mRNA_E_fasciculatus_S2_contig6914.15052.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig6914.15052.1
Unique NamemRNA_E_fasciculatus_S2_contig6914.15052.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig6914.15052.1 vs.
Match: RanBP2-type (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KST6_9PHAE)

HSP 1 Score: 185 bits (469), Expect = 1.110e-54
Identity = 110/204 (53.92%), Postives = 116/204 (56.86%), Query Frame = 2 
Query:    2 EAFGPEGEAQEDEEADLAKAMCLSQEGGGGGCSDDWACVACTFINEAAMVLCGMCGTPMPEPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--VVGLGDVRQRTAQXXXXXXXXXXXXXXXXXXXXXXN-SPPKPLPEQPQATRVPRKGPLRARYELRGILHHLGRHAFTGHYVTDVREEGSG 604
            EAFGPEGEAQEDE ADLAKA+CLSQEGGGG CSD+WAC ACTFINEA++V+CGMCGTP+PEP                                                    VV L DVRQRTAQ                        SPP    EQPQA RVPRKGPLRARYELRGILHHLGRHAF GHYVTDVREE SG
Sbjct:   30 EAFGPEGEAQEDEAADLAKAICLSQEGGGG-CSDEWACAACTFINEASVVVCGMCGTPLPEPLPPSSPGTPPAETDMSSVAGDSGGGSADGKSGERCGVQRRGSGARGGGDDEAVVALSDVRQRTAQDASPQPQPPAPLARGDDVKKKQQESPPXXXXEQPQAPRVPRKGPLRARYELRGILHHLGRHAFAGHYVTDVREERSG 232
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BLAST of mRNA_E_fasciculatus_S2_contig6914.15052.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2P5_ECTSI)

HSP 1 Score: 165 bits (417), Expect = 1.710e-43
Identity = 165/210 (78.57%), Postives = 169/210 (80.48%), Query Frame = 2 
Query:    2 EAFGPEGEAQEDEEADLAKAMCLSQEGGGGG----CSDDWACVACTFINEAAMVLCGMCGTPMPEPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--VVGLGDVRQRTAQXXXXXXXXXXXXXXXXXXXXXXNSPPKPLP-EQPQATRVPRKGPLRARYELRGILHHLGRHAFTGHYVTDVREEGSGGG 610
            EAFGPEGEAQEDE ADLAKA+CLSQEG        CSD+WAC ACTFINEA+MV C MCGTPM EPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  VV LGDVRQ TA+        XXXX    XXXXXX         EQPQA RVPRKGPLRARYELRGILHHLGRHAF GHYVTDVREEG GGG
Sbjct: 1207 EAFGPEGEAQEDEAADLAKAICLSQEGXXXXXXXXCSDEWACAACTFINEASMVACVMCGTPMSEPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVVALGDVRQWTAEDASPQPQPXXXXGRGDXXXXXXXXXXXXXXXEQPQALRVPRKGPLRARYELRGILHHLGRHAFAGHYVTDVREEGGGGG 1416
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BLAST of mRNA_E_fasciculatus_S2_contig6914.15052.1 vs.
Match: USP (domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKZ9_9STRA)

HSP 1 Score: 55.1 bits (131), Expect = 2.310e-5
Identity = 28/45 (62.22%), Postives = 31/45 (68.89%), Query Frame = 2 
Query:  476 QATRVPRKGPLRARYELRGILHHLGRHAFTGHYVTDVREEGSGGG 610
            +A R PR  PL+ARY L  +LHHLG HAF GHYV  VR   SGGG
Sbjct: 1270 EAPRPPRDAPLKARYRLAAVLHHLGPHAFAGHYVACVR---SGGG 1311
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig6914.15052.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
RanBP2-type1.110e-5453.92domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
Uncharacterized1.710e-4378.57protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
USP2.310e-562.22domain-containing protein n=1 Tax=Tribonema minus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig6914contigE_fasciculatus_S2_contig6914:6732..7342 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop0
Start1
Model size612
Hectar predicted targeting categoryother localisation
Exons1
Cds size360
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842348.9279294-UTR-E_fasciculatus_S2_contig6914:6731..69821696842348.9279294-UTR-E_fasciculatus_S2_contig6914:6731..6982Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig6914 6732..6982 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842348.9375222-CDS-E_fasciculatus_S2_contig6914:6982..73421696842348.9375222-CDS-E_fasciculatus_S2_contig6914:6982..7342Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig6914 6983..7342 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig6914.15052.1prot_E_fasciculatus_S2_contig6914.15052.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig6914 6983..7342 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig6914.15052.1

