemRNA_E_fasciculatus_S2_contig6917.15053.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig6917.15053.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8Y9_ECTSI)

HSP 1 Score: 146 bits (369), Expect = 3.180e-39
Identity = 66/68 (97.06%), Postives = 67/68 (98.53%), Query Frame = 1 
Query:   10 QVLAATSLRPTGLQGYSDPYCVCYLKIPDSTGGSKSADDRFRGQRGETYFCEKTLNPQWSGQRFIFKV 213
            +VLAATSLRPTGLQGYSDPYCVCYLKIPDSTGGSKSADDRFRGQRGETYFCEKTLNP WSGQRFIFKV
Sbjct: 6049 EVLAATSLRPTGLQGYSDPYCVCYLKIPDSTGGSKSADDRFRGQRGETYFCEKTLNPTWSGQRFIFKV 6116
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BLAST of mRNA_E_fasciculatus_S2_contig6917.15053.1 vs.
Match: C2 (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMI8_9PHAE)

HSP 1 Score: 142 bits (358), Expect = 9.590e-38
Identity = 63/68 (92.65%), Postives = 66/68 (97.06%), Query Frame = 1 
Query:   10 QVLAATSLRPTGLQGYSDPYCVCYLKIPDSTGGSKSADDRFRGQRGETYFCEKTLNPQWSGQRFIFKV 213
            +VLAA SLRPTGLQGYSDPYCVCYLK+PDSTGGSKSADDRFRGQ GETYFCEKTLNP+WSGQRFIFKV
Sbjct:  471 EVLAAASLRPTGLQGYSDPYCVCYLKVPDSTGGSKSADDRFRGQGGETYFCEKTLNPKWSGQRFIFKV 538
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BLAST of mRNA_E_fasciculatus_S2_contig6917.15053.1 vs.
Match: Uncharacterized (protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CBY6_THAPS)

HSP 1 Score: 60.5 bits (145), Expect = 6.200e-9
Identity = 34/71 (47.89%), Postives = 40/71 (56.34%), Query Frame = 1 
Query:    1 LLCQVLAATSLRPTGLQGYSDPYCVCYLKIPDSTGGSKSADDRFRGQRGETYFCEKTLNPQWSGQRFIFKV 213
            ++ QVL AT L  + L G SDPYC   LK    T   KS + R       TYF EKTL+PQWS Q F+F V
Sbjct: 4155 VIVQVLEATGLLSSDLNGLSDPYCQVSLK--KHTSSFKSKETR------STYFVEKTLSPQWSQQSFVFDV 4217
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BLAST of mRNA_E_fasciculatus_S2_contig6917.15053.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UEG4_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 1.580e-8
Identity = 30/72 (41.67%), Postives = 44/72 (61.11%), Query Frame = 1 
Query:    1 LLCQVLAATSLRPTGLQGYSDPYCVCYLKIPDSTGGSKSADDRFR-GQRGETYFCEKTLNPQWSGQRFIFKV 213
            LL Q++ A+ ++ + L G++DPY V +LK P   G  K+     +  Q+  TYFC+KTLNP W  Q F+F V
Sbjct: 2156 LLVQIVEASDVQASDLSGFADPYVVVHLKTP---GDRKALLYTSKWAQKQITYFCQKTLNPTWVDQYFLFNV 2224
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BLAST of mRNA_E_fasciculatus_S2_contig6917.15053.1 vs.
Match: Vacuolar (protein sorting-associated protein 13 family protein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TRD9_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 2.960e-8
Identity = 31/71 (43.66%), Postives = 40/71 (56.34%), Query Frame = 1 
Query:    1 LLCQVLAATSLRPTGLQGYSDPYCVCYLKIPDSTGGSKSADDRFRGQRGETYFCEKTLNPQWSGQRFIFKV 213
            LL +V+ A  L+   + G SDP+   YLKI D        D R++ Q   TY  EKTLNP+W  Q F+FKV
Sbjct: 3780 LLVEVIEAKGLQAKDISGLSDPFVQVYLKIQDKL---LRRDPRYQ-QHFTTYVIEKTLNPKWQNQSFVFKV 3846
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig6917.15053.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
Uncharacterized3.180e-3997.06protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
C29.590e-3892.65domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
Uncharacterized6.200e-947.89protein n=1 Tax=Thalassiosira pseudonana TaxID=351... [more]
Hypothetical1.580e-841.67protein (Fragment) n=1 Tax=Pinguiococcus pyrenoido... [more]
Vacuolar2.960e-843.66protein sorting-associated protein 13 family prote... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig6917contigE_fasciculatus_S2_contig6917:3296..3517 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score147.9
Seed ortholog evalue1.9e-33
Seed eggNOG ortholog2880.D7G8Y9
Model size222
Hectar predicted targeting categorysignal peptide
Exons1
EggNOG free text desc.regulation of parkin-mediated stimulation of mitophagy in response to mitochondrial depolarization
EggNOG OGsCOG5043@1,KOG1809@2759
Cds size222
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842349.0553384-CDS-E_fasciculatus_S2_contig6917:3295..35171696842349.0553384-CDS-E_fasciculatus_S2_contig6917:3295..3517Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig6917 3296..3517 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig6917.15053.1prot_E_fasciculatus_S2_contig6917.15053.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig6917 3296..3517 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig6917.15053.1

>prot_E_fasciculatus_S2_contig6917.15053.1 ID=prot_E_fasciculatus_S2_contig6917.15053.1|Name=mRNA_E_fasciculatus_S2_contig6917.15053.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=74bp
LLCQVLAATSLRPTGLQGYSDPYCVCYLKIPDSTGGSKSADDRFRGQRGE
TYFCEKTLNPQWSGQRFIFKVRT*
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mRNA from alignment at E_fasciculatus_S2_contig6917:3296..3517-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig6917.15053.1 ID=mRNA_E_fasciculatus_S2_contig6917.15053.1|Name=mRNA_E_fasciculatus_S2_contig6917.15053.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=222bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig6917:3296..3517- (Ectocarpus fasciculatus EfasUO2)
TTGTTGTGCCAGGTGCTGGCTGCGACAAGCCTTCGCCCCACGGGACTCCA
GGGCTACTCGGACCCCTACTGCGTGTGCTACCTCAAGATTCCCGACTCCA
CCGGGGGATCCAAGTCTGCTGACGACCGATTTCGGGGACAGCGCGGGGAG
ACCTACTTCTGCGAGAAGACGCTAAACCCGCAGTGGTCCGGACAGCGCTT
CATTTTCAAGGTACGTACGTAA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig6917:3296..3517-

>mRNA_E_fasciculatus_S2_contig6917.15053.1 ID=mRNA_E_fasciculatus_S2_contig6917.15053.1|Name=mRNA_E_fasciculatus_S2_contig6917.15053.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=222bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig6917:3296..3517- (Ectocarpus fasciculatus EfasUO2)
TTGTTGTGCCAGGTGCTGGCTGCGACAAGCCTTCGCCCCACGGGACTCCA
GGGCTACTCGGACCCCTACTGCGTGTGCTACCTCAAGATTCCCGACTCCA
CCGGGGGATCCAAGTCTGCTGACGACCGATTTCGGGGACAGCGCGGGGAG
ACCTACTTCTGCGAGAAGACGCTAAACCCGCAGTGGTCCGGACAGCGCTT
CATTTTCAAGGTACGTACGTAA
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