>prot_E_fasciculatus_S2_contig6914.15052.1 ID=prot_E_fasciculatus_S2_contig6914.15052.1|Name=mRNA_E_fasciculatus_S2_contig6914.15052.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=120bp
MAGASTERARRVAEHNGDPGQEEGARKKRSWAWAMSGSALRKTIHRNHRH
RRSREATTPRRSNTIARRNHYRSSRRPRGSPGRGPCAPGTSSAASCITSG
GTPSPGTTSPMSARKGVAAA
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mRNA from alignment at E_fasciculatus_S2_contig6914:6732..7342+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig6914.15052.1 ID=mRNA_E_fasciculatus_S2_contig6914.15052.1|Name=mRNA_E_fasciculatus_S2_contig6914.15052.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=611bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig6914:6732..7342+ (Ectocarpus fasciculatus EfasUO2)
GGAGGCGTTCGGCCCGGAAGGCGAGGCTCAAGAGGACGAAGAGGCAGACC
TCGCGAAAGCAATGTGTTTGAGCCAGGAGGGCGGCGGCGGTGGCTGTAGC
GACGACTGGGCGTGCGTGGCGTGCACGTTCATCAACGAGGCTGCCATGGT
CCTGTGCGGCATGTGCGGAACGCCTATGCCAGAGCCACCGCCGCCTCCGG
GCACCCCTCCTGCGGAGAACGAGATGAGCAGCCTCGCCGGCGACGGCGGC
AATGGCGGGAGCGTCGACGGAAAGAGCGAGGAGAGTCGCGGAGCACAACG
GAGATCCGGGGCAAGAGGAGGGGGCGAGGAAGAAGCGGTCGTGGGCCTGG
GCGATGTCCGGCAGCGCACTGCGCAAGACGATTCACCGCAACCACCGCCA
CCGCCGCTCGCGAGAGGCGACGACGCCAAGAAGAAGCAACACAATAGCCC
GCCGAAACCACTACCGGAGCAGCCGCAGGCCACGAGGGTCCCCAGGAAGG
GGCCCCTGCGCGCCCGGTACGAGCTCCGCGGCATCCTGCATCACCTCGGG
CGGCACGCCTTCACCGGGCACTACGTCACCGATGTCCGCGAGGAAGGGAG
TGGCGGCGGCA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig6914:6732..7342+

>mRNA_E_fasciculatus_S2_contig6914.15052.1 ID=mRNA_E_fasciculatus_S2_contig6914.15052.1|Name=mRNA_E_fasciculatus_S2_contig6914.15052.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=360bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig6914:6732..7342+ (Ectocarpus fasciculatus EfasUO2)
ATGGCGGGAGCGTCGACGGAAAGAGCGAGGAGAGTCGCGGAGCACAACGG
AGATCCGGGGCAAGAGGAGGGGGCGAGGAAGAAGCGGTCGTGGGCCTGGG
CGATGTCCGGCAGCGCACTGCGCAAGACGATTCACCGCAACCACCGCCAC
CGCCGCTCGCGAGAGGCGACGACGCCAAGAAGAAGCAACACAATAGCCCG
CCGAAACCACTACCGGAGCAGCCGCAGGCCACGAGGGTCCCCAGGAAGGG
GCCCCTGCGCGCCCGGTACGAGCTCCGCGGCATCCTGCATCACCTCGGGC
GGCACGCCTTCACCGGGCACTACGTCACCGATGTCCGCGAGGAAGGGAGT
GGCGGCGGCA
